HHsearch alignment for GI: 254780217 and conserved domain: PRK09183

>PRK09183 transposase/IS protein; Provisional.
Probab=97.33  E-value=0.00063  Score=51.28  Aligned_cols=99  Identities=14%  Similarity=0.209  Sum_probs=60.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf             81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r   34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD  113 (347)
Q Consensus        34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd  113 (347)
T Consensus       101 ~~Nvil~G~~GtGKThLA~Alg~~A~-~~------------------------G~--~v~f~~~~~-----------L~~  142 (258)
T PRK09183        101 NENIVLLGPSGVGKTHLAIALGYEAV-RA------------------------GI--KVRFTTAAD-----------LLL  142 (258)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHH-HC------------------------CC--EEEEEEHHH-----------HHH
T ss_conf             88679989999868999999999999-87------------------------99--399978999-----------999


Q ss_pred             HHHHHHHHCCCC----CCCCCCHHHHHHHHH--HCCHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             875544310222----111121035322055--424000145677766303434167650443
Q gi|254780217|r  114 EIRRIRYFLSLT----ANTGYWRVIMIDPVD--GMNRNAANALLKSLEEPPQKVLFILISHAS  170 (347)
Q Consensus       114 ~IR~l~~~~~~~----~~~~~~Ki~IId~ad--~ln~~AaNALLK~LEEPp~~t~fiLit~~~  170 (347)
T Consensus       143 ~L~~a~~~~~~~~~l~r~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye~~S~IiTSn~~  205 (258)
T PRK09183        143 QLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGAMILTSNLP  205 (258)
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             999998768599999987434651443133154688889999999999985767789988999