>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..

Probab=98.48 E-value=4e-07 Score=76.99 Aligned_cols=199 Identities=18% Similarity=0.184 Sum_probs=133.4 Q ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHH Q ss_conf 55587565610929999999999982889816631179898889999999999817799886431210126788679999 Q gi|254780217|r 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM 84 (347) Q Consensus 5 ~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i 84 (347) T Consensus 201 ~A~~GkiDPLIGRE~EleRtiQvLCRR~KNN-Pl~VGEPGVGKTAI~EGLA~~I~~~~---kvPe~Lkn~---------- 266 (774) T TIGR02639 201 KAKNGKIDPLIGREDELERTIQVLCRRKKNN-PLLVGEPGVGKTAIVEGLAQRIAEGQ---KVPEVLKNA---------- 266 (774) T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC-CCEECCCCCCHHHHHHHHHHHHHCCC---CCCHHHCCC---------- T ss_conf 9860887873456688742333203456788-72044888644899999999864156---467002478---------- Q ss_pred HCCCCCCEEEECCCCHHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCCH-HHHHHHHHHC---------CHHHHHHHHHH Q ss_conf 67898754530010001013421232378-8755443102221111210-3532205542---------40001456777 Q gi|254780217|r 85 ASHALHDFLYLSYSLNPKTGKWRTVITVD-EIRRIRYFLSLTANTGYWR-VIMIDPVDGM---------NRNAANALLKS 153 (347) Q Consensus 85 ~~~~hpd~~~i~~~~~~k~~~~~~~I~vd-~IR~l~~~~~~~~~~~~~K-i~IId~ad~l---------n~~AaNALLK~ 153 (347) T Consensus 267 ------~IY~LDmG~LLAGTKYRGD--FE~RLK~V~~Ei~~~----~~anILFIDEIHTIVGAGATSGGsmDASNLLKPa 334 (774) T TIGR02639 267 ------KIYSLDMGTLLAGTKYRGD--FEERLKAVVSEIEKE----PNANILFIDEIHTIVGAGATSGGSMDASNLLKPA 334 (774) T ss_pred ------CEEEECHHHHHHHCCCCCH--HHHHHHHHHHHHHCC----CCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHH T ss_conf ------3454043456410245424--789999999998528----9995466411010331787875155244321125 Q ss_pred HHHCCCCCCEEEEECCCC--CCC---HHHHCEEEEEECCCCCHHHHHHHHHHH--------CCCCCHHHHHHHHHHCCCC Q ss_conf 663034341676504433--573---025203698864799989999999972--------7888967899999975989 Q gi|254780217|r 154 LEEPPQKVLFILISHASP--TIL---STIRSRCLSIKFNSLSENNLYKALEQL--------KIMGWDSKRDFVKIAAYGS 220 (347) Q Consensus 154 LEEPp~~t~fiLit~~~~--~il---~TI~SRc~~i~f~~l~~~~~~~~L~~~--------~~~~~~~~~~~~~~~s~Gs 220 (347) T Consensus 335 L~~--G~iRCIGsTTy~EY~~~FeKDrALsRRFQKIDv~EPs~eet~~ILkGLk~~YE~fH~V~Y~~eal~~Av~LS~ry 412 (774) T TIGR02639 335 LAS--GKIRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSARY 412 (774) T ss_pred HHC--CCEEEECCCCHHHHHCHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHH T ss_conf 307--877862265248641110102021654233117957888999999865542013250113869999999998886 Q ss_pred ------HHHHHHHHCCC Q ss_conf ------78999881457 Q gi|254780217|r 221 ------VARAIKILHYD 231 (347) Q Consensus 221 ------~~~A~~ll~~~ 231 (347) T Consensus 413 I~DRfLPDKAIDviDEa 429 (774) T TIGR02639 413 INDRFLPDKAIDVIDEA 429 (774) T ss_pred CCCCCCCCHHHHHHHHH T ss_conf 02578985432288999

HHsearch alignment for GI: 254780217 and conserved domain: TIGR02639