HHsearch alignment for GI: 254780217 and conserved domain: PRK06585

>PRK06585 holA DNA polymerase III subunit delta; Reviewed.
Probab=97.86  E-value=0.0053  Score=43.84  Aligned_cols=153  Identities=18%  Similarity=0.186  Sum_probs=102.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHH
Q ss_conf             16631179898889999999999817799886431210126788679999678987545300100010134212323788
Q gi|254780217|r   35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE  114 (347)
Q Consensus        35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~  114 (347)
T Consensus        21 ~~~LlyG~d~glv~e~~~~l~~~~~~~~~---~~f---------------------~~~~l~~--~--------el~-~d   65 (343)
T PRK06585         21 RAVLLYGPDRGLVRERARRLAKSVVDDPD---DPF---------------------AVVRLDG--D--------ELD-AD   65 (343)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHCCCCC---CCC---------------------EEEEECH--H--------HHH-CC
T ss_conf             58999638764799999999997255667---874---------------------1577479--9--------883-39


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH------HCEEEEEECCC
Q ss_conf             755443102221111210353220554240001456777663034341676504433573025------20369886479
Q gi|254780217|r  115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI------RSRCLSIKFNS  188 (347)
Q Consensus       115 IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI------~SRc~~i~f~~  188 (347)
T Consensus        66 ~~~l~de~~t~slF~~~rlI~i~~~~---d~~~~~l~~~l~~~~~~~~lIi~a~~L~k~-skLrk~~e~~~~~~~i~cY~  141 (343)
T PRK06585         66 PARLEDEANTISLFGGRRLIWVRAGG---KSLAAALKALLAEPPGDAFIVIEAGDLKKG-SSLRKLFETAASAAAIPCYA  141 (343)
T ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCC---HHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CHHHHHHHHCCCEEEEEECC
T ss_conf             99999998476876898489972687---256999999981789982899973897731-18999998647869995006


Q ss_pred             CCHHHHHHHHH----HHCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf             99899999999----727888967899999975989789998
Q gi|254780217|r  189 LSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIK  226 (347)
Q Consensus       189 l~~~~~~~~L~----~~~~~~~~~~~~~~~~~s~Gs~~~A~~  226 (347)
T Consensus       142 d~~~~l~~~i~~~l~~~g~~i~~~a~~~L~~~~g~d~~~~~~  183 (343)
T PRK06585        142 DDERDLARLIDDELAKAGLRITPDARAYLVALLGGDRLASRN  183 (343)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf             998899999999999829997799999999873427999999