>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

Probab=94.70  E-value=0.032  Score=37.51  Aligned_cols=39  Identities=23%  Similarity=0.435  Sum_probs=24.9

Q ss_pred             HHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             35322055-4240001456777663034341676504433
Q gi|254780217|r  133 VIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASP  171 (347)
Q Consensus       133 i~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~  171 (347)
T Consensus       138 iliLDEPTs~LD~~~~~~i~~~l~~l~~~~t~IiITH~~~  177 (197)
T cd03278         138 FCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKG  177 (197)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf             8997178553898999999999999856998999984999