HHsearch alignment for GI: 254780217 and conserved domain: PRK05917

>PRK05917 DNA polymerase III subunit delta'; Validated.
Probab=100.00  E-value=7.4e-41  Score=348.59  Aligned_cols=174  Identities=20%  Similarity=0.241  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf             29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r   17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS   96 (347)
Q Consensus        17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~   96 (347)
T Consensus         2 ~~~~We~L~~~i~~~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p----~----------~~~~i~~~~HPD~~~i~   67 (290)
T PRK05917          2 ENAAWEALLQRVRDQKVPSAILLHGQDLSNLSQYAYELASLILLESSP----E----------AQYKISQKIHPDIHEFF   67 (290)
T ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC----C----------HHHHHHHCCCCCEEEEC
T ss_conf             854999999999839966068768999865999999999998578996----1----------68898746899859961


Q ss_pred             CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf             10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r   97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST  176 (347)
Q Consensus        97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T  176 (347)
T Consensus        68 pe------~k~~~~~Id~iR~l~~~i~~~p~~g~~KV~IId~Ad~Mn~~AaNALLKtLEEPP~~tvfILit~~~~~lLpT  141 (290)
T PRK05917         68 PE------GKGRLHSIETPRAIKKQIWIHPYEANYKIYIIHEADRMTLDAISAFLKVLEDPPKHSVIILTSAKPQRLPPT  141 (290)
T ss_pred             CC------CCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHH
T ss_conf             57------778878678999999996418646882699975677638999999999734798785999986992548237


Q ss_pred             HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCH
Q ss_conf             520369886479998999999997278889678999999759897
Q gi|254780217|r  177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV  221 (347)
Q Consensus       177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~  221 (347)
T Consensus       142 I~SRCQ~I~i~~~e-----------~~~i~~e~~~~l~~~a~g~~  175 (290)
T PRK05917        142 IRSRSLSIHIPGEE-----------KTLPSKEDIAYLIRYAQGKE  175 (290)
T ss_pred             HHHCCCEEECCCCC-----------CCCCCHHHHHHHHHHHCCCH
T ss_conf             76335116777620-----------13478899999999846973