HHsearch alignment for GI: 254780217 and conserved domain: TIGR02880
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=95.31 E-value=0.029 Score=37.89 Aligned_cols=127 Identities=24% Similarity=0.359 Sum_probs=74.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEE--EECCCCHHHCCCCCCCCCH
Q ss_conf 16631179898889999999999817799886431210126788679999678987545--3001000101342123237
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL--YLSYSLNPKTGKWRTVITV 112 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~--~i~~~~~~k~~~~~~~I~v 112 (347)
T Consensus 60 h-m~ftG~PGtGkttva~~m~~~l~~lGy~r~G---~~~~------------~trddlvGqy~Ght-aPk---------- 112 (284)
T TIGR02880 60 H-MSFTGNPGTGKTTVALRMAQILHRLGYVRKG---HLVS------------VTRDDLVGQYIGHT-APK---------- 112 (284)
T ss_pred E-EEECCCCCCCHHHHHHHHHHHHHHCCCCCCC---CEEE------------EEHHHHHHHHHCCC-CCH----------
T ss_conf 6-7751689872489999999999871540036---2678------------53001311221257-722----------
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC---------HHHHHHHHHHHHHCCCCCCEEEEECCCCCC------CHHH
Q ss_conf 8875544310222111121035322055424---------000145677766303434167650443357------3025
Q gi|254780217|r 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMN---------RNAANALLKSLEEPPQKVLFILISHASPTI------LSTI 177 (347)
Q Consensus 113 d~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln---------~~AaNALLK~LEEPp~~t~fiLit~~~~~i------l~TI 177 (347)
T Consensus 113 --tke~l-----k~a~GG--vlfideayyly~P~nerdyG~eaieillq~men~r~~lvvi~aG-y~~rm~~f~~snPG~ 182 (284)
T TIGR02880 113 --TKEVL-----KRAMGG--VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAG-YKDRMDSFFESNPGL 182 (284)
T ss_pred --HHHHH-----HHHCCC--EEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC-CHHHHHHHHHCCCCH
T ss_conf --68999-----874287--36642203321776410223799999999872365537888717-078888875117862
Q ss_pred HCEE-EEEECCCCCHHHHHHHH
Q ss_conf 2036-98864799989999999
Q gi|254780217|r 178 RSRC-LSIKFNSLSENNLYKAL 198 (347)
Q Consensus 178 ~SRc-~~i~f~~l~~~~~~~~L 198 (347)
T Consensus 183 ~sr~a~h~~fPdy~~~~l~~ia 204 (284)
T TIGR02880 183 SSRVAHHVDFPDYSEEELLAIA 204 (284)
T ss_pred HHHHHHHCCCCCCCHHHHHHHH
T ss_conf 4677643158887767899999