HHsearch alignment for GI: 254780217 and conserved domain: PRK07471

>PRK07471 DNA polymerase III subunit delta'; Validated.
Probab=100.00  E-value=0  Score=527.21  Aligned_cols=334  Identities=34%  Similarity=0.484  Sum_probs=298.0

Q ss_pred             CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCC----CCC
Q ss_conf             6655558756561092999999999998288981663117989888999999999981779988643121012----678
Q gi|254780217|r    2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP----DPC   77 (347)
Q Consensus         2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~----~~~   77 (347)
T Consensus         7 ~~~~p~P~~~~~liGqe~~~~~L~~a~~~grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~   86 (363)
T PRK07471          7 PEADPHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPD   86 (363)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC
T ss_conf             89995999827316819999999999985997645876799981889999999999857999777776787053125877


Q ss_pred             CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf             86799996789875453001000101342123237887554431022211112103532205542400014567776630
Q gi|254780217|r   78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP  157 (347)
Q Consensus        78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP  157 (347)
T Consensus        87 ~p~~r~i~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEP  166 (363)
T PRK07471         87 HPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP  166 (363)
T ss_pred             CCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCC
T ss_conf             72899995269998466762001133321244539999999999724852489669998687873889999999972158


Q ss_pred             CCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHH-CCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
Q ss_conf             34341676504433573025203698864799989999999972-78889678999999759897899988145779999
Q gi|254780217|r  158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII  236 (347)
Q Consensus       158 p~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~-~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~  236 (347)
T Consensus       167 P~~t~fiLit~~~~~llpTI~SRCq~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~la~~a~Gs~~~Al~l~~~~~~~l~  246 (363)
T PRK07471        167 PARSLLLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIAALAEAGGPALDDAELAALAALAEGSVGRALRLAGGDGLALY  246 (363)
T ss_pred             CCCEEEEEEECCHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
T ss_conf             98838998639977777999973524258995999999999984389999899999999758999999987479859999


Q ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------HHHHH
Q ss_conf             9999984032343228999999999831676999999999999999999998654100-----------------45489
Q gi|254780217|r  237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ-----------------LEEAD  299 (347)
Q Consensus       237 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----------------~~~~~  299 (347)
T Consensus       247 ~~~~~ll~~~-~~~d~~~~~~lad~~a~~~-~~~~~~~l~l~~~~l~~~~r~~~~~~~~~~~~~~E~~~~~rl~~~~~~~  324 (363)
T PRK07471        247 QRTTALLDTL-PRLDRRALHALADAAAGGD-RAAFALFLDLLDRWLARLARAGARNAGLPEAVPGEAALLARLAPDARLR  324 (363)
T ss_pred             HHHHHHHHHC-CCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHH
T ss_conf             9999999747-6789999999999981687-7999999999999999999875227881001731799998608863089


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999876227997999999999997278
Q gi|254780217|r  300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN  337 (347)
Q Consensus       300 ~l~~~~~~i~~~~~~~~~~NLd~~~~ll~ll~~l~~~~  337 (347)
T Consensus       325 ~~~~~~~~l~~~~~~~~~~NLD~k~~~ld~~~~l~~~a  362 (363)
T PRK07471        325 RWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEAA  362 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999999999998618988999999999999972