HHsearch alignment for GI: 254780217 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.92 E-value=1.6e-08 Score=88.21 Aligned_cols=194 Identities=14% Similarity=0.142 Sum_probs=120.9
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC-CHHHCCCCCCCHHHHHHHCCC
Q ss_conf 5656109299999999999828898166311798988899999999998177998864-312101267886799996789
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA-PVRMCNPDPCSPFVKQMASHA 88 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 88 (347)
T Consensus 185 klDPvIGRd~EI~r~iqIL~Rr~KNN-PiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sL-----Dlg~LvAGt 258 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQNN-PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL-----DLGLLQAGA 258 (852)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEE-----EHHHHHHCC
T ss_conf 99988694999999999998624799-746579998799999999999976999867743856786-----788886403
Q ss_pred CCCEEEECCCCHHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--------HHHHHHHHHHHHHCCC
Q ss_conf 8754530010001013421232378-875544310222111121035322055424--------0001456777663034
Q gi|254780217|r 89 LHDFLYLSYSLNPKTGKWRTVITVD-EIRRIRYFLSLTANTGYWRVIMIDPVDGMN--------RNAANALLKSLEEPPQ 159 (347)
Q Consensus 89 hpd~~~i~~~~~~k~~~~~~~I~vd-~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln--------~~AaNALLK~LEEPp~ 159 (347)
T Consensus 259 ----------------kyRGe--FEeRlk~ii~ei~~~~---~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLar--G 315 (852)
T TIGR03345 259 ----------------SVKGE--FENRLKSVIDEVKASP---QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--G 315 (852)
T ss_pred ----------------CCCCH--HHHHHHHHHHHHHHCC---CCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHC--C
T ss_conf ----------------57635--9999999999998489---97699963487752899888862278875178737--8
Q ss_pred CCCEEEEECCCC--CC---CHHHHCEEEEEECCCCCHHHHHHHHHH--------HCCCCCHHHHHHHHHHCCC------C
Q ss_conf 341676504433--57---302520369886479998999999997--------2788896789999997598------9
Q gi|254780217|r 160 KVLFILISHASP--TI---LSTIRSRCLSIKFNSLSENNLYKALEQ--------LKIMGWDSKRDFVKIAAYG------S 220 (347)
Q Consensus 160 ~t~fiLit~~~~--~i---l~TI~SRc~~i~f~~l~~~~~~~~L~~--------~~~~~~~~~~~~~~~~s~G------s 220 (347)
T Consensus 316 elr~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI~dR~L 395 (852)
T TIGR03345 316 ELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQL 395 (852)
T ss_pred CCEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCC
T ss_conf 73499835789998886426889962475527999879999999987999855479687089999999998721554558
Q ss_pred HHHHHHHHCCCH
Q ss_conf 789998814577
Q gi|254780217|r 221 VARAIKILHYDC 232 (347)
Q Consensus 221 ~~~A~~ll~~~~ 232 (347)
T Consensus 396 PDKAIDLlDeA~ 407 (852)
T TIGR03345 396 PDKAVSLLDTAC 407 (852)
T ss_pred CHHHHHHHHHHH
T ss_conf 427899999999