HHsearch alignment for GI: 254780217 and conserved domain: PRK11823
>PRK11823 DNA repair protein RadA; Provisional.
Probab=95.32 E-value=0.044 Score=36.40 Aligned_cols=165 Identities=17% Similarity=0.174 Sum_probs=80.7
Q ss_pred CCCCHHHHCCHHHHH------HHHHHHHHCCCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCC------
Q ss_conf 587565610929999------9999999828898-166311798988899999999998177998864312101------
Q gi|254780217|r 7 DPVYNQRLFGHEDIE------KFLSQYYCSGRMH-HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN------ 73 (347)
Q Consensus 7 ~p~~~~~i~G~~~~~------~~L~~~~~~~~l~-ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~------ 73 (347)
T Consensus 57 ~~~~l~~v~~~-~~~R~~Tgi~ElDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la-~~~~vLYvSGEES~~Qik~ 134 (454)
T PRK11823 57 KPVKLSDVEAE-EEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALA-AGGKVLYVSGEESLQQIKL 134 (454)
T ss_pred CCEEHHHCCCC-CCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCHHHHHHHH
T ss_conf 75652442566-655323785566522158720664899507998889999999999985-5995799815015789999
Q ss_pred ----------------CCCCCHHHHHHHCCCCCCEEEECCC---CHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf ----------------2678867999967898754530010---001013421232378875544310222111121035
Q gi|254780217|r 74 ----------------PDPCSPFVKQMASHALHDFLYLSYS---LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 (347)
Q Consensus 74 ----------------~~~~~~~~~~i~~~~hpd~~~i~~~---~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~ 134 (347)
T Consensus 135 RA~RLg~~~~~l~l~~et~l~~Il~~i-~~~~P~~lIIDSIQT~~~~~~--~s~pGsvsQVre~a~~L~~~AK~~~i~~~ 211 (454)
T PRK11823 135 RAERLGLPSDNLYLLAETNLEDILATI-EEEKPDLVVIDSIQTMYSPEL--ESAPGSVSQVRECAAELTRLAKQSGIAVF 211 (454)
T ss_pred HHHHHCCCCCCCEEEECCCHHHHHHHH-HHHCCCEEEEECHHEEEECCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 999758888873788536899999999-860998899943111541566--77899789999999999999974498289
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEE--ECCCCCCCHHHHCE
Q ss_conf 32205542400014567776630343416765--04433573025203
Q gi|254780217|r 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILI--SHASPTILSTIRSR 180 (347)
Q Consensus 135 IId~ad~ln~~AaNALLK~LEEPp~~t~fiLi--t~~~~~il~TI~SR 180 (347)
T Consensus 212 lV---GHVTKdG~iAGPkvLEHmV-DtVl~fEGd~~~~~RiLR~~KNR 255 (454)
T PRK11823 212 LV---GHVTKEGAIAGPRVLEHMV-DTVLYFEGDRHSRFRILRAVKNR 255 (454)
T ss_pred EE---EEECCCCCCCCCHHHHHHH-CEEEEECCCCCCCCEEEEEECCC
T ss_conf 99---9772677646614522201-04687515766550245631246