HHsearch alignment for GI: 254780217 and conserved domain: PRK08451
>PRK08451 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=0 Score=483.30 Aligned_cols=319 Identities=22% Similarity=0.329 Sum_probs=242.8
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
T Consensus 3 ~LarKYRP~~F~evIGQe~iv~~L~nAi~~~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~s------ 76 (523)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQ------ 76 (523)
T ss_pred HHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 14442089965440494999999999998599671587578998688999999999975999999898887888------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
T Consensus 77 C~~i~~g~hpDViEiDaa---------sn~gID~IReLie~~~~~P~~gryKV~IIDEah~Lt~~A~NALLKTLEEPP~~ 147 (523)
T PRK08451 77 CQAALEGRHIDIIEMDAA---------SNRGIDDIRNLIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (523)
T ss_pred HHHHHCCCCCCEEEECCC---------CCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999864899985510553---------33689999999997235886797279998260304899999999970389878
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH----
Q ss_conf 41676504433573025203698864799989999999----9727888967899999975989789998814577----
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC---- 232 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~---- 232 (347)
T Consensus 148 vvFILaTTep~KLp~TIlSRCQ~f~Fk~I~~~~I~~~L~~I~~~E~i~~e~~AL~~IA~~a~GslRDalslLdQ~i~~~~ 227 (523)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILNKEGVSYEPEALEILARSGSGSLRDTLTLLDQAIIFCK 227 (523)
T ss_pred CEEEEECCCHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 37999759947684888742031103379999999999999998399879999999999778948689879999998479
Q ss_pred -HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf -99999999984032343228999999999831676999999999-------9999999999986541004548999999
Q gi|254780217|r 233 -DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-------FILKEICKSAKAAALSGQLEEADQIAQI 304 (347)
Q Consensus 233 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 304 (347)
T Consensus 228 ~~i~~~~v~~~lG~~d----~~~~~~l~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 303 (523)
T PRK08451 228 NAITESKVADMLGLLD----PSKIEDFFQAILNKDKEKLFELLAELEDYEAEMVLDEMLLFLKEKLLSKDSEFSILIYER 303 (523)
T ss_pred CCCCHHHHHHHHCCCC----HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 9877999999858889----999999999999458999999999985318999999999999999715785437899999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998762279979999999999972786
Q gi|254780217|r 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 (347)
Q Consensus 305 ~~~i~~~~~~~~~~NLd~~~~ll~ll~~l~~~~~ 338 (347)
T Consensus 304 ~~~il~~~~~~~~~~~~~~~~l~~~~~km~e~~~ 337 (523)
T PRK08451 304 FFRILSSAKSLLKEGADDGFVLLLMLFKMKEALK 337 (523)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9999999999863078861249999999986036