HHsearch alignment for GI: 254780217 and conserved domain: TIGR00602
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=98.39 E-value=1.2e-05 Score=65.26 Aligned_cols=212 Identities=17% Similarity=0.188 Sum_probs=122.8
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCE-------EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 55558756561092999999999998288981-------66311798988899999999998177998864312101267
Q gi|254780217|r 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHH-------ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 4 ~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~h-------a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
T Consensus 81 eKykP~~~~~lAvHK~Ki~~v~~wl~a~~Le~~~~rGGs~LLi~GPsGCgKsT~~k~LsKelg~~~~ew~Np~~~~~~~n 160 (670)
T TIGR00602 81 EKYKPETQEELAVHKKKIEEVEEWLKAQVLESAKKRGGSILLITGPSGCGKSTTIKILSKELGIKVQEWLNPVLLKEQKN 160 (670)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 02675424577664777999999975200204566775378841755884478999998886445655407878888851
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHH------HHHCCCC--CCCCCCHHHHHHHHHHCCH----
Q ss_conf 886799996789875453001000101342123237887554------4310222--1111210353220554240----
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI------RYFLSLT--ANTGYWRVIMIDPVDGMNR---- 144 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l------~~~~~~~--~~~~~~Ki~IId~ad~ln~---- 144 (347)
T Consensus 161 ~~k~~~~~~~~f~~~----P--Y~s-------q--~e~f~efll~a~kY~~lQ~lG~~~~~~kk~Il~e~lPhln~F~~d 225 (670)
T TIGR00602 161 DEKDTLSLESKFSRF----P--YLS-------Q--IEVFSEFLLRATKYNKLQKLGDDLQTDKKLILVEDLPHLNKFYRD 225 (670)
T ss_pred HHHHHHHCCCCEEEC----C--CCC-------H--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHCCC
T ss_conf 244442125402216----7--631-------4--554678764212346664214110247545772137640221366
Q ss_pred -H--HHHHHHH-HHHHCCCCC-CEEEEECC-CCCC--------------C--HHH-----HC--EEEEEECCCCCHHHHH
Q ss_conf -0--0145677-766303434-16765044-3357--------------3--025-----20--3698864799989999
Q gi|254780217|r 145 -N--AANALLK-SLEEPPQKV-LFILISHA-SPTI--------------L--STI-----RS--RCLSIKFNSLSENNLY 195 (347)
Q Consensus 145 -~--AaNALLK-~LEEPp~~t-~fiLit~~-~~~i--------------l--~TI-----~S--Rc~~i~f~~l~~~~~~ 195 (347)
T Consensus 226 ~~rr~~~~vlr~~~~~~g~~pPlv~~~te~~~~nlegdNnq~kfGir~~F~~~~IM~~~il~~pr~~~i~FNPiapT~mk 305 (670)
T TIGR00602 226 LDRRALREVLRTKYVSEGRLPPLVIIITESELNNLEGDNNQDKFGIRLLFPAVTIMNKEILEEPRVSNIKFNPIAPTLMK 305 (670)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCHHHHH
T ss_conf 12689999999986237898835899712434445775551010410135257775266540776131001787178999
Q ss_pred HHHHHH----------CCCC-CHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 999972----------7888-9678999999759897899988145
Q gi|254780217|r 196 KALEQL----------KIMG-WDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 196 ~~L~~~----------~~~~-~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
T Consensus 306 K~L~~I~~~e~~~~~~K~~~~~~~~ve~~c~~~~GDiRSAInsLQf 351 (670)
T TIGR00602 306 KFLNRIVTKEAKKKGEKILVPKKTSVEDLCQGESGDIRSAINSLQF 351 (670)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9855562131434678544663468999971068847888888886