HHsearch alignment for GI: 254780217 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=94.03 E-value=0.04 Score=36.72 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=48.8
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHH
Q ss_conf 11798988899999999998177998864312101267886799996789875453001000101342123237887554
Q gi|254780217|r 39 FEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 (347)
Q Consensus 39 f~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l 118 (347)
T Consensus 17 iYGp~G~GKTn~c~~~a~~a~-------------------------~~Gk--~v~YiD----TEGG-----LS~ER~~q~ 60 (223)
T TIGR02237 17 IYGPPGSGKTNICLILAVNAA-------------------------RQGK--KVVYID----TEGG-----LSPERFKQI 60 (223)
T ss_pred EECCCCCCHHHHHHHHHHHHH-------------------------HCCC--CEEEEE----CCCC-----CHHHHHHHH
T ss_conf 875899867899999999998-------------------------6189--589996----2898-----328999998
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHCCHHH--HHHHHHHHHHC
Q ss_conf 4310222111121035322055424000--14567776630
Q gi|254780217|r 119 RYFLSLTANTGYWRVIMIDPVDGMNRNA--ANALLKSLEEP 157 (347)
Q Consensus 119 ~~~~~~~~~~~~~Ki~IId~ad~ln~~A--aNALLK~LEEP 157 (347)
T Consensus 61 ~~~~~~D~e~~~~~-~iv~~~~~f~eQ~~ai~~~~~~~~~~ 100 (223)
T TIGR02237 61 AEDRALDPERVLSN-VIVFEVFDFDEQEVAIQKTSKLIDRD 100 (223)
T ss_pred HHCCCCCHHHHHCC-EEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 63058898888415-35523535678999999999998606