HHsearch alignment for GI: 254780217 and conserved domain: PRK10875
>PRK10875 recD exonuclease V subunit alpha; Provisional.
Probab=96.85 E-value=0.0016 Score=48.06 Aligned_cols=127 Identities=16% Similarity=0.243 Sum_probs=67.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCC------CCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCC
Q ss_conf 1663117989888999999999981779988------6431210126788679999678987545300100010134212
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFS------KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRT 108 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~------~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~ 108 (347)
T Consensus 163 ~~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaAPTGK--------AAaRL~Esi~~~~~~l~~--~~---~~~~ 229 (607)
T PRK10875 163 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGK--------AAARLTESLGKALRQLPL--TD---EQKK 229 (607)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH--------HHHHHHHHHHHHHHHCCC--CH---HHHH
T ss_conf 7789967999877889999999999964589970899882289--------999999999878753476--65---6663
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCC----------HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEE-------CCCC
Q ss_conf 32378875544310222111121----------035322055424000145677766303434167650-------4433
Q gi|254780217|r 109 VITVDEIRRIRYFLSLTANTGYW----------RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS-------HASP 171 (347)
Q Consensus 109 ~I~vd~IR~l~~~~~~~~~~~~~----------Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit-------~~~~ 171 (347)
T Consensus 230 ~~p-~~a~TiHRLLg~~p~~~~f~~~~~nPL~~DvlIVDEASMVDl~Lm~~LL~Al---p~~aRLILvGD~dQLpSVgaG 305 (607)
T PRK10875 230 RIP-EDASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDRDQLASVEAG 305 (607)
T ss_pred CCC-CCCEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC---CCCCEEEEECCHHHCCCCCCC
T ss_conf 376-5566589752967898765657799998898999073366599999999828---999889996562324788888
Q ss_pred CCCHHHH
Q ss_conf 5730252
Q gi|254780217|r 172 TILSTIR 178 (347)
Q Consensus 172 ~il~TI~ 178 (347)
T Consensus 306 aVL~DL~ 312 (607)
T PRK10875 306 AVLGDIC 312 (607)
T ss_pred CCHHHHH
T ss_conf 2179999