HHsearch alignment for GI: 254780217 and conserved domain: PRK05917
>PRK05917 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=7.4e-41 Score=348.59 Aligned_cols=174 Identities=20% Similarity=0.241 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~ 96 (347)
T Consensus 2 ~~~~We~L~~~i~~~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p----~----------~~~~i~~~~HPD~~~i~ 67 (290)
T PRK05917 2 ENAAWEALLQRVRDQKVPSAILLHGQDLSNLSQYAYELASLILLESSP----E----------AQYKISQKIHPDIHEFF 67 (290)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC----C----------HHHHHHHCCCCCEEEEC
T ss_conf 854999999999839966068768999865999999999998578996----1----------68898746899859961
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 (347)
Q Consensus 97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T 176 (347)
T Consensus 68 pe------~k~~~~~Id~iR~l~~~i~~~p~~g~~KV~IId~Ad~Mn~~AaNALLKtLEEPP~~tvfILit~~~~~lLpT 141 (290)
T PRK05917 68 PE------GKGRLHSIETPRAIKKQIWIHPYEANYKIYIIHEADRMTLDAISAFLKVLEDPPKHSVIILTSAKPQRLPPT 141 (290)
T ss_pred CC------CCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHH
T ss_conf 57------778878678999999996418646882699975677638999999999734798785999986992548237
Q ss_pred HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCH
Q ss_conf 520369886479998999999997278889678999999759897
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~ 221 (347)
T Consensus 142 I~SRCQ~I~i~~~e-----------~~~i~~e~~~~l~~~a~g~~ 175 (290)
T PRK05917 142 IRSRSLSIHIPGEE-----------KTLPSKEDIAYLIRYAQGKE 175 (290)
T ss_pred HHHCCCEEECCCCC-----------CCCCCHHHHHHHHHHHCCCH
T ss_conf 76335116777620-----------13478899999999846973