HHsearch alignment for GI: 254780217 and conserved domain: PRK08451

>PRK08451 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00  E-value=0  Score=483.30  Aligned_cols=319  Identities=22%  Similarity=0.329  Sum_probs=242.8

Q ss_pred             CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf             96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r    1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF   80 (347)
Q Consensus         1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~   80 (347)
T Consensus         3 ~LarKYRP~~F~evIGQe~iv~~L~nAi~~~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~s------   76 (523)
T PRK08451          3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQ------   76 (523)
T ss_pred             HHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf             14442089965440494999999999998599671587578998688999999999975999999898887888------


Q ss_pred             HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf             99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r   81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK  160 (347)
Q Consensus        81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~  160 (347)
T Consensus        77 C~~i~~g~hpDViEiDaa---------sn~gID~IReLie~~~~~P~~gryKV~IIDEah~Lt~~A~NALLKTLEEPP~~  147 (523)
T PRK08451         77 CQAALEGRHIDIIEMDAA---------SNRGIDDIRNLIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY  147 (523)
T ss_pred             HHHHHCCCCCCEEEECCC---------CCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             999864899985510553---------33689999999997235886797279998260304899999999970389878


Q ss_pred             CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH----
Q ss_conf             41676504433573025203698864799989999999----9727888967899999975989789998814577----
Q gi|254780217|r  161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC----  232 (347)
Q Consensus       161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~----  232 (347)
T Consensus       148 vvFILaTTep~KLp~TIlSRCQ~f~Fk~I~~~~I~~~L~~I~~~E~i~~e~~AL~~IA~~a~GslRDalslLdQ~i~~~~  227 (523)
T PRK08451        148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILNKEGVSYEPEALEILARSGSGSLRDTLTLLDQAIIFCK  227 (523)
T ss_pred             CEEEEECCCHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf             37999759947684888742031103379999999999999998399879999999999778948689879999998479


Q ss_pred             -HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             -99999999984032343228999999999831676999999999-------9999999999986541004548999999
Q gi|254780217|r  233 -DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-------FILKEICKSAKAAALSGQLEEADQIAQI  304 (347)
Q Consensus       233 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~~~~~~~~~~~~~~~~~l~~~  304 (347)
T Consensus       228 ~~i~~~~v~~~lG~~d----~~~~~~l~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  303 (523)
T PRK08451        228 NAITESKVADMLGLLD----PSKIEDFFQAILNKDKEKLFELLAELEDYEAEMVLDEMLLFLKEKLLSKDSEFSILIYER  303 (523)
T ss_pred             CCCCHHHHHHHHCCCC----HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             9877999999858889----999999999999458999999999985318999999999999999715785437899999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9999999998762279979999999999972786
Q gi|254780217|r  305 YFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND  338 (347)
Q Consensus       305 ~~~i~~~~~~~~~~NLd~~~~ll~ll~~l~~~~~  338 (347)
T Consensus       304 ~~~il~~~~~~~~~~~~~~~~l~~~~~km~e~~~  337 (523)
T PRK08451        304 FFRILSSAKSLLKEGADDGFVLLLMLFKMKEALK  337 (523)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf             9999999999863078861249999999986036