Query gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 347
No_of_seqs 140 out of 4048
Neff 8.6
Searched_HMMs 39220
Date Mon May 23 16:48:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780217.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09112 DNA polymerase III su 100.0 0 0 548.4 32.6 335 2-338 13-350 (352)
2 TIGR02397 dnaX_nterm DNA polym 100.0 0 0 537.6 25.8 252 1-272 3-267 (363)
3 PRK07471 DNA polymerase III su 100.0 0 0 527.2 31.7 334 2-337 7-362 (363)
4 PRK08451 DNA polymerase III su 100.0 0 0 483.3 26.5 319 1-338 3-337 (523)
5 PRK05896 DNA polymerase III su 100.0 0 0 473.8 23.0 215 1-230 5-223 (613)
6 PRK06674 DNA polymerase III su 100.0 0 0 466.1 27.1 215 1-230 5-223 (563)
7 PRK06647 DNA polymerase III su 100.0 0 0 467.1 25.8 215 1-230 5-223 (560)
8 PRK08058 DNA polymerase III su 100.0 0 0 459.6 30.3 308 9-335 2-328 (329)
9 PRK05563 DNA polymerase III su 100.0 0 0 461.6 26.0 215 1-230 5-223 (541)
10 PRK06305 DNA polymerase III su 100.0 0 0 455.0 27.5 215 1-230 6-225 (462)
11 PRK07270 DNA polymerase III su 100.0 0 0 459.1 24.4 215 1-230 4-222 (557)
12 PRK06645 DNA polymerase III su 100.0 0 0 446.1 29.2 216 1-231 10-233 (507)
13 PRK05707 DNA polymerase III su 100.0 0 0 442.6 29.8 301 17-335 8-323 (328)
14 PRK09111 DNA polymerase III su 100.0 0 0 446.7 26.5 215 1-230 12-235 (600)
15 PRK08691 DNA polymerase III su 100.0 0 0 452.0 21.6 251 1-270 5-264 (704)
16 PRK07940 DNA polymerase III su 100.0 0 0 440.4 28.7 210 9-234 2-223 (395)
17 PRK12323 DNA polymerase III su 100.0 0 0 445.0 24.2 215 1-230 5-228 (721)
18 PRK07994 DNA polymerase III su 100.0 0 0 447.4 22.2 215 1-230 5-223 (643)
19 PRK07003 DNA polymerase III su 100.0 0 0 442.1 23.5 250 1-269 5-263 (816)
20 PRK08853 DNA polymerase III su 100.0 0 0 443.4 22.2 249 1-268 5-262 (717)
21 PRK06872 DNA polymerase III su 100.0 0 0 436.3 26.6 249 1-268 5-262 (696)
22 PRK07133 DNA polymerase III su 100.0 0 0 440.9 23.5 211 1-230 7-222 (718)
23 PRK07993 DNA polymerase III su 100.0 0 0 432.6 27.6 305 17-337 7-323 (334)
24 PRK05648 DNA polymerase III su 100.0 0 0 437.1 24.6 215 1-230 5-223 (705)
25 PRK05564 DNA polymerase III su 100.0 0 0 430.5 28.2 296 9-335 1-312 (313)
26 COG2812 DnaX DNA polymerase II 100.0 0 0 436.7 24.2 215 1-230 5-223 (515)
27 PRK07764 DNA polymerase III su 100.0 0 0 439.2 21.9 214 2-230 5-224 (775)
28 PRK08770 DNA polymerase III su 100.0 0 0 432.7 25.2 215 1-230 5-223 (663)
29 PRK06871 DNA polymerase III su 100.0 0 0 425.1 28.6 301 17-334 6-319 (324)
30 PRK06964 DNA polymerase III su 100.0 0 0 420.2 28.7 299 17-336 6-340 (342)
31 TIGR00678 holB DNA polymerase 100.0 0 0 443.2 13.4 198 21-224 1-216 (216)
32 PRK08769 DNA polymerase III su 100.0 0 0 412.1 27.7 301 17-337 9-310 (319)
33 PRK06090 DNA polymerase III su 100.0 0 0 410.2 27.3 301 17-337 8-317 (319)
34 PRK08699 DNA polymerase III su 100.0 0 0 397.6 25.2 299 17-337 6-321 (325)
35 PRK07399 DNA polymerase III su 100.0 0 0 394.6 25.1 207 10-229 2-223 (314)
36 PRK07276 DNA polymerase III su 100.0 9.8E-45 0 379.9 26.8 208 17-244 7-215 (290)
