HHsearch alignment for GI: 254780217 and conserved domain: PRK10787

>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=98.51  E-value=4.2e-07  Score=76.86  Aligned_cols=158  Identities=18%  Similarity=0.278  Sum_probs=96.0

Q ss_pred             HHHCCHHHHHHHHHHHHHCCC-----CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHC
Q ss_conf             561092999999999998288-----981663117989888999999999981779988643121012678867999967
Q gi|254780217|r   12 QRLFGHEDIEKFLSQYYCSGR-----MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS   86 (347)
Q Consensus        12 ~~i~G~~~~~~~L~~~~~~~~-----l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~   86 (347)
T Consensus       322 ~dHyGL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~--rislGGv~DeaeirGHrrTYv  399 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV--RMALGGVRDEAEIRGHRRTYI  399 (784)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE--EEECCCCCCHHHHCCCCCCCC
T ss_conf             543065779999999999998624677877996469987724699999998589869--980688788888256433434


Q ss_pred             CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH----HHHHHHHHHHHHCC----
Q ss_conf             8987545300100010134212323788755443102221111210353220554240----00145677766303----
Q gi|254780217|r   87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR----NAANALLKSLEEPP----  158 (347)
Q Consensus        87 ~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----~AaNALLK~LEEPp----  158 (347)
T Consensus       400 gampGri------------------i~~l-------~~a~~~--nPv~llDEiDK~~~~~~Gdp~salLEvLD-peQN~~  451 (784)
T PRK10787        400 GSMPGKL------------------IQKM-------AKVGVK--NPLFLLDEIDKMSSDMRGDPASALLEVLD-PEQNVA  451 (784)
T ss_pred             CCCCHHH------------------HHHH-------HHHCCC--CCEEEEHHHHHHCCCCCCCHHHHHHHHCC-HHHCCC
T ss_conf             4368389------------------9999-------974898--85665003555224558998899998459-765564


Q ss_pred             ------------CCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHH
Q ss_conf             ------------434167650443357302520369886479998999999997
Q gi|254780217|r  159 ------------QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ  200 (347)
Q Consensus       159 ------------~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~  200 (347)
T Consensus       452 F~Dhyl~~~~DlS~v~Fi~TaN~~~-ip~pLlDRmE~i~~~gYt~~eK~~Ia~~  504 (784)
T PRK10787        452 FSDHYLEVDYDLSDVMFVATSNSMN-IPAPLLDRMEVIRLSGYTEDEKLNIAKR  504 (784)
T ss_pred             CCCCEEECCCCHHHEEEEEECCCCC-CCHHHHHHEEEEEECCCCHHHHHHHHHH
T ss_conf             0003220464522258997327677-8767763121554116767889999997