HHsearch alignment for GI: 254780217 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=98.45 E-value=1.3e-05 Score=64.74 Aligned_cols=132 Identities=15% Similarity=0.303 Sum_probs=89.1
Q ss_pred HHHCCHHHHHHHHHHHHHCCC--------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHH
Q ss_conf 561092999999999998288--------981663117989888999999999981779988643121012678867999
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR--------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~--------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~ 83 (347)
T Consensus 458 ~~viGQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L-~-~~lir~DMSEy~--e~hsvsrL 533 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-G-IELLRFDMSEYM--ERHTVSRL 533 (758)
T ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH-H-HHHHCCCHHHHC--CHHHHHHH
T ss_conf 7874549999999999999863888999970589997899877799999999998-6-677214266531--20147774
Q ss_pred HHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC-----
Q ss_conf 967898754530010001013421232378875544310222111121035322055424000145677766303-----
Q gi|254780217|r 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP----- 158 (347)
Q Consensus 84 i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp----- 158 (347)
T Consensus 534 i--GaPPGYVGy~----e-GG-----~Lte~V-------r~~P----ysVvL~DEIEKAhpdV~nilLQvlD~G~LtD~~ 590 (758)
T PRK11034 534 I--GAPPGYVGFD----Q-GG-----LLTDAV-------IKHP----HAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNN 590 (758)
T ss_pred C--CCCCCCCCCC----C-CC-----CCCHHH-------HHCC----CEEEEEHHHHHHCHHHHHHHHHHCCCCCCCCCC
T ss_conf 4--8998666767----7-77-----012878-------7398----779973367563989999887323778301799
Q ss_pred ------CCCCEEEEECCC
Q ss_conf ------434167650443
Q gi|254780217|r 159 ------QKVLFILISHAS 170 (347)
Q Consensus 159 ------~~t~fiLit~~~ 170 (347)
T Consensus 591 Gr~vdF~NtiIImTSN~G 608 (758)
T PRK11034 591 GRKADFRNVVLVMTTNAG 608 (758)
T ss_pred CCEEECEEEEEEEECCCC
T ss_conf 998844001999825617