HHsearch alignment for GI: 254780217 and conserved domain: TIGR01242

>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=97.58  E-value=0.00022  Score=54.90  Aligned_cols=184  Identities=17%  Similarity=0.151  Sum_probs=112.6

Q ss_pred             CHHHHCCHHHHHHHHHHHHHCC------------CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC
Q ss_conf             5656109299999999999828------------8981663117989888999999999981779988643121012678
Q gi|254780217|r   10 YNQRLFGHEDIEKFLSQYYCSG------------RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC   77 (347)
Q Consensus        10 ~~~~i~G~~~~~~~L~~~~~~~------------~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~   77 (347)
T Consensus       120 ~y~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PPKGvLLyGPPGtGKTLlAKAvA~et~ATF-------Ir------  186 (364)
T TIGR01242       120 SYEDIGGLEKQIREIREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-------IR------  186 (364)
T ss_pred             EEECCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEE-------EE------
T ss_conf             34026787899999988873468883167762889898657007579768899998631455126-------88------


Q ss_pred             CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-----------HHH
Q ss_conf             867999967898754530010001013421232378875544310222111121035322055424-----------000
Q gi|254780217|r   78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-----------RNA  146 (347)
Q Consensus        78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-----------~~A  146 (347)
T Consensus       187 ----------------vVgSElV~K------yIG-EGArLV~~~F~LAk-EKaPsIiFIDEiDAiaakR~~~~TsGdREV  242 (364)
T TIGR01242       187 ----------------VVGSELVRK------YIG-EGARLVREVFELAK-EKAPSIIFIDEIDAIAAKRVDSSTSGDREV  242 (364)
T ss_pred             ----------------EEHHHHHHH------HHC-CHHHHHHHHHHHHH-CCCCCEEEEECHHHHHHHHCCCCCCCCHHH
T ss_conf             ----------------604444444------413-31689999999853-069816861013335432114677873157


Q ss_pred             HHHHHHHHH-----HCCCCCCEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHHHH---CCCCCHHHHHHHHH
Q ss_conf             145677766-----303434167650443357302520--36-98864799989999999972---78889678999999
Q gi|254780217|r  147 ANALLKSLE-----EPPQKVLFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKI  215 (347)
Q Consensus       147 aNALLK~LE-----EPp~~t~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~~~---~~~~~~~~~~~~~~  215 (347)
T Consensus       243 ~RTlmQLLAElDGFd~rg~VkviaATNR~DilDPA~LRPGRFDR~IEVPlP~~~GR~eIlkiHTr~~~la~dVdl~~~A~  322 (364)
T TIGR01242       243 QRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPAILRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAK  322 (364)
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf             88999999752488876761688720762020432148886132573169783220566555210000123568799998


Q ss_pred             HCCCCHHHHHHHHCC
Q ss_conf             759897899988145
Q gi|254780217|r  216 AAYGSVARAIKILHY  230 (347)
Q Consensus       216 ~s~Gs~~~A~~ll~~  230 (347)
T Consensus       323 ~TeG~sGAdlKAi~t  337 (364)
T TIGR01242       323 LTEGASGADLKAICT  337 (364)
T ss_pred             HHCCCCCCHHHHHHH
T ss_conf             747886630423434