HHsearch alignment for GI: 254780217 and conserved domain: cd03247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.71 E-value=0.046 Score=36.30 Aligned_cols=129 Identities=17% Similarity=0.169 Sum_probs=63.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHH
Q ss_conf 66311798988899999999998177998864312101267886799996789875453001000101342123237887
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~I 115 (347)
T Consensus 30 ~~aivG~sGsGKSTLl~~l~G~~~p~~G--~i~i~g~~i~~~~~~~~~~i~~v~Q~~~lf~~ti~~n---lg~~LSgGqk 104 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQG--EITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNN---LGRRFSGGER 104 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCC--EEEECCEEHHHHHHHHHHHEEEECCCCCCCCCHHHHH---CCCCCCHHHH
T ss_conf 9999999987599999999861766788--6999999889978999972089835563645419986---2888899999
Q ss_pred HHHHHHCCC-CCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 554431022-2111121035322055-424000145677766303434167650443357
Q gi|254780217|r 116 RRIRYFLSL-TANTGYWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 (347)
Q Consensus 116 R~l~~~~~~-~~~~~~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~i 173 (347)
T Consensus 105 qR----v~iAral~~~p~ililDEpts~LD~~t~~~i~~~l~~~~~~~Tvi~itH~~~~l 160 (178)
T cd03247 105 QR----LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred HH----HHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 99----999999964979767228655699899999999999983999999980589899