HHsearch alignment for GI: 254780217 and conserved domain: cd03247

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.71  E-value=0.046  Score=36.30  Aligned_cols=129  Identities=17%  Similarity=0.169  Sum_probs=63.5

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHH
Q ss_conf             66311798988899999999998177998864312101267886799996789875453001000101342123237887
Q gi|254780217|r   36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI  115 (347)
Q Consensus        36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~I  115 (347)
T Consensus        30 ~~aivG~sGsGKSTLl~~l~G~~~p~~G--~i~i~g~~i~~~~~~~~~~i~~v~Q~~~lf~~ti~~n---lg~~LSgGqk  104 (178)
T cd03247          30 KIALLGRSGSGKSTLLQLLTGDLKPQQG--EITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNN---LGRRFSGGER  104 (178)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCCCC--EEEECCEEHHHHHHHHHHHEEEECCCCCCCCCHHHHH---CCCCCCHHHH
T ss_conf             9999999987599999999861766788--6999999889978999972089835563645419986---2888899999


Q ss_pred             HHHHHHCCC-CCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf             554431022-2111121035322055-424000145677766303434167650443357
Q gi|254780217|r  116 RRIRYFLSL-TANTGYWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTI  173 (347)
Q Consensus       116 R~l~~~~~~-~~~~~~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~i  173 (347)
T Consensus       105 qR----v~iAral~~~p~ililDEpts~LD~~t~~~i~~~l~~~~~~~Tvi~itH~~~~l  160 (178)
T cd03247         105 QR----LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI  160 (178)
T ss_pred             HH----HHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf             99----999999964979767228655699899999999999983999999980589899