HHsearch alignment for GI: 254780217 and conserved domain: TIGR03346

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.71  E-value=8.7e-06  Score=66.26  Aligned_cols=134  Identities=19%  Similarity=0.315  Sum_probs=90.3

Q ss_pred             HHHCCHHHHHHHHHHHHHCCC--------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCC-CCCCCHHHCCCCCCCHHHH
Q ss_conf             561092999999999998288--------9816631179898889999999999817799-8864312101267886799
Q gi|254780217|r   12 QRLFGHEDIEKFLSQYYCSGR--------MHHALLFEGEQGIGKATLGFRYAGHVLQNPD-FSKAPVRMCNPDPCSPFVK   82 (347)
Q Consensus        12 ~~i~G~~~~~~~L~~~~~~~~--------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~-~~~~~~~~~~~~~~~~~~~   82 (347)
T Consensus       565 ~rViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E--~hsvsr  642 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME--KHSVAR  642 (852)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCC--HHHHHH
T ss_conf             897170999999999999997188889997458998678877689999999999855852069843044301--224778


Q ss_pred             HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC----
Q ss_conf             9967898754530010001013421232378875544310222111121035322055424000145677766303----
Q gi|254780217|r   83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP----  158 (347)
Q Consensus        83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp----  158 (347)
T Consensus       643 L--iGaPPGYVGy~----e-gG-----~Lte~vr-------~~----PysVvL~DEIEKAh~~V~~~lLQilD~G~ltD~  699 (852)
T TIGR03346       643 L--IGAPPGYVGYE----E-GG-----QLTEAVR-------RK----PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG  699 (852)
T ss_pred             H--CCCCCCCCCCC----C-CC-----EECHHHH-------HC----CCEEEEECCHHHHCHHHHHHHHHHHCCCEEECC
T ss_conf             5--58999767768----7-87-----4239898-------19----887998530543076899999988236743079


Q ss_pred             -------CCCCEEEEECCC
Q ss_conf             -------434167650443
Q gi|254780217|r  159 -------QKVLFILISHAS  170 (347)
Q Consensus       159 -------~~t~fiLit~~~  170 (347)
T Consensus       700 ~Gr~vdF~NtiiimTSN~G  718 (852)
T TIGR03346       700 QGRTVDFRNTVIIMTSNLG  718 (852)
T ss_pred             CCCEEEEEEEEEEEECCCC
T ss_conf             9988853556898615406