HHsearch alignment for GI: 254780217 and conserved domain: PRK12377
>PRK12377 putative replication protein; Provisional.
Probab=96.68 E-value=0.0039 Score=44.92 Aligned_cols=122 Identities=10% Similarity=0.106 Sum_probs=62.7
Q ss_pred CCCHHHHC----CHHHHHHH---HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 87565610----92999999---999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 8 PVYNQRLF----GHEDIEKF---LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 8 p~~~~~i~----G~~~~~~~---L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
T Consensus 70 ~~~f~ny~~~~~~~~~a~~~a~~~~~~F~~--~~~NlIf~G~pGtGKTHLA~AIg~~a~~~-G~---------------- 130 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK-GR---------------- 130 (248)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CC----------------
T ss_conf 386345645787899999999999998731--88608998999987889999999999987-99----------------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHC-C---CCCCCCCCHHHHHHHHH--HCCHHHHHHHHHHH
Q ss_conf 999967898754530010001013421232378875544310-2---22111121035322055--42400014567776
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL-S---LTANTGYWRVIMIDPVD--GMNRNAANALLKSL 154 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~-~---~~~~~~~~Ki~IId~ad--~ln~~AaNALLK~L 154 (347)
T Consensus 131 ----------sVlF~t~~d-----------Lv~~L~~a~~~g~~~~k~l~~l~~~dLLIIDElG~~~~s~~~~~llfqlI 189 (248)
T PRK12377 131 ----------SVIVVTVPD-----------VMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQII 189 (248)
T ss_pred ----------EEEEEEHHH-----------HHHHHHHHHHCCCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHH
T ss_conf ----------699988999-----------99999999984850999999973389898600057889867999999999
Q ss_pred HHC-CCCCCEEEEECC
Q ss_conf 630-343416765044
Q gi|254780217|r 155 EEP-PQKVLFILISHA 169 (347)
Q Consensus 155 EEP-p~~t~fiLit~~ 169 (347)
T Consensus 190 ~~Ry~~~ks~IiTTNL 205 (248)
T PRK12377 190 DRRTASMRSVGMLTNL 205 (248)
T ss_pred HHHHHCCCCEEEECCC
T ss_conf 9998557986897589