HHsearch alignment for GI: 254780217 and conserved domain: TIGR02880

>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=95.31  E-value=0.029  Score=37.89  Aligned_cols=127  Identities=24%  Similarity=0.359  Sum_probs=74.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEE--EECCCCHHHCCCCCCCCCH
Q ss_conf             16631179898889999999999817799886431210126788679999678987545--3001000101342123237
Q gi|254780217|r   35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL--YLSYSLNPKTGKWRTVITV  112 (347)
Q Consensus        35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~--~i~~~~~~k~~~~~~~I~v  112 (347)
T Consensus        60 h-m~ftG~PGtGkttva~~m~~~l~~lGy~r~G---~~~~------------~trddlvGqy~Ght-aPk----------  112 (284)
T TIGR02880        60 H-MSFTGNPGTGKTTVALRMAQILHRLGYVRKG---HLVS------------VTRDDLVGQYIGHT-APK----------  112 (284)
T ss_pred             E-EEECCCCCCCHHHHHHHHHHHHHHCCCCCCC---CEEE------------EEHHHHHHHHHCCC-CCH----------
T ss_conf             6-7751689872489999999999871540036---2678------------53001311221257-722----------


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC---------HHHHHHHHHHHHHCCCCCCEEEEECCCCCC------CHHH
Q ss_conf             8875544310222111121035322055424---------000145677766303434167650443357------3025
Q gi|254780217|r  113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMN---------RNAANALLKSLEEPPQKVLFILISHASPTI------LSTI  177 (347)
Q Consensus       113 d~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln---------~~AaNALLK~LEEPp~~t~fiLit~~~~~i------l~TI  177 (347)
T Consensus       113 --tke~l-----k~a~GG--vlfideayyly~P~nerdyG~eaieillq~men~r~~lvvi~aG-y~~rm~~f~~snPG~  182 (284)
T TIGR02880       113 --TKEVL-----KRAMGG--VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAG-YKDRMDSFFESNPGL  182 (284)
T ss_pred             --HHHHH-----HHHCCC--EEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC-CHHHHHHHHHCCCCH
T ss_conf             --68999-----874287--36642203321776410223799999999872365537888717-078888875117862


Q ss_pred             HCEE-EEEECCCCCHHHHHHHH
Q ss_conf             2036-98864799989999999
Q gi|254780217|r  178 RSRC-LSIKFNSLSENNLYKAL  198 (347)
Q Consensus       178 ~SRc-~~i~f~~l~~~~~~~~L  198 (347)
T Consensus       183 ~sr~a~h~~fPdy~~~~l~~ia  204 (284)
T TIGR02880       183 SSRVAHHVDFPDYSEEELLAIA  204 (284)
T ss_pred             HHHHHHHCCCCCCCHHHHHHHH
T ss_conf             4677643158887767899999