HHsearch alignment for GI: 254780217 and conserved domain: PRK11664
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=94.30 E-value=0.36 Score=29.10 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCH----HHHHHHC--CCCCCE
Q ss_conf 9999999999828898166311798988899999999998177998864312101267886----7999967--898754
Q gi|254780217|r 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP----FVKQMAS--HALHDF 92 (347)
Q Consensus 19 ~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~----~~~~i~~--~~hpd~ 92 (347)
T Consensus 8 ~~~~~i~~~l~~~~---~~vl~a~tGsGKtTqv---P~~ll~~~~~~g~--I~~~-qPRR~AA~s~A~RvA~e~~e~~G~ 78 (812)
T PRK11664 8 AVLPELLTALKTAP---QVLLKAPTGAGKSTWL---PLQLLQQGGINGK--IIML-EPRRLAARNVAQRLAEQLGEKPGE 78 (812)
T ss_pred HHHHHHHHHHHHCC---EEEEEECCCCCHHHHH---HHHHHHCCCCCCC--EEEE-CCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999999799---7999908999989999---9999964688993--8993-883999999999999972999998
Q ss_pred EEECCC--CHHHCCCCCCCCCH--HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH--HHHHHHH-HHHCCCCCCEEE
Q ss_conf 530010--00101342123237--8875544310222111121035322055424000--1456777-663034341676
Q gi|254780217|r 93 LYLSYS--LNPKTGKWRTVITV--DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA--ANALLKS-LEEPPQKVLFIL 165 (347)
Q Consensus 93 ~~i~~~--~~~k~~~~~~~I~v--d~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A--aNALLK~-LEEPp~~t~fiL 165 (347)
T Consensus 79 -~VGY~vR~e~~~-s~~Tri~~~T~Gi--Llr~l~~dp~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~r~dLklvv 154 (812)
T PRK11664 79 -TVGYRMRAESKV-GPNTRLEVVTEGI--LTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred -EEEEEECCCCCC-CCCCEEEEECHHH--HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf -675782567788-9985799975589--999972497767788899957546875189999999999986189828999
Q ss_pred E
Q ss_conf 5
Q gi|254780217|r 166 I 166 (347)
Q Consensus 166 i 166 (347)
T Consensus 155 M 155 (812)
T PRK11664 155 M 155 (812)
T ss_pred E
T ss_conf 8