HHsearch alignment for GI: 254780217 and conserved domain: PRK09112

>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=100.00  E-value=0  Score=548.37  Aligned_cols=335  Identities=43%  Similarity=0.701  Sum_probs=315.6

Q ss_pred             CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH
Q ss_conf             66555587565610929999999999982889816631179898889999999999817799886431210126788679
Q gi|254780217|r    2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV   81 (347)
Q Consensus         2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~   81 (347)
T Consensus        13 ~~g~p~Pr~~~~liGq~~~~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~   92 (352)
T PRK09112         13 IDGVPSPSENNRLFGHEEARAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLW   92 (352)
T ss_pred             CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             89998964464627869999999999984996524653589980899999999999866998666865567888787789


Q ss_pred             HHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf             99967898754530010001013421232378875544310222111121035322055424000145677766303434
Q gi|254780217|r   82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV  161 (347)
Q Consensus        82 ~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t  161 (347)
T Consensus        93 r~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEPp~~~  172 (352)
T PRK09112         93 RQIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA  172 (352)
T ss_pred             HHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             99974899995655343220214543357779999999984548866880699981878746999999999853489874


Q ss_pred             CEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCC---CCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf             1676504433573025203698864799989999999972788---8967899999975989789998814577999999
Q gi|254780217|r  162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM---GWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS  238 (347)
Q Consensus       162 ~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~---~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~  238 (347)
T Consensus       173 ~fiLit~~~~~ll~TI~SRCq~~~f~pL~~~di~~~L~~i~~~~~~~~~~~~~~l~~~a~GS~~~Al~L~~~~gl~i~~~  252 (352)
T PRK09112        173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSKQGISAGEETEALLQRSEGSVRKALLLLNYGGLEIIDT  252 (352)
T ss_pred             EEEEEECCHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHH
T ss_conf             89988699777768999743321488939899999999875126899879999999870899889998744877999999


Q ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99984032343228999999999831676999999999999999999998654100454899999999999999987622
Q gi|254780217|r  239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY  318 (347)
Q Consensus       239 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~  318 (347)
T Consensus       253 ~~~ll~~--p~~d~~~~~~la~~~~~~~~~~~~~~~~~~l~~~l~~~ar~~a~~~~~~~a~~~a~~~~~~~~~~~~~~a~  330 (352)
T PRK09112        253 VDQLLAG--SGFDLPKAHALAGALSGRESEVQFDLFRDHLLDRIANEARRAAESGQLALAERWARFWSELHEEIVEAETY  330 (352)
T ss_pred             HHHHHHC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999808--99998999999999847774789999999999999999998501588378999999999999999988987


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q ss_conf             79979999999999972786
Q gi|254780217|r  319 NLDRRQMIFHLLSKARECND  338 (347)
Q Consensus       319 NLd~~~~ll~ll~~l~~~~~  338 (347)
T Consensus       331 NLD~~~~il~~~~~i~~a~r  350 (352)
T PRK09112        331 NLDRKQTVISLLERIHRAFR  350 (352)
T ss_pred             CCCHHHHHHHHHHHHHHHHH
T ss_conf             77879999999999999861