HHsearch alignment for GI: 254780217 and conserved domain: PRK06585
>PRK06585 holA DNA polymerase III subunit delta; Reviewed.
Probab=97.86 E-value=0.0053 Score=43.84 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=102.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHH
Q ss_conf 16631179898889999999999817799886431210126788679999678987545300100010134212323788
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~ 114 (347)
T Consensus 21 ~~~LlyG~d~glv~e~~~~l~~~~~~~~~---~~f---------------------~~~~l~~--~--------el~-~d 65 (343)
T PRK06585 21 RAVLLYGPDRGLVRERARRLAKSVVDDPD---DPF---------------------AVVRLDG--D--------ELD-AD 65 (343)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCCC---CCC---------------------EEEEECH--H--------HHH-CC
T ss_conf 58999638764799999999997255667---874---------------------1577479--9--------883-39
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH------HCEEEEEECCC
Q ss_conf 755443102221111210353220554240001456777663034341676504433573025------20369886479
Q gi|254780217|r 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI------RSRCLSIKFNS 188 (347)
Q Consensus 115 IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI------~SRc~~i~f~~ 188 (347)
T Consensus 66 ~~~l~de~~t~slF~~~rlI~i~~~~---d~~~~~l~~~l~~~~~~~~lIi~a~~L~k~-skLrk~~e~~~~~~~i~cY~ 141 (343)
T PRK06585 66 PARLEDEANTISLFGGRRLIWVRAGG---KSLAAALKALLAEPPGDAFIVIEAGDLKKG-SSLRKLFETAASAAAIPCYA 141 (343)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCC---HHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CHHHHHHHHCCCEEEEEECC
T ss_conf 99999998476876898489972687---256999999981789982899973897731-18999998647869995006
Q ss_pred CCHHHHHHHHH----HHCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99899999999----727888967899999975989789998
Q gi|254780217|r 189 LSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIK 226 (347)
Q Consensus 189 l~~~~~~~~L~----~~~~~~~~~~~~~~~~~s~Gs~~~A~~ 226 (347)
T Consensus 142 d~~~~l~~~i~~~l~~~g~~i~~~a~~~L~~~~g~d~~~~~~ 183 (343)
T PRK06585 142 DDERDLARLIDDELAKAGLRITPDARAYLVALLGGDRLASRN 183 (343)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 998899999999999829997799999999873427999999