HHsearch alignment for GI: 254780217 and conserved domain: PRK07276
>PRK07276 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=9.8e-45 Score=379.86 Aligned_cols=208 Identities=23% Similarity=0.346 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~ 96 (347)
T Consensus 7 Qp~i~~~l~~~i~~~rl~HAyLf~G--~~Gk~~~A~~~A~~l~C~~~~~~~pCg~C~~------C~~i~~~~hpDv~~i~ 78 (290)
T PRK07276 7 QPKLFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEDVLPCGHCRS------CRLIEQGDFSDVTVIE 78 (290)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH------HHHHHCCCCCCCEEEC
T ss_conf 8999999999998499650542169--8687999999999981899999898988999------9998769998713771
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 (347)
Q Consensus 97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T 176 (347)
T Consensus 79 ~--------~~~~I~vd~IR~l~~~~~~~~~~g~~KV~II~~Ad~mt~~AaNaLLK~LEEPp~~t~~iLlt~~~~~lLpT 150 (290)
T PRK07276 79 P--------QGQVIKTDTIRELTANFSQSGYEGKRQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPT 150 (290)
T ss_pred C--------CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCHH
T ss_conf 6--------77757688999999998445613782799977656529999999999703898883799887992549378
Q ss_pred HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH-HHHHHHHHHHHC
Q ss_conf 52036988647999899999999727888967899999975989789998814577-999999999840
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC-DKIISSYIDLIH 244 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~-~~~~~~~~~~l~ 244 (347)
T Consensus 151 I~SRCQ~i~f-p~~~~~l~~~l~~~gi--~~~~a~~la~~~~-~~~~a~~l~~~~~f~~~~~~~~~~~~ 215 (290)
T PRK07276 151 IKSRTQIFHF-PKNEAYLYQLLEEKGL--LKTQAKLLAKLAQ-STSEAEKLAQNSKFLELIDQAERFVS 215 (290)
T ss_pred HHHCCCCCCC-CCCHHHHHHHHHHCCC--CHHHHHHHHHHHC-CHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 8736601028-9967999999998699--8679999999965-99999998725489999999999999