HHsearch alignment for GI: 254780217 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=98.38 E-value=2.7e-06 Score=70.30 Aligned_cols=132 Identities=17% Similarity=0.283 Sum_probs=92.2
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHC--------CCCCEEEEECCCCCCCHHHHHHHHHHHHHC---CCCCCCCCHHHCCCC
Q ss_conf 587565610929999999999982--------889816631179898889999999999817---799886431210126
Q gi|254780217|r 7 DPVYNQRLFGHEDIEKFLSQYYCS--------GRMHHALLFEGEQGIGKATLGFRYAGHVLQ---NPDFSKAPVRMCNPD 75 (347)
Q Consensus 7 ~p~~~~~i~G~~~~~~~L~~~~~~--------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc---~~~~~~~~~~~~~~~ 75 (347)
T Consensus 492 ~~~L~~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDMSEYmEK----- 566 (774)
T TIGR02639 492 EKELKAKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSEYMEK----- 566 (774)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCHHHHHH-----
T ss_conf 476301315158999999999999874247788816888864798962578899999970820010465044689-----
Q ss_pred CCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 78867999967898754530010001013421232378875544310222111121035322055424000145677766
Q gi|254780217|r 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 (347)
Q Consensus 76 ~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE 155 (347)
T Consensus 567 --HTVsRLI--GsPPGYVGf----EqG-G------------LLT~Avr----K~P~cVLLLDEIEKAHpDI~NILLQVMD 621 (774)
T TIGR02639 567 --HTVSRLI--GSPPGYVGF----EQG-G------------LLTDAVR----KHPHCVLLLDEIEKAHPDIYNILLQVMD 621 (774)
T ss_pred --HHHHHHH--CCCCCCCCC----CCC-C------------CCHHHHC----CCCCEEEHHHHHHHHHHHHHHHHHHHHC
T ss_conf --9998741--688885131----677-7------------2122331----2885354234666631336667876633
Q ss_pred HCC-----------CCCCEEEEEC
Q ss_conf 303-----------4341676504
Q gi|254780217|r 156 EPP-----------QKVLFILISH 168 (347)
Q Consensus 156 EPp-----------~~t~fiLit~ 168 (347)
T Consensus 622 ~AtLTDN~GrKaDFRNVILIMTSN 645 (774)
T TIGR02639 622 YATLTDNNGRKADFRNVILIMTSN 645 (774)
T ss_pred CCEEECCCCCEEEECCEEEEECCC
T ss_conf 543405888576311368884037