HHsearch alignment for GI: 254780217 and conserved domain: cd00983
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.80 E-value=0.31 Score=29.54 Aligned_cols=130 Identities=19% Similarity=0.161 Sum_probs=62.6
Q ss_pred HHHHHHCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC-CCCHHHHHHHCCCCCCE-EEECCCC
Q ss_conf 9999982889816--631179898889999999999817799886431210126-78867999967898754-5300100
Q gi|254780217|r 24 LSQYYCSGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD-PCSPFVKQMASHALHDF-LYLSYSL 99 (347)
Q Consensus 24 L~~~~~~~~l~ha--~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~-~~~~~~~~i~~~~hpd~-~~i~~~~ 99 (347)
T Consensus 43 lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk-~---gg~~~~iDaE~a~d~~~a-~~lGVD~~~l~~~qp-- 115 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK-L---GGTVAFIDAEHALDPVYA-KKLGVDLDNLLISQP-- 115 (325)
T ss_pred HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-C---CCEEEEEEHHHCCCHHHH-HHCCCCHHHEEEECC--
T ss_conf 999975899668808999889877799999999999873-5---983999962542598999-980998467589666--
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHH------------------HHHHHHHHH-CCCC
Q ss_conf 010134212323788755443102221111210353220554240001------------------456777663-0343
Q gi|254780217|r 100 NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA------------------NALLKSLEE-PPQK 160 (347)
Q Consensus 100 ~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~Aa------------------NALLK~LEE-Pp~~ 160 (347)
T Consensus 116 ----------~~~Eq~l~i~~~li~s---~~~dliViDSvaal~p~~E~e~~~~d~~vg~~ArlmskalRklt~~l~k~~ 182 (325)
T cd00983 116 ----------DTGEQALEIADSLVRS---GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSN 182 (325)
T ss_pred ----------CHHHHHHHHHHHHHCC---CCCCEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf ----------3899999999997515---887679981511236578876011321143899999999999998753378
Q ss_pred CCEEEEECCCCCC
Q ss_conf 4167650443357
Q gi|254780217|r 161 VLFILISHASPTI 173 (347)
Q Consensus 161 t~fiLit~~~~~i 173 (347)
T Consensus 183 ~~lIfiNQ~R~ki 195 (325)
T cd00983 183 TTVIFINQLREKI 195 (325)
T ss_pred CEEEEEEEEHHHC
T ss_conf 0799955432215