HHsearch alignment for GI: 254780217 and conserved domain: PRK09354
>PRK09354 recA recombinase A; Provisional.
Probab=90.27 E-value=0.33 Score=29.33 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=0.0
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHH
Q ss_conf 11798988899999999998177998864312101267886799996789875453001000101342123237887554
Q gi|254780217|r 39 FEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 (347)
Q Consensus 39 f~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l 118 (347)
T Consensus 65 i~G~esSGKTtlal~~iae--aQk~Gg~~a~iDaE~ald~~~a~~l--GVd~d~llv~qpd~-----------~Eqal~i 129 (350)
T PRK09354 65 IYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPVYAKKL--GVDIDNLLVSQPDT-----------GEQALEI 129 (350)
T ss_pred EECCCCCCHHHHHHHHHHH--HHHCCCCEEEEEECCCCCHHHHHHC--CCCHHHEEEECCCH-----------HHHHHHH
T ss_conf 9889877799999999999--9975994799960002798899984--97715717856867-----------9999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHCCHHH
Q ss_conf 4310222111121035322055424000
Q gi|254780217|r 119 RYFLSLTANTGYWRVIMIDPVDGMNRNA 146 (347)
Q Consensus 119 ~~~~~~~~~~~~~Ki~IId~ad~ln~~A 146 (347)
T Consensus 130 ~e~Lvrsg~vd---~IVvDSVaAL~pk~ 154 (350)
T PRK09354 130 ADALVRSGAVD---LIVVDSVAALVPKA 154 (350)
T ss_pred HHHHHHCCCCC---EEEEECCCCCCCHH
T ss_conf 99998548841---89982533457688