HHsearch alignment for GI: 254780217 and conserved domain: PRK06674
>PRK06674 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=0 Score=466.12 Aligned_cols=215 Identities=30% Similarity=0.425 Sum_probs=204.0
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
T Consensus 5 aLyrkyRP~~F~dvvGQ~~v~~~L~nai~~~ri~HAyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~------ 78 (563)
T PRK06674 5 ALYRVFRPQKFEDVVGQEHVTKTLQNALLQEKVSHAYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPS------ 78 (563)
T ss_pred HHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 78876389976552480999999999998499650343128998689999999999857999999887766878------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
T Consensus 79 C~~i~~g~~~DviEiDaasn---------~gVd~IR~i~~~v~~~P~~~~yKV~IIDeah~Lt~~A~NALLKtLEEPP~~ 149 (563)
T PRK06674 79 CLGITNGSISDVLEIDAASN---------NGVDEIRDIRDKVKFAPSAVEYKVYIIDEVHMLSIGAFNALLKTLEEPPGH 149 (563)
T ss_pred HHHHHCCCCCCEEEECCCCC---------CCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCC
T ss_conf 99985589987798525555---------787999999998264886787379998545637999999999986388756
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 41676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
T Consensus 150 viFILaTtep~ki~~TI~SRCQrf~F~ri~~~~i~~rL~~I~~~E~i~~~~~aL~~Ia~~a~GsmRDAlsiLdQ 223 (563)
T PRK06674 150 VIFILATTEPHKIPPTIISRCQRFDFRRISVNDIVERLSTVVTNEGTQVEDEALQIIARAADGGMRDALSLLDQ 223 (563)
T ss_pred EEEEEECCCHHHCCHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 49999659947584788733103127889999999999999998499987889999999769978899999999