HHsearch alignment for GI: 254780217 and conserved domain: PRK07471
>PRK07471 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=527.21 Aligned_cols=334 Identities=34% Similarity=0.484 Sum_probs=298.0
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCC----CCC
Q ss_conf 6655558756561092999999999998288981663117989888999999999981779988643121012----678
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP----DPC 77 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~----~~~ 77 (347)
T Consensus 7 ~~~~p~P~~~~~liGqe~~~~~L~~a~~~grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~ 86 (363)
T PRK07471 7 PEADPHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPD 86 (363)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 89995999827316819999999999985997645876799981889999999999857999777776787053125877
Q ss_pred CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 86799996789875453001000101342123237887554431022211112103532205542400014567776630
Q gi|254780217|r 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 (347)
Q Consensus 78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP 157 (347)
T Consensus 87 ~p~~r~i~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEP 166 (363)
T PRK07471 87 HPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 166 (363)
T ss_pred CCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCC
T ss_conf 72899995269998466762001133321244539999999999724852489669998687873889999999972158
Q ss_pred CCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHH-CCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
Q ss_conf 34341676504433573025203698864799989999999972-78889678999999759897899988145779999
Q gi|254780217|r 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 (347)
Q Consensus 158 p~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~-~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~ 236 (347)
T Consensus 167 P~~t~fiLit~~~~~llpTI~SRCq~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~la~~a~Gs~~~Al~l~~~~~~~l~ 246 (363)
T PRK07471 167 PARSLLLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIAALAEAGGPALDDAELAALAALAEGSVGRALRLAGGDGLALY 246 (363)
T ss_pred CCCEEEEEEECCHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
T ss_conf 98838998639977777999973524258995999999999984389999899999999758999999987479859999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------HHHHH
Q ss_conf 9999984032343228999999999831676999999999999999999998654100-----------------45489
Q gi|254780217|r 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ-----------------LEEAD 299 (347)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----------------~~~~~ 299 (347)
T Consensus 247 ~~~~~ll~~~-~~~d~~~~~~lad~~a~~~-~~~~~~~l~l~~~~l~~~~r~~~~~~~~~~~~~~E~~~~~rl~~~~~~~ 324 (363)
T PRK07471 247 QRTTALLDTL-PRLDRRALHALADAAAGGD-RAAFALFLDLLDRWLARLARAGARNAGLPEAVPGEAALLARLAPDARLR 324 (363)
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHH
T ss_conf 9999999747-6789999999999981687-7999999999999999999875227881001731799998608863089
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999876227997999999999997278
Q gi|254780217|r 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 (347)
Q Consensus 300 ~l~~~~~~i~~~~~~~~~~NLd~~~~ll~ll~~l~~~~ 337 (347)
T Consensus 325 ~~~~~~~~l~~~~~~~~~~NLD~k~~~ld~~~~l~~~a 362 (363)
T PRK07471 325 RWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEAA 362 (363)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998618988999999999999972