HHsearch alignment for GI: 254780217 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.85 E-value=3.4e-07 Score=77.58 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=114.1
Q ss_pred CCHHHHCC--HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHC
Q ss_conf 75656109--2999999999998288981663117989888999999999981779988643121012678867999967
Q gi|254780217|r 9 VYNQRLFG--HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS 86 (347)
Q Consensus 9 ~~~~~i~G--~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (347)
T Consensus 12 ~tfdnFi~~~N~~~~~~l~~~~~~~~-~~~l~i~G~~GsGKTHLl~a~~~~~~~~------------------------- 65 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAGKG-DRFLYLWGESGSGKSHLLQAACAAAEER------------------------- 65 (226)
T ss_pred CCHHCCCCCCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHHCC-------------------------
T ss_conf 76312365867999999998764668-8869998999998899999999998626-------------------------
Q ss_pred CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHCCC-CCCE
Q ss_conf 8987545300100010134212323788755443102221111210353220554240--001456777663034-3416
Q gi|254780217|r 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEPPQ-KVLF 163 (347)
Q Consensus 87 ~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEPp~-~t~f 163 (347)
T Consensus 66 --~~~~~yl~~~~~-----------~~~~~~~l~~l------~~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~i 126 (226)
T TIGR03420 66 --GKSAIYLPLAEL-----------AQADPEVLEGL------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRL 126 (226)
T ss_pred --CCCEEEECHHHH-----------HHHHHHHHHHC------CCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCEE
T ss_conf --995799529998-----------77539999727------44899999663334378378999999999998652828
Q ss_pred EEEECCCCC----CCHHHHCE---EEEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 765044335----73025203---69886479998999999997----27888967899999975989789998814
Q gi|254780217|r 164 ILISHASPT----ILSTIRSR---CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 164 iLit~~~~~----il~TI~SR---c~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
T Consensus 127 lits~~~p~~l~~~l~dL~SRl~~~~~~~I~~pdd~~~~~iL~k~~~~r~i~i~~~vi~yl~~r~~R~~~~l~~~l~ 203 (226)
T TIGR03420 127 LIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred EEECCCCHHHCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 98678882320320177999996885685279999999999999999859988999999999863798999999999