HHsearch alignment for GI: 254780217 and conserved domain: TIGR00390

>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=96.78  E-value=0.0021  Score=47.13  Aligned_cols=71  Identities=17%  Similarity=0.357  Sum_probs=53.8

Q ss_pred             HHHHHHHHHCCHHH-------------HHHHHHHHHHCCCCCCEEE--------E------ECCCCCCCHHHHCEE-EEE
Q ss_conf             35322055424000-------------1456777663034341676--------5------044335730252036-988
Q gi|254780217|r  133 VIMIDPVDGMNRNA-------------ANALLKSLEEPPQKVLFIL--------I------SHASPTILSTIRSRC-LSI  184 (347)
Q Consensus       133 i~IId~ad~ln~~A-------------aNALLK~LEEPp~~t~fiL--------i------t~~~~~il~TI~SRc-~~i  184 (347)
T Consensus       271 iiFIDEIDKIa~~~~e~S~~DvSrEGVQRDlLPiVEGS~V~TKyG~VkTdHiLFIAaGAF~lAKPSDLIPELQGRfPirV  350 (463)
T TIGR00390       271 IIFIDEIDKIAKKGKESSGADVSREGVQRDLLPIVEGSTVNTKYGSVKTDHILFIAAGAFHLAKPSDLIPELQGRFPIRV  350 (463)
T ss_pred             CEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCHHHHHHHHHHCCCCCCCCCCHHHCCCCHHH
T ss_conf             28985303542168886788876556510114202266643100104221578767523202777666631106673778


Q ss_pred             ECCCCCHHHHHHHHHHHCC
Q ss_conf             6479998999999997278
Q gi|254780217|r  185 KFNSLSENNLYKALEQLKI  203 (347)
Q Consensus       185 ~f~~l~~~~~~~~L~~~~~  203 (347)
T Consensus       351 EL~~Lt~~d~~rIL~~p~~  369 (463)
T TIGR00390       351 ELEALTVDDFERILTEPKN  369 (463)
T ss_pred             HHHHHHHHHHHHHHCCCCH
T ss_conf             7676329999996208343