HHsearch alignment for GI: 254780217 and conserved domain: TIGR00390
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=96.78 E-value=0.0021 Score=47.13 Aligned_cols=71 Identities=17% Similarity=0.357 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCHHH-------------HHHHHHHHHHCCCCCCEEE--------E------ECCCCCCCHHHHCEE-EEE
Q ss_conf 35322055424000-------------1456777663034341676--------5------044335730252036-988
Q gi|254780217|r 133 VIMIDPVDGMNRNA-------------ANALLKSLEEPPQKVLFIL--------I------SHASPTILSTIRSRC-LSI 184 (347)
Q Consensus 133 i~IId~ad~ln~~A-------------aNALLK~LEEPp~~t~fiL--------i------t~~~~~il~TI~SRc-~~i 184 (347)
T Consensus 271 iiFIDEIDKIa~~~~e~S~~DvSrEGVQRDlLPiVEGS~V~TKyG~VkTdHiLFIAaGAF~lAKPSDLIPELQGRfPirV 350 (463)
T TIGR00390 271 IIFIDEIDKIAKKGKESSGADVSREGVQRDLLPIVEGSTVNTKYGSVKTDHILFIAAGAFHLAKPSDLIPELQGRFPIRV 350 (463)
T ss_pred CEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCHHHHHHHHHHCCCCCCCCCCHHHCCCCHHH
T ss_conf 28985303542168886788876556510114202266643100104221578767523202777666631106673778
Q ss_pred ECCCCCHHHHHHHHHHHCC
Q ss_conf 6479998999999997278
Q gi|254780217|r 185 KFNSLSENNLYKALEQLKI 203 (347)
Q Consensus 185 ~f~~l~~~~~~~~L~~~~~ 203 (347)
T Consensus 351 EL~~Lt~~d~~rIL~~p~~ 369 (463)
T TIGR00390 351 ELEALTVDDFERILTEPKN 369 (463)
T ss_pred HHHHHHHHHHHHHHCCCCH
T ss_conf 7676329999996208343