HHsearch alignment for GI: 254780217 and conserved domain: PRK06526

>PRK06526 transposase; Provisional.
Probab=96.85  E-value=0.0026  Score=46.32  Aligned_cols=118  Identities=15%  Similarity=0.214  Sum_probs=68.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf             81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r   34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD  113 (347)
Q Consensus        34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd  113 (347)
T Consensus        98 ~~Nvil~G~~GtGKThLA~Alg~~A-~~~G------------------------~--~v~f~~~~~-----------L~~  139 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRA-CQAG------------------------H--RVLFATAAQ-----------WVA  139 (254)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHH-HHCC------------------------C--CEEEEEHHH-----------HHH
T ss_conf             8878998999986899999999999-9869------------------------9--679987799-----------999


Q ss_pred             HHHHHHHHCCC---CCCCCCCHHHHHHHHHH--CCHHHHHHHHHHHHHCCCCCCEEEEECCCC--------------CCC
Q ss_conf             87554431022---21111210353220554--240001456777663034341676504433--------------573
Q gi|254780217|r  114 EIRRIRYFLSL---TANTGYWRVIMIDPVDG--MNRNAANALLKSLEEPPQKVLFILISHASP--------------TIL  174 (347)
Q Consensus       114 ~IR~l~~~~~~---~~~~~~~Ki~IId~ad~--ln~~AaNALLK~LEEPp~~t~fiLit~~~~--------------~il  174 (347)
T Consensus       140 ~L~~a~~~g~~~~~~~~l~~~dLLIiDe~g~~~~~~~~a~~lf~li~~Rye~~S~IiTSn~~~~~W~~~f~D~~la~Ail  219 (254)
T PRK06526        140 RLAAAHHAGRLQDELVKLGRIPLLIVDEVGYIPFEAEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMI  219 (254)
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCHHHHHHHH
T ss_conf             99998855809999998513687765021364478899999999999997458867665898668888648689999999


Q ss_pred             HHHHCEEEEEECCCC
Q ss_conf             025203698864799
Q gi|254780217|r  175 STIRSRCLSIKFNSL  189 (347)
Q Consensus       175 ~TI~SRc~~i~f~~l  189 (347)
T Consensus       220 DRL~H~a~~i~~~G~  234 (254)
T PRK06526        220 DRLVHHAEVISLKGD  234 (254)
T ss_pred             HHHCCCEEEEEECCC
T ss_conf             986256289984388