HHsearch alignment for GI: 254780217 and conserved domain: cd00983

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.80  E-value=0.31  Score=29.54  Aligned_cols=130  Identities=19%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             HHHHHHCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC-CCCHHHHHHHCCCCCCE-EEECCCC
Q ss_conf             9999982889816--631179898889999999999817799886431210126-78867999967898754-5300100
Q gi|254780217|r   24 LSQYYCSGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD-PCSPFVKQMASHALHDF-LYLSYSL   99 (347)
Q Consensus        24 L~~~~~~~~l~ha--~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~-~~~~~~~~i~~~~hpd~-~~i~~~~   99 (347)
T Consensus        43 lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk-~---gg~~~~iDaE~a~d~~~a-~~lGVD~~~l~~~qp--  115 (325)
T cd00983          43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK-L---GGTVAFIDAEHALDPVYA-KKLGVDLDNLLISQP--  115 (325)
T ss_pred             HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-C---CCEEEEEEHHHCCCHHHH-HHCCCCHHHEEEECC--
T ss_conf             999975899668808999889877799999999999873-5---983999962542598999-980998467589666--


Q ss_pred             HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHH------------------HHHHHHHHH-CCCC
Q ss_conf             010134212323788755443102221111210353220554240001------------------456777663-0343
Q gi|254780217|r  100 NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA------------------NALLKSLEE-PPQK  160 (347)
Q Consensus       100 ~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~Aa------------------NALLK~LEE-Pp~~  160 (347)
T Consensus       116 ----------~~~Eq~l~i~~~li~s---~~~dliViDSvaal~p~~E~e~~~~d~~vg~~ArlmskalRklt~~l~k~~  182 (325)
T cd00983         116 ----------DTGEQALEIADSLVRS---GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSN  182 (325)
T ss_pred             ----------CHHHHHHHHHHHHHCC---CCCCEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             ----------3899999999997515---887679981511236578876011321143899999999999998753378


Q ss_pred             CCEEEEECCCCCC
Q ss_conf             4167650443357
Q gi|254780217|r  161 VLFILISHASPTI  173 (347)
Q Consensus       161 t~fiLit~~~~~i  173 (347)
T Consensus       183 ~~lIfiNQ~R~ki  195 (325)
T cd00983         183 TTVIFINQLREKI  195 (325)
T ss_pred             CEEEEEEEEHHHC
T ss_conf             0799955432215