HHsearch alignment for GI: 254780217 and conserved domain: TIGR00368
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=97.83 E-value=1.2e-05 Score=65.23 Aligned_cols=118 Identities=24% Similarity=0.295 Sum_probs=67.6
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCC
Q ss_conf 56561092999999999998288981663117989888999999999981779988643121012678867999967898
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~h 89 (347)
T Consensus 192 DL~dv~GQ~~akRAleIAaAGG---HNlll~GPPGsGKTmla~r~~g-iL--P~L~~~EalE~~~-----v~S~~--~~l 258 (505)
T TIGR00368 192 DLKDVKGQQHAKRALEIAAAGG---HNLLLLGPPGSGKTMLASRLQG-IL--PPLTNEEALETAR-----VLSLV--GKL 258 (505)
T ss_pred CCCCCCCHHHCCHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHC-CC--CCCCCHHHHHHHH-----HHHHH--HHH
T ss_conf 4322545101102677753135---6437678249626899987510-57--8645126666788-----88888--757
Q ss_pred CCEEEE--CCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC-------------CCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 754530--0100010134212323788755443102221111-------------2103532205542400014567776
Q gi|254780217|r 90 HDFLYL--SYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG-------------YWRVIMIDPVDGMNRNAANALLKSL 154 (347)
Q Consensus 90 pd~~~i--~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~-------------~~Ki~IId~ad~ln~~AaNALLK~L 154 (347)
T Consensus 259 ~~~~~~~rQRPF----------------R~PHHsAS~~~lvGGG~~P~PGEiSLAhnGvLFLDEl~EF~r~vL~~LR~Pl 322 (505)
T TIGR00368 259 IDRKQWKRQRPF----------------RSPHHSASKPALVGGGSIPKPGEISLAHNGVLFLDELPEFKRKVLDALREPL 322 (505)
T ss_pred HHCCCHHCCCCC----------------CCCCCCCCCCCCCCCCCCCCCCCEEHHCCCCHHHHCCHHHHHHHHHHHCCCC
T ss_conf 652301106867----------------7865002566640587522285120200541043222044678998717874
Q ss_pred HH
Q ss_conf 63
Q gi|254780217|r 155 EE 156 (347)
Q Consensus 155 EE 156 (347)
T Consensus 323 Ed 324 (505)
T TIGR00368 323 ED 324 (505)
T ss_pred CC
T ss_conf 26