HHsearch alignment for GI: 254780217 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=548.37 Aligned_cols=335 Identities=43% Similarity=0.701 Sum_probs=315.6
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 66555587565610929999999999982889816631179898889999999999817799886431210126788679
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~ 81 (347)
T Consensus 13 ~~g~p~Pr~~~~liGq~~~~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~ 92 (352)
T PRK09112 13 IDGVPSPSENNRLFGHEEARAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLW 92 (352)
T ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 89998964464627869999999999984996524653589980899999999999866998666865567888787789
Q ss_pred HHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99967898754530010001013421232378875544310222111121035322055424000145677766303434
Q gi|254780217|r 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 (347)
Q Consensus 82 ~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t 161 (347)
T Consensus 93 r~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEPp~~~ 172 (352)
T PRK09112 93 RQIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (352)
T ss_pred HHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 99974899995655343220214543357779999999984548866880699981878746999999999853489874
Q ss_pred CEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCC---CCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 1676504433573025203698864799989999999972788---8967899999975989789998814577999999
Q gi|254780217|r 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM---GWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 (347)
Q Consensus 162 ~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~---~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~ 238 (347)
T Consensus 173 ~fiLit~~~~~ll~TI~SRCq~~~f~pL~~~di~~~L~~i~~~~~~~~~~~~~~l~~~a~GS~~~Al~L~~~~gl~i~~~ 252 (352)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSKQGISAGEETEALLQRSEGSVRKALLLLNYGGLEIIDT 252 (352)
T ss_pred EEEEEECCHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHH
T ss_conf 89988699777768999743321488939899999999875126899879999999870899889998744877999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99984032343228999999999831676999999999999999999998654100454899999999999999987622
Q gi|254780217|r 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 (347)
Q Consensus 239 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ 318 (347)
T Consensus 253 ~~~ll~~--p~~d~~~~~~la~~~~~~~~~~~~~~~~~~l~~~l~~~ar~~a~~~~~~~a~~~a~~~~~~~~~~~~~~a~ 330 (352)
T PRK09112 253 VDQLLAG--SGFDLPKAHALAGALSGRESEVQFDLFRDHLLDRIANEARRAAESGQLALAERWARFWSELHEEIVEAETY 330 (352)
T ss_pred HHHHHHC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999808--99998999999999847774789999999999999999998501588378999999999999999988987
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 79979999999999972786
Q gi|254780217|r 319 NLDRRQMIFHLLSKARECND 338 (347)
Q Consensus 319 NLd~~~~ll~ll~~l~~~~~ 338 (347)
T Consensus 331 NLD~~~~il~~~~~i~~a~r 350 (352)
T PRK09112 331 NLDRKQTVISLLERIHRAFR 350 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 77879999999999999861