HHsearch alignment for GI: 254780217 and conserved domain: PRK08853
>PRK08853 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=0 Score=443.43 Aligned_cols=249 Identities=23% Similarity=0.402 Sum_probs=216.9
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
T Consensus 5 vlark~RP~~f~e~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~------ 78 (717)
T PRK08853 5 ALARKWRPTQFKEVVGQSHVLTALENALAHNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCAT------ 78 (717)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC------
T ss_conf 77765179856551385999999999997099740576108898889899999999867899999997888702------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
T Consensus 79 C~~i~~g~~~d~~EiDaAs~---------~~vdd~rel~~~~~y~p~~~~yKvyiiDEvHmls~~afnAlLKtlEEPP~h 149 (717)
T PRK08853 79 CKEIDEGRFVDLLEIDAASR---------TKVEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEY 149 (717)
T ss_pred HHHHHCCCCCCEEEECCCCC---------CCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 67674478775245405656---------788999999985554887785479998305443899999998760378756
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH----
Q ss_conf 41676504433573025203698864799989999999----9727888967899999975989789998814577----
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC---- 232 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~---- 232 (347)
T Consensus 150 v~FilaTT~~~kip~TilSRc~~f~l~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~Rdalsl~dqaia~~~ 229 (717)
T PRK08853 150 VKFLLATTDPQKLPVTILSRCLQFHLKPISVDQIHQQLDFVLDKEQVSAEARALGLIAHAADGSMRDALSLTDQAIALGN 229 (717)
T ss_pred EEEEEECCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 48998438734373889876544232689999999999999997598769999999999768837788889999999658
Q ss_pred -HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHH
Q ss_conf -999999999840323432289999999998316769
Q gi|254780217|r 233 -DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQK 268 (347)
Q Consensus 233 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (347)
T Consensus 230 g~~~~~~v~~mlg~~d~----~~~~~ll~al~~~d~~ 262 (717)
T PRK08853 230 GQVTTDIVSHMLGTLDT----DQAIHLLEAISSKQPQ 262 (717)
T ss_pred CCCCHHHHHHHHCCCCH----HHHHHHHHHHHHCCHH
T ss_conf 97169999998588877----8999999999955899