HHsearch alignment for GI: 254780217 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=98.94 E-value=2.3e-08 Score=87.04 Aligned_cols=195 Identities=17% Similarity=0.133 Sum_probs=123.2
Q ss_pred CCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCC
Q ss_conf 75656109299999999999828898166311798988899999999998177998864312101267886799996789
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (347)
T Consensus 183 gklDPviGR~~Ei~r~i~iL~Rr~KNN-piLvGepGVGKTAIvEGLA~rI~~g~VP~~L----~~~-------------- 243 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCRRRKNN-PLLVGESGVGKTAIAEGLAWRIVQGDVPEVM----ADC-------------- 243 (758)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHHCCCCCHHH----CCC--------------
T ss_conf 899987384899999999997632589-6021699986999999999999738997655----898--------------
Q ss_pred CCCEEEECCCCHHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCCHHHHHHHHHHCC---------HHHHHHHHHHHHHCC
Q ss_conf 8754530010001013421232378-875544310222111121035322055424---------000145677766303
Q gi|254780217|r 89 LHDFLYLSYSLNPKTGKWRTVITVD-EIRRIRYFLSLTANTGYWRVIMIDPVDGMN---------RNAANALLKSLEEPP 158 (347)
Q Consensus 89 hpd~~~i~~~~~~k~~~~~~~I~vd-~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln---------~~AaNALLK~LEEPp 158 (347)
T Consensus 244 --~i~~Ldl~~LiAGtkyRGe--fEeRlk~vi~e~~~----~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~Lar-- 313 (758)
T PRK11034 244 --TIYSLDIGSLLAGTKYRGD--FEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-- 313 (758)
T ss_pred --EEEEEEHHHHHCCCCCCHH--HHHHHHHHHHHHHH----CCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHC--
T ss_conf --8998458778616864154--99999999999985----7985999804344226887677764678874578746--
Q ss_pred CCCCEEEEECCC--CCCC---HHHHCEEEEEECCCCCHHHHHHHHHH--------HCCCCCHHHHHHHHHHCCC------
Q ss_conf 434167650443--3573---02520369886479998999999997--------2788896789999997598------
Q gi|254780217|r 159 QKVLFILISHAS--PTIL---STIRSRCLSIKFNSLSENNLYKALEQ--------LKIMGWDSKRDFVKIAAYG------ 219 (347)
Q Consensus 159 ~~t~fiLit~~~--~~il---~TI~SRc~~i~f~~l~~~~~~~~L~~--------~~~~~~~~~~~~~~~~s~G------ 219 (347)
T Consensus 314 G~l~~IgaTT~~EYrk~iekD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~al~~av~Ls~rYi~dr~ 393 (758)
T PRK11034 314 GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_pred CCCEEEEECCHHHHHHCCCCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCC
T ss_conf 97239994377998750321478884282653189998999999998999873236957743899999999976502688
Q ss_pred CHHHHHHHHCCCH
Q ss_conf 9789998814577
Q gi|254780217|r 220 SVARAIKILHYDC 232 (347)
Q Consensus 220 s~~~A~~ll~~~~ 232 (347)
T Consensus 394 lPDKAIdllDea~ 406 (758)
T PRK11034 394 LPDKAIDVIDEAG 406 (758)
T ss_pred CCHHHHHHHHHHH
T ss_conf 9619999999998