HHsearch alignment for GI: 254780217 and conserved domain: PRK07003
>PRK07003 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=0 Score=442.13 Aligned_cols=250 Identities=26% Similarity=0.394 Sum_probs=217.4
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
T Consensus 5 vlark~RP~~f~e~vGQ~~v~~~l~nal~~~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~------ 78 (816)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA------ 78 (816)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 77755089857662384999999999997098631475117898888899999999867899999897877555------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
T Consensus 79 C~~i~~g~~~d~iEiDaAS~~---------~vd~~r~l~~~~~y~p~~~r~KvyiiDEvHmls~~afnalLKtlEepP~h 149 (816)
T PRK07003 79 CREIDEGRFVDYVEMDAASNR---------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (816)
T ss_pred HHHHHCCCCCCEEEEECCCCC---------CHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 787755887754786355435---------76899999986224786674479998415433999999999840379866
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH----
Q ss_conf 41676504433573025203698864799989999999----9727888967899999975989789998814577----
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC---- 232 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~---- 232 (347)
T Consensus 150 v~FilaTTd~~k~p~tilSRc~~f~l~~~~~~~i~~~l~~i~~~E~i~~e~~al~lia~~a~GsmRDalsl~dQaia~~~ 229 (816)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 (816)
T ss_pred EEEEEECCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 48999558801152889877765223679999999999999998299779999999999767737888859999998469
Q ss_pred -HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHH
Q ss_conf -9999999998403234322899999999983167699
Q gi|254780217|r 233 -DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKI 269 (347)
Q Consensus 233 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (347)
T Consensus 230 g~~~~~~v~~mLG~~d~----~~~~~ll~al~~~d~~~ 263 (816)
T PRK07003 230 NEVTETAVSGMLGALDQ----TYMVRLLDALAAADGPE 263 (816)
T ss_pred CCCCHHHHHHHHCCCCH----HHHHHHHHHHHHCCHHH
T ss_conf 97379999998588877----89999999999558999