HHsearch alignment for GI: 254780217 and conserved domain: PRK12323
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=100.00 E-value=0 Score=445.00 Aligned_cols=215 Identities=28% Similarity=0.430 Sum_probs=203.0
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC-----CCCCCCCCHHHCCCC
Q ss_conf 966555587565610929999999999982889816631179898889999999999817-----799886431210126
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ-----NPDFSKAPVRMCNPD 75 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc-----~~~~~~~~~~~~~~~ 75 (347)
T Consensus 5 vlark~RP~~F~~~vGQ~~v~~~l~na~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~- 83 (721)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRA- 83 (721)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH-
T ss_conf 6765407986655328599999999999719975447502799888989999999997689986678987887877654-
Q ss_pred CCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 78867999967898754530010001013421232378875544310222111121035322055424000145677766
Q gi|254780217|r 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 (347)
Q Consensus 76 ~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE 155 (347)
T Consensus 84 -----C~~i~~g~~~d~~EiDaas~~---------~v~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~~afnalLKtlE 149 (721)
T PRK12323 84 -----CTEIDAGRFVDYIEMDAASNR---------GVDEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (721)
T ss_pred -----HHHHHCCCCCCEEEEECCCCC---------CHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf -----687756898764774367678---------889999999854558876644699985400058999999998401
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 3034341676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 156 EPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
T Consensus 150 ePP~hv~FilaTT~~~Kip~TilSRc~~f~~~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~RDalslldQ 228 (721)
T PRK12323 150 EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMRDALSLTDQ 228 (721)
T ss_pred CCCCCEEEEEECCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 7975538999438634485889877654234789999999999999998399779999999999758964768889999