HHsearch alignment for GI: 254780217 and conserved domain: PRK06090
>PRK06090 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=410.16 Aligned_cols=301 Identities=20% Similarity=0.235 Sum_probs=231.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~ 96 (347)
T Consensus 8 l~~~~~~l~~~~~~~rl~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~-~~~Cg~C~s------C~l~~~g~HPD~~~i~ 80 (319)
T PRK06090 8 LVPVWQNWKSGLDAERIPGALLLQSDEGLGVESLVELFSHALLCQNYQ-SEACGFCHS------CELMKSGNHPDLHVIK 80 (319)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC-CCCCCCCHH------HHHHHCCCCCCCEEEE
T ss_conf 379999999999869963067667999857999999999998089999-998877877------9998758999823661
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 (347)
Q Consensus 97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T 176 (347)
T Consensus 81 pe------~~~k~I~vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~ll~T 154 (319)
T PRK06090 81 PE------KEGKSITVEQIRQCNRLAQESSQLGGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPT 154 (319)
T ss_pred CC------CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCC
T ss_conf 23------356768799999999997545210693699981444349999999999842899883899876851208641
Q ss_pred HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCCHHHH
Q ss_conf 520369886479998999999997278889678999999759897899988145779999999998403-2343228999
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI-PRQEYALQKM 255 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 255 (347)
T Consensus 155 I~SRCq~~~l~~p~~~~~~~WL~~q~~~~~----~~aL~l~~g~Pl~a~~~l~~~~~~~~~~l~~~l~~~~~~~~--~~~ 228 (319)
T PRK06090 155 IVSRCQQWVVTPPSTDQAMQWLKGQGISVP----AYALKLNMGSPLKTLAMMKEGELEEYHKLERQLVDALSGPV--SDV 228 (319)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHCCCCH----HHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC--CHH
T ss_conf 876144502899599999999988487557----99998849994999998638689999999999999984788--419
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHC-----CHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHH
Q ss_conf 9999998316769999999999999999999986--5410-----0454899999999999999987622-799799999
Q gi|254780217|r 256 QQIADELLSQDQKIAFDFLIEFILKEICKSAKAA--ALSG-----QLEEADQIAQIYFSLVKRVHAFSMY-NLDRRQMIF 327 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~-----~~~~~~~l~~~~~~i~~~~~~~~~~-NLd~~~~ll 327 (347)
T Consensus 229 ~~~~~~~~~-~~~~~L~Wl~~lL~Da~K~~~gi~~~~~~~~~~~l~~l~~~~L~~~~~~l~~~r~qL~~~~~lN~ELll~ 307 (319)
T PRK06090 229 LKCASLIAA-DPLTALSWLWLLLTDAQKAHFGVQNEYILPGSAALGPFTYSGLYASTAKLLELKEQLQQFSGLNTELLIM 307 (319)
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 999887360-5777899999999999999860521066667999984189999999999999999997188726999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999997278
Q gi|254780217|r 328 HLLSKARECN 337 (347)
Q Consensus 328 ~ll~~l~~~~ 337 (347)
T Consensus 308 ~~Ll~~~~~~ 317 (319)
T PRK06090 308 NWLIESREAL 317 (319)
T ss_pred HHHHHHHHHH
T ss_conf 9999987874