HHsearch alignment for GI: 254780217 and conserved domain: PRK11608
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=97.48 E-value=0.00048 Score=52.22 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=69.2
Q ss_pred HHHHCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH--HCCCCCCCHHHHHHHCC
Q ss_conf 65610929999999999982-8898166311798988899999999998177998864312--10126788679999678
Q gi|254780217|r 11 NQRLFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR--MCNPDPCSPFVKQMASH 87 (347)
Q Consensus 11 ~~~i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~--~~~~~~~~~~~~~i~~~ 87 (347)
T Consensus 5 ~~~liG~S~~m~~v~~~~~~~A~~~~pVLI~GE~GtGK~~~Ar~IH~----~S~r~~~pfi~v~C~~l~~----~~~e~- 75 (325)
T PRK11608 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHY----LSSRWQGPFISLNCAALNE----NLLDS- 75 (325)
T ss_pred CCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH----CCCCCCCCCEEEECCCCCH----HHHHH-
T ss_conf 89985899999999999999968899989889898379999999996----5886799977887798997----78899-
Q ss_pred CCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC----------
Q ss_conf 9875453001000101342123237887554431022211112103532205542400014567776630----------
Q gi|254780217|r 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP---------- 157 (347)
Q Consensus 88 ~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP---------- 157 (347)
T Consensus 76 -----~LFG~---~~-g~~---~~~~--~~~~g~le~--a~gG--TL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~ 137 (325)
T PRK11608 76 -----ELFGH---EA-GAF---TGAQ--KRHPGRFER--ADGG--TLFLDELATAPMLVQEKLLRVIEYGELERVGGSQP 137 (325)
T ss_pred -----HHCCC---CC-CCC---CCCC--CCCCCHHHC--CCCC--EEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf -----87277---55-676---7753--246873435--6898--69973745479999999999986490885799876
Q ss_pred -CCCCCEEEEECC
Q ss_conf -343416765044
Q gi|254780217|r 158 -PQKVLFILISHA 169 (347)
Q Consensus 158 -p~~t~fiLit~~ 169 (347)
T Consensus 138 ~~~~~RiIa~t~~ 150 (325)
T PRK11608 138 LQVNVRLVCATNA 150 (325)
T ss_pred CCCCEEEEECCCH
T ss_conf 6564688713322