HHsearch alignment for GI: 254780217 and conserved domain: PRK10787
>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=98.51 E-value=4.2e-07 Score=76.86 Aligned_cols=158 Identities=18% Similarity=0.278 Sum_probs=96.0
Q ss_pred HHHCCHHHHHHHHHHHHHCCC-----CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHC
Q ss_conf 561092999999999998288-----981663117989888999999999981779988643121012678867999967
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR-----MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS 86 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~-----l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (347)
T Consensus 322 ~dHyGL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~--rislGGv~DeaeirGHrrTYv 399 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV--RMALGGVRDEAEIRGHRRTYI 399 (784)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE--EEECCCCCCHHHHCCCCCCCC
T ss_conf 543065779999999999998624677877996469987724699999998589869--980688788888256433434
Q ss_pred CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH----HHHHHHHHHHHHCC----
Q ss_conf 8987545300100010134212323788755443102221111210353220554240----00145677766303----
Q gi|254780217|r 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR----NAANALLKSLEEPP---- 158 (347)
Q Consensus 87 ~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----~AaNALLK~LEEPp---- 158 (347)
T Consensus 400 gampGri------------------i~~l-------~~a~~~--nPv~llDEiDK~~~~~~Gdp~salLEvLD-peQN~~ 451 (784)
T PRK10787 400 GSMPGKL------------------IQKM-------AKVGVK--NPLFLLDEIDKMSSDMRGDPASALLEVLD-PEQNVA 451 (784)
T ss_pred CCCCHHH------------------HHHH-------HHHCCC--CCEEEEHHHHHHCCCCCCCHHHHHHHHCC-HHHCCC
T ss_conf 4368389------------------9999-------974898--85665003555224558998899998459-765564
Q ss_pred ------------CCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHH
Q ss_conf ------------434167650443357302520369886479998999999997
Q gi|254780217|r 159 ------------QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 (347)
Q Consensus 159 ------------~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~ 200 (347)
T Consensus 452 F~Dhyl~~~~DlS~v~Fi~TaN~~~-ip~pLlDRmE~i~~~gYt~~eK~~Ia~~ 504 (784)
T PRK10787 452 FSDHYLEVDYDLSDVMFVATSNSMN-IPAPLLDRMEVIRLSGYTEDEKLNIAKR 504 (784)
T ss_pred CCCCEEECCCCHHHEEEEEECCCCC-CCHHHHHHEEEEEECCCCHHHHHHHHHH
T ss_conf 0003220464522258997327677-8767763121554116767889999997