HHsearch alignment for GI: 254780217 and conserved domain: PRK11331

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.

Probab=97.22  E-value=0.002  Score=47.18  Aligned_cols=40  Identities=15%  Similarity=0.235  Sum_probs=28.9

Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             9999999982889816631179898889999999999817799
Q gi|254780217|r   21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD   63 (347)
Q Consensus        21 ~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~   63 (347)
T Consensus       184 i~~~~~sLktK--kn-vIL~G~pGtGKT~lAk~lA~~l~g~~~  223 (459)
T PRK11331        184 IETILKRLTIK--KN-IILQGPPGVGKTFVARRLAYLLTGEKA  223 (459)
T ss_pred             HHHHHHHHCCC--CC-EEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             99999985458--82-796589998878999999999707887