HHsearch alignment for GI: 254780217 and conserved domain: PRK11823

>PRK11823 DNA repair protein RadA; Provisional.
Probab=95.32  E-value=0.044  Score=36.40  Aligned_cols=165  Identities=17%  Similarity=0.174  Sum_probs=80.7

Q ss_pred             CCCCHHHHCCHHHHH------HHHHHHHHCCCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCC------
Q ss_conf             587565610929999------9999999828898-166311798988899999999998177998864312101------
Q gi|254780217|r    7 DPVYNQRLFGHEDIE------KFLSQYYCSGRMH-HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN------   73 (347)
Q Consensus         7 ~p~~~~~i~G~~~~~------~~L~~~~~~~~l~-ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~------   73 (347)
T Consensus        57 ~~~~l~~v~~~-~~~R~~Tgi~ElDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la-~~~~vLYvSGEES~~Qik~  134 (454)
T PRK11823         57 KPVKLSDVEAE-EEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALA-AGGKVLYVSGEESLQQIKL  134 (454)
T ss_pred             CCEEHHHCCCC-CCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCHHHHHHHH
T ss_conf             75652442566-655323785566522158720664899507998889999999999985-5995799815015789999


Q ss_pred             ----------------CCCCCHHHHHHHCCCCCCEEEECCC---CHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf             ----------------2678867999967898754530010---001013421232378875544310222111121035
Q gi|254780217|r   74 ----------------PDPCSPFVKQMASHALHDFLYLSYS---LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI  134 (347)
Q Consensus        74 ----------------~~~~~~~~~~i~~~~hpd~~~i~~~---~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~  134 (347)
T Consensus       135 RA~RLg~~~~~l~l~~et~l~~Il~~i-~~~~P~~lIIDSIQT~~~~~~--~s~pGsvsQVre~a~~L~~~AK~~~i~~~  211 (454)
T PRK11823        135 RAERLGLPSDNLYLLAETNLEDILATI-EEEKPDLVVIDSIQTMYSPEL--ESAPGSVSQVRECAAELTRLAKQSGIAVF  211 (454)
T ss_pred             HHHHHCCCCCCCEEEECCCHHHHHHHH-HHHCCCEEEEECHHEEEECCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             999758888873788536899999999-860998899943111541566--77899789999999999999974498289


Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEE--ECCCCCCCHHHHCE
Q ss_conf             32205542400014567776630343416765--04433573025203
Q gi|254780217|r  135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILI--SHASPTILSTIRSR  180 (347)
Q Consensus       135 IId~ad~ln~~AaNALLK~LEEPp~~t~fiLi--t~~~~~il~TI~SR  180 (347)
T Consensus       212 lV---GHVTKdG~iAGPkvLEHmV-DtVl~fEGd~~~~~RiLR~~KNR  255 (454)
T PRK11823        212 LV---GHVTKEGAIAGPRVLEHMV-DTVLYFEGDRHSRFRILRAVKNR  255 (454)
T ss_pred             EE---EEECCCCCCCCCHHHHHHH-CEEEEECCCCCCCCEEEEEECCC
T ss_conf             99---9772677646614522201-04687515766550245631246