HHsearch alignment for GI: 254780217 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.71 E-value=8.7e-06 Score=66.26 Aligned_cols=134 Identities=19% Similarity=0.315 Sum_probs=90.3
Q ss_pred HHHCCHHHHHHHHHHHHHCCC--------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCC-CCCCCHHHCCCCCCCHHHH
Q ss_conf 561092999999999998288--------9816631179898889999999999817799-8864312101267886799
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR--------MHHALLFEGEQGIGKATLGFRYAGHVLQNPD-FSKAPVRMCNPDPCSPFVK 82 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~--------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~-~~~~~~~~~~~~~~~~~~~ 82 (347)
T Consensus 565 ~rViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E--~hsvsr 642 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME--KHSVAR 642 (852)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCC--HHHHHH
T ss_conf 897170999999999999997188889997458998678877689999999999855852069843044301--224778
Q ss_pred HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC----
Q ss_conf 9967898754530010001013421232378875544310222111121035322055424000145677766303----
Q gi|254780217|r 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP---- 158 (347)
Q Consensus 83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp---- 158 (347)
T Consensus 643 L--iGaPPGYVGy~----e-gG-----~Lte~vr-------~~----PysVvL~DEIEKAh~~V~~~lLQilD~G~ltD~ 699 (852)
T TIGR03346 643 L--IGAPPGYVGYE----E-GG-----QLTEAVR-------RK----PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG 699 (852)
T ss_pred H--CCCCCCCCCCC----C-CC-----EECHHHH-------HC----CCEEEEECCHHHHCHHHHHHHHHHHCCCEEECC
T ss_conf 5--58999767768----7-87-----4239898-------19----887998530543076899999988236743079
Q ss_pred -------CCCCEEEEECCC
Q ss_conf -------434167650443
Q gi|254780217|r 159 -------QKVLFILISHAS 170 (347)
Q Consensus 159 -------~~t~fiLit~~~ 170 (347)
T Consensus 700 ~Gr~vdF~NtiiimTSN~G 718 (852)
T TIGR03346 700 QGRTVDFRNTVIIMTSNLG 718 (852)
T ss_pred CCCEEEEEEEEEEEECCCC
T ss_conf 9988853556898615406