HHsearch alignment for GI: 254780217 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.43 E-value=0.095 Score=33.75 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECC
Q ss_conf 99999999999828898166311798988899999999998177998864312101267886799996789875453001
Q gi|254780217|r 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 (347)
Q Consensus 18 ~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~ 97 (347)
T Consensus 12 ~~~~~~L~~~v~~~~---nIlIsG~tGSGKTTll~al~~~i~~~---~ri----vti--Ed~--~El-~l~~~~~v~l~~ 76 (186)
T cd01130 12 PLQAAYLWLAVEARK---NILISGGTGSGKTTLLNALLAFIPPD---ERI----ITI--EDT--AEL-QLPHPNWVRLVT 76 (186)
T ss_pred HHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHHCCCC---CCE----EEE--CCC--HHH-CCCCCCEEEEEE
T ss_conf 999999999998599---89998999998999999999613345---645----984--153--540-477775688886
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
Q ss_conf 00010134212323788755443102221111210353220554240001456777663034341676504433573025
Q gi|254780217|r 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 (347)
Q Consensus 98 ~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI 177 (347)
T Consensus 77 ~~~~--~~~~~~~~~~~l--i~~aLR~~p-----d~iivGEiR~--~Ea~-~~l~a~~tGh---~g~ltTiHa~s~~~ai 141 (186)
T cd01130 77 RPGN--VEGSGEVTMADL--LRSALRMRP-----DRIIVGEVRG--GEAL-DLLQAMNTGH---PGGMTTIHANSAEEAL 141 (186)
T ss_pred ECCC--CCCCCEECHHHH--HHHHCCCCC-----CEEECCCCCC--HHHH-HHHHHHHCCC---CCCCCCCCCCCHHHHH
T ss_conf 0464--578650349999--887366899-----7373175683--9999-9999997489---8603031589999999
Q ss_pred HCEE-EEEECCCCCHHHHHHHH
Q ss_conf 2036-98864799989999999
Q gi|254780217|r 178 RSRC-LSIKFNSLSENNLYKAL 198 (347)
Q Consensus 178 ~SRc-~~i~f~~l~~~~~~~~L 198 (347)
T Consensus 142 ~-Rl~~l~~~~~~~~~~~~~~i 162 (186)
T cd01130 142 T-RLELLPSNVPLGRPLLREQI 162 (186)
T ss_pred H-HHHHHHHCCCCCHHHHHHHH
T ss_conf 9-99988754799999999999