HHsearch alignment for GI: 254780217 and conserved domain: PRK12377

>PRK12377 putative replication protein; Provisional.
Probab=96.68  E-value=0.0039  Score=44.92  Aligned_cols=122  Identities=10%  Similarity=0.106  Sum_probs=62.7

Q ss_pred             CCCHHHHC----CHHHHHHH---HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf             87565610----92999999---999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r    8 PVYNQRLF----GHEDIEKF---LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF   80 (347)
Q Consensus         8 p~~~~~i~----G~~~~~~~---L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~   80 (347)
T Consensus        70 ~~~f~ny~~~~~~~~~a~~~a~~~~~~F~~--~~~NlIf~G~pGtGKTHLA~AIg~~a~~~-G~----------------  130 (248)
T PRK12377         70 KCSFANYQVQNDGQRYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK-GR----------------  130 (248)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CC----------------
T ss_conf             386345645787899999999999998731--88608998999987889999999999987-99----------------


Q ss_pred             HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHC-C---CCCCCCCCHHHHHHHHH--HCCHHHHHHHHHHH
Q ss_conf             999967898754530010001013421232378875544310-2---22111121035322055--42400014567776
Q gi|254780217|r   81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL-S---LTANTGYWRVIMIDPVD--GMNRNAANALLKSL  154 (347)
Q Consensus        81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~-~---~~~~~~~~Ki~IId~ad--~ln~~AaNALLK~L  154 (347)
T Consensus       131 ----------sVlF~t~~d-----------Lv~~L~~a~~~g~~~~k~l~~l~~~dLLIIDElG~~~~s~~~~~llfqlI  189 (248)
T PRK12377        131 ----------SVIVVTVPD-----------VMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQII  189 (248)
T ss_pred             ----------EEEEEEHHH-----------HHHHHHHHHHCCCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHH
T ss_conf             ----------699988999-----------99999999984850999999973389898600057889867999999999


Q ss_pred             HHC-CCCCCEEEEECC
Q ss_conf             630-343416765044
Q gi|254780217|r  155 EEP-PQKVLFILISHA  169 (347)
Q Consensus       155 EEP-p~~t~fiLit~~  169 (347)
T Consensus       190 ~~Ry~~~ks~IiTTNL  205 (248)
T PRK12377        190 DRRTASMRSVGMLTNL  205 (248)
T ss_pred             HHHHHCCCCEEEECCC
T ss_conf             9998557986897589