HHsearch alignment for GI: 254780217 and conserved domain: PRK08533
>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=96.48 E-value=0.0072 Score=42.73 Aligned_cols=138 Identities=22% Similarity=0.225 Sum_probs=71.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC-CCCHHHHHHHCC--------CCCCEEEECCCCHHHCC
Q ss_conf 816631179898889999999999817799886431210126-788679999678--------98754530010001013
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD-PCSPFVKQMASH--------ALHDFLYLSYSLNPKTG 104 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~-~~~~~~~~i~~~--------~hpd~~~i~~~~~~k~~ 104 (347)
T Consensus 24 gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~----~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l~~i~~~~~---- 95 (230)
T PRK08533 24 GSIILIEGDESTGKSILSQRLAYGFLQNGYS----VSYVSSQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPL---- 95 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCE----EEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCEEEEECCCC----
T ss_conf 8489998689987899999999999878986----99999438999999999986998179975796799961343----
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC-----CHHHHHHHHHHHHHCCCCCCEEEEECCCCCC----CH
Q ss_conf 42123237887554431022211112103532205542-----4000145677766303434167650443357----30
Q gi|254780217|r 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM-----NRNAANALLKSLEEPPQKVLFILISHASPTI----LS 175 (347)
Q Consensus 105 ~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~l-----n~~AaNALLK~LEEPp~~t~fiLit~~~~~i----l~ 175 (347)
T Consensus 96 ----~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l~s~gktIilTv~p~~~~e~~l~ 171 (230)
T PRK08533 96 ----LSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQIRDLMAFFKRISSLNKVIILTANPKELPESVLL 171 (230)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH
T ss_conf ----3540457899999973266437989999053188516777899999999999998589889999563313624544
Q ss_pred HHHCEEEE
Q ss_conf 25203698
Q gi|254780217|r 176 TIRSRCLS 183 (347)
Q Consensus 176 TI~SRc~~ 183 (347)
T Consensus 172 ~lrs~aDv 179 (230)
T PRK08533 172 ILRTASTI 179 (230)
T ss_pred HHHEEEEE
T ss_conf 20410489