HHsearch alignment for GI: 254780217 and conserved domain: TIGR03345

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.92  E-value=1.6e-08  Score=88.21  Aligned_cols=194  Identities=14%  Similarity=0.142  Sum_probs=120.9

Q ss_pred             CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC-CHHHCCCCCCCHHHHHHHCCC
Q ss_conf             5656109299999999999828898166311798988899999999998177998864-312101267886799996789
Q gi|254780217|r   10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA-PVRMCNPDPCSPFVKQMASHA   88 (347)
Q Consensus        10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~-~~~~~~~~~~~~~~~~i~~~~   88 (347)
T Consensus       185 klDPvIGRd~EI~r~iqIL~Rr~KNN-PiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sL-----Dlg~LvAGt  258 (852)
T TIGR03345       185 KIDPVLGRDDEIRQMIDILLRRRQNN-PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL-----DLGLLQAGA  258 (852)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEE-----EHHHHHHCC
T ss_conf             99988694999999999998624799-746579998799999999999976999867743856786-----788886403


Q ss_pred             CCCEEEECCCCHHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--------HHHHHHHHHHHHHCCC
Q ss_conf             8754530010001013421232378-875544310222111121035322055424--------0001456777663034
Q gi|254780217|r   89 LHDFLYLSYSLNPKTGKWRTVITVD-EIRRIRYFLSLTANTGYWRVIMIDPVDGMN--------RNAANALLKSLEEPPQ  159 (347)
Q Consensus        89 hpd~~~i~~~~~~k~~~~~~~I~vd-~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln--------~~AaNALLK~LEEPp~  159 (347)
T Consensus       259 ----------------kyRGe--FEeRlk~ii~ei~~~~---~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLar--G  315 (852)
T TIGR03345       259 ----------------SVKGE--FENRLKSVIDEVKASP---QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--G  315 (852)
T ss_pred             ----------------CCCCH--HHHHHHHHHHHHHHCC---CCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHC--C
T ss_conf             ----------------57635--9999999999998489---97699963487752899888862278875178737--8


Q ss_pred             CCCEEEEECCCC--CC---CHHHHCEEEEEECCCCCHHHHHHHHHH--------HCCCCCHHHHHHHHHHCCC------C
Q ss_conf             341676504433--57---302520369886479998999999997--------2788896789999997598------9
Q gi|254780217|r  160 KVLFILISHASP--TI---LSTIRSRCLSIKFNSLSENNLYKALEQ--------LKIMGWDSKRDFVKIAAYG------S  220 (347)
Q Consensus       160 ~t~fiLit~~~~--~i---l~TI~SRc~~i~f~~l~~~~~~~~L~~--------~~~~~~~~~~~~~~~~s~G------s  220 (347)
T Consensus       316 elr~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI~dR~L  395 (852)
T TIGR03345       316 ELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQL  395 (852)
T ss_pred             CCEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCC
T ss_conf             73499835789998886426889962475527999879999999987999855479687089999999998721554558


Q ss_pred             HHHHHHHHCCCH
Q ss_conf             789998814577
Q gi|254780217|r  221 VARAIKILHYDC  232 (347)
Q Consensus       221 ~~~A~~ll~~~~  232 (347)
T Consensus       396 PDKAIDLlDeA~  407 (852)
T TIGR03345       396 PDKAVSLLDTAC  407 (852)
T ss_pred             CHHHHHHHHHHH
T ss_conf             427899999999