HHsearch alignment for GI: 254780217 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.41 E-value=1.7e-05 Score=63.91 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=112.8
Q ss_pred CCCHHHHC-CHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 87565610-92999-99999999828898166311798988899999999998177998864312101267886799996
Q gi|254780217|r 8 PVYNQRLF-GHEDI-EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA 85 (347)
Q Consensus 8 p~~~~~i~-G~~~~-~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (347)
T Consensus 18 ~~tfdnFi~g~n~~~~~al~~~~~-~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~----------------------- 73 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNVLR-QEHSGYIYLWGREGAGRSHLLHAACAELSQRG----------------------- 73 (235)
T ss_pred CCCHHCCCCCCCHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-----------------------
T ss_conf 766302344886999999999985-78987699989999888999999999997079-----------------------
Q ss_pred CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHCC--CCC
Q ss_conf 78987545300100010134212323788755443102221111210353220554240--00145677766303--434
Q gi|254780217|r 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEPP--QKV 161 (347)
Q Consensus 86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEPp--~~t 161 (347)
T Consensus 74 ----~~~~yl~~~--~~~-----~~-~~~~---l~~l------~~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~ 132 (235)
T PRK08084 74 ----DAVGYVPLD--KRA-----WF-VPEV---LEGM------EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKT 132 (235)
T ss_pred ----CCEEEEEHH--HHH-----HH-HHHH---HHHH------HHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf ----857998779--866-----51-7999---9876------4189899827455469978999999999999984896
Q ss_pred CEEEEECCCC-C---CCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 1676504433-5---730252036---9886479998999999997----27888967899999975989789998814
Q gi|254780217|r 162 LFILISHASP-T---ILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 162 ~fiLit~~~~-~---il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
T Consensus 133 ~ll~ts~~~P~~l~~~l~DL~SRl~~g~~~~i~~~dde~~~~iL~~~a~~rgl~l~~~V~~yl~~~~~R~~~~L~~~l~ 211 (235)
T PRK08084 133 RLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred EEEEECCCCHHHCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 6999679882430231288999995697278559998999999999999739999989999999861588999999999