HHsearch alignment for GI: 254780217 and conserved domain: PRK05707
>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=442.64 Aligned_cols=301 Identities=26% Similarity=0.332 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~ 96 (347)
T Consensus 8 ~~~~w~~l~---~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~s------C~~~~~~~HPD~~~i~ 78 (328)
T PRK05707 8 QQSLWQQLA---GRGRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKG------CQLLAAGSHPDNFVLE 78 (328)
T ss_pred CHHHHHHHH---HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH------HHHHHCCCCCCEEEEE
T ss_conf 489999999---7798220464479998679999999999984899999899988889------9998758999879984
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 (347)
Q Consensus 97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T 176 (347)
T Consensus 79 pe------~~~~~I~IdqIR~l~~~~~~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~lLpT 152 (328)
T PRK05707 79 PE------EADKPIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGQTVLLLISHQPSRLLPT 152 (328)
T ss_pred CC------CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCHHH
T ss_conf 26------667769799999999998317667895799950287738999999999850789875999860993448258
Q ss_pred HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCCHHHH
Q ss_conf 520369886479998999999997278889678999999759897899988145779999999998403-2343228999
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI-PRQEYALQKM 255 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 255 (347)
T Consensus 153 I~SRCq~~~~~~p~~e~~~~~L~~~~~~~~~~~a~~ll~la~G~p~~A~~l~~~~~~~~r~~~~~~l~~l~~~~~---~~ 229 (328)
T PRK05707 153 IKSRCQQLACPLPSNEPSLQWLQQALPESDAEERIELLTLAAGSPLRALQLHAQGVREQRARVVDGVKKLLKQQQ---SA 229 (328)
T ss_pred HHHCCEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC---CH
T ss_conf 874141334899899999999997556557899999999749999999987486689999999999999983878---89
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCH---H---------HHHHHHHHHHHHHHHHHHHH-HCCCC
Q ss_conf 999999831676999999999999999999998654-1004---5---------48999999999999999876-22799
Q gi|254780217|r 256 QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL-SGQL---E---------EADQIAQIYFSLVKRVHAFS-MYNLD 321 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~---~---------~~~~l~~~~~~i~~~~~~~~-~~NLd 321 (347)
T Consensus 230 ~~~~~~~~k~~~~~~l~~l~~~~~D~l~~~~~~~~~~l~~~d~~~~i~~la~~~s~~~l~~~~~~l~~~r~~l~~~~NvN 309 (328)
T PRK05707 230 SQLAESWLKVPLPLLFDWFCDWAHLILRYQLTQDEEGLGLADMRKVLQYLAQKSPQAKVLALQQWLLEQRQKVLGKANLN 309 (328)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999975057999999999999999999825971410478899999999872999999999999999999986369988
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 79999999999972
Q gi|254780217|r 322 RRQMIFHLLSKARE 335 (347)
Q Consensus 322 ~~~~ll~ll~~l~~ 335 (347)
T Consensus 310 ~~L~lE~Lll~~~~ 323 (328)
T PRK05707 310 RVLLLEALLVQWAG 323 (328)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 89999999999857