HHsearch alignment for GI: 254780217 and conserved domain: PRK09111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=0 Score=446.69 Aligned_cols=215 Identities=25% Similarity=0.354 Sum_probs=202.5
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC-----CCCCCCHHHCCCC
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779-----9886431210126
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP-----DFSKAPVRMCNPD 75 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~-----~~~~~~~~~~~~~ 75 (347)
T Consensus 12 ~l~~k~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~- 90 (600)
T PRK09111 12 VLARKYRPQTFDDLIGQEAMVRTLRNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEH- 90 (600)
T ss_pred EEEECCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH-
T ss_conf 4321017987766338599999999999729842047645789878999999999996698876668998898998865-
Q ss_pred CCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 78867999967898754530010001013421232378875544310222111121035322055424000145677766
Q gi|254780217|r 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 (347)
Q Consensus 76 ~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE 155 (347)
T Consensus 91 -----c~~i~~~~~~d~~e~daas~~---------~v~~~r~~~~~~~~~p~~~~~kv~iidevhmls~~afnallktle 156 (600)
T PRK09111 91 -----CQAIMEGRHVDVIEMDAASHT---------GVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE 156 (600)
T ss_pred -----HHHHHCCCCCCEEEEECCCCC---------CHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -----898866899875885155457---------888999999860538877754699960011057999999998762
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 3034341676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 156 EPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
T Consensus 157 epp~~~~fi~att~~~k~p~ti~src~~f~~~~~~~~~~~~~l~~i~~~e~~~~~~~al~~ia~~a~GS~RDaLSlLDQ 235 (600)
T PRK09111 157 EPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEAEVLAAHLARIAEKEGVEVEPDALALIARAAEGSVRDGLSLLDQ 235 (600)
T ss_pred CCCCCEEEEEECCCHHHCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 5986549999628534375899854412010579999999999999986076866779999999748984218999999