HHsearch alignment for GI: 254780217 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.

Probab=94.02  E-value=0.046  Score=36.24  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=25.9

Q ss_pred             HHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999828-8981663117989888999999999981
Q gi|254780217|r   24 LSQYYCSG-RMHHALLFEGEQGIGKATLGFRYAGHVL   59 (347)
Q Consensus        24 L~~~~~~~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll   59 (347)
T Consensus       255 LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a  291 (501)
T PRK09302        255 LDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAAC  291 (501)
T ss_pred             HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             7887259975894699988999888999999999998