HHsearch alignment for GI: 254780217 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=97.33 E-value=0.00063 Score=51.28 Aligned_cols=99 Identities=14% Similarity=0.209 Sum_probs=60.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
T Consensus 101 ~~Nvil~G~~GtGKThLA~Alg~~A~-~~------------------------G~--~v~f~~~~~-----------L~~ 142 (258)
T PRK09183 101 NENIVLLGPSGVGKTHLAIALGYEAV-RA------------------------GI--KVRFTTAAD-----------LLL 142 (258)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH-HC------------------------CC--EEEEEEHHH-----------HHH
T ss_conf 88679989999868999999999999-87------------------------99--399978999-----------999
Q ss_pred HHHHHHHHCCCC----CCCCCCHHHHHHHHH--HCCHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 875544310222----111121035322055--424000145677766303434167650443
Q gi|254780217|r 114 EIRRIRYFLSLT----ANTGYWRVIMIDPVD--GMNRNAANALLKSLEEPPQKVLFILISHAS 170 (347)
Q Consensus 114 ~IR~l~~~~~~~----~~~~~~Ki~IId~ad--~ln~~AaNALLK~LEEPp~~t~fiLit~~~ 170 (347)
T Consensus 143 ~L~~a~~~~~~~~~l~r~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye~~S~IiTSn~~ 205 (258)
T PRK09183 143 QLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGAMILTSNLP 205 (258)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 999998768599999987434651443133154688889999999999985767789988999