HHsearch alignment for GI: 254780217 and conserved domain: TIGR02237

>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=94.03  E-value=0.04  Score=36.72  Aligned_cols=82  Identities=13%  Similarity=0.214  Sum_probs=48.8

Q ss_pred             ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHH
Q ss_conf             11798988899999999998177998864312101267886799996789875453001000101342123237887554
Q gi|254780217|r   39 FEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI  118 (347)
Q Consensus        39 f~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l  118 (347)
T Consensus        17 iYGp~G~GKTn~c~~~a~~a~-------------------------~~Gk--~v~YiD----TEGG-----LS~ER~~q~   60 (223)
T TIGR02237        17 IYGPPGSGKTNICLILAVNAA-------------------------RQGK--KVVYID----TEGG-----LSPERFKQI   60 (223)
T ss_pred             EECCCCCCHHHHHHHHHHHHH-------------------------HCCC--CEEEEE----CCCC-----CHHHHHHHH
T ss_conf             875899867899999999998-------------------------6189--589996----2898-----328999998


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHCCHHH--HHHHHHHHHHC
Q ss_conf             4310222111121035322055424000--14567776630
Q gi|254780217|r  119 RYFLSLTANTGYWRVIMIDPVDGMNRNA--ANALLKSLEEP  157 (347)
Q Consensus       119 ~~~~~~~~~~~~~Ki~IId~ad~ln~~A--aNALLK~LEEP  157 (347)
T Consensus        61 ~~~~~~D~e~~~~~-~iv~~~~~f~eQ~~ai~~~~~~~~~~  100 (223)
T TIGR02237        61 AEDRALDPERVLSN-VIVFEVFDFDEQEVAIQKTSKLIDRD  100 (223)
T ss_pred             HHCCCCCHHHHHCC-EEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf             63058898888415-35523535678999999999998606