HHsearch alignment for GI: 254780217 and conserved domain: cd01125

>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

Probab=94.78  E-value=0.17  Score=31.69  Aligned_cols=26  Identities=19%  Similarity=0.180  Sum_probs=22.5

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             31179898889999999999817799
Q gi|254780217|r   38 LFEGEQGIGKATLGFRYAGHVLQNPD   63 (347)
Q Consensus        38 Lf~Gp~GiGK~~~A~~~A~~llc~~~   63 (347)
T Consensus         5 ~l~g~gG~GKS~lal~lAl~vA~G~~   30 (239)
T cd01125           5 ALVAPGGTGKSSLLLVLALAMALGKN   30 (239)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf             99808998889999999999975996