HHsearch alignment for GI: 254780217 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.71 E-value=0.032 Score=37.52 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=20.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 1663117989888999999999981
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
T Consensus 20 ~ItEi~G~~gsGKT~l~lqla~~~q 44 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 3999999999989999999999985