37 PRK12402 replication factor C 100.0 4E-41 1.4E-45 350.8 24.5 218 3-230 6-229 (337)
38 PRK05917 DNA polymerase III su 100.0 7.4E-41 1.4E-45 348.6 21.1 174 17-221 2-175 (290)
39 PRK07132 DNA polymerase III su 100.0 4.3E-39 1.1E-43 334.4 25.1 200 17-245 3-204 (303)
40 PRK00440 rfc replication facto 100.0 2.2E-37 5.6E-42 320.6 25.0 194 2-230 6-205 (318)
41 PRK05818 DNA polymerase III su 100.0 7E-37 1.8E-41 316.6 17.7 183 32-230 6-194 (262)
42 COG0470 HolB ATPase involved i 100.0 3.1E-34 7.9E-39 295.3 23.5 201 12-230 1-202 (325)
43 KOG0989 consensus 100.0 4.5E-34 1.1E-38 294.0 20.2 196 3-232 27-235 (346)
44 PRK13342 recombination factor 100.0 1.1E-28 2.8E-33 250.6 21.3 185 2-230 3-201 (417)
45 PRK06581 DNA polymerase III su 100.0 3.9E-29 1E-33 254.2 13.9 151 21-193 2-152 (263)
46 PRK04195 replication factor C 99.9 7E-26 1.8E-30 228.0 19.3 186 3-229 5-205 (403)
47 KOG0991 consensus 99.9 1.4E-25 3.5E-30 225.7 18.2 239 3-277 18-264 (333)
48 pfam05496 RuvB_N Holliday junc 99.9 2.9E-26 7.4E-31 231.1 12.6 183 2-230 14-224 (234)
49 COG2256 MGS1 ATPase related to 99.9 3.1E-24 7.9E-29 214.8 18.7 183 2-229 14-214 (436)
50 PRK13341 recombination factor 99.9 1.8E-24 4.5E-29 216.8 17.3 183 2-229 18-219 (726)
51 KOG0990 consensus 99.9 6.2E-23 1.6E-27 204.3 15.6 196 2-231 31-236 (360)
52 KOG2035 consensus 99.9 2.5E-22 6.3E-27 199.4 17.4 217 4-230 5-231 (351)
53 PRK04132 replication factor C 99.9 4E-21 1E-25 189.7 18.6 156 120-276 636-795 (863)
54 TIGR02902 spore_lonB ATP-depen 99.8 2E-20 5.2E-25 184.1 11.3 210 2-229 55-306 (532)
55 KOG2028 consensus 99.8 2.7E-19 6.8E-24 175.0 13.4 187 2-230 128-339 (554)
56 TIGR02903 spore_lon_C ATP-depe 99.7 6.8E-18 1.7E-22 163.7 8.5 204 5-231 148-399 (616)
57 PRK00080 ruvB Holliday junctio 99.6 1.2E-14 3E-19 137.7 12.9 181 3-229 16-224 (328)
58 PRK08485 DNA polymerase III su 99.5 6.1E-15 1.6E-19 140.0 5.4 74 108-184 34-107 (204)
59 COG2255 RuvB Holliday junction 99.5 5.3E-13 1.3E-17 124.3 12.8 182 2-229 16-225 (332)
60 TIGR00635 ruvB Holliday juncti 99.5 1.3E-13 3.2E-18 129.4 8.7 175 9-229 1-203 (305)
61 PRK00411 cdc6 cell division co 99.3 8.3E-09 2.1E-13 90.6 23.5 212 1-230 22-257 (394)
62 KOG1969 consensus 99.3 9.8E-10 2.5E-14 98.0 16.9 187 4-229 263-512 (877)
63 PRK03992 proteasome-activating 99.1 2E-08 5E-13 87.5 18.0 180 9-226 129-343 (390)
64 cd00009 AAA The AAA+ (ATPases 99.0 1.7E-09 4.3E-14 96.2 9.0 138 15-186 1-149 (151)
65 pfam03215 Rad17 Rad17 cell cyc 99.0 7.9E-09 2E-13 90.7 12.2 211 3-230 10-257 (490)
66 CHL00176 ftsH cell division pr 99.0 8.7E-09 2.2E-13 90.4 12.2 185 9-230 174-392 (631)
67 CHL00095 clpC Clp protease ATP 99.0 1.1E-08 2.8E-13 89.6 12.0 195 10-232 177-398 (823)
68 pfam06068 TIP49 TIP49 C-termin 99.0 3.2E-08 8.2E-13 85.8 14.4 224 4-229 15-390 (395)
69 CHL00181 cbbX CbbX; Provisiona 99.0 7.8E-09 2E-13 90.8 10.9 155 11-200 21-207 (287)
70 COG1223 Predicted ATPase (AAA+ 99.0 5.2E-09 1.3E-13 92.2 9.8 181 7-224 116-322 (368)
71 PRK11034 clpA ATP-dependent Cl 98.9 2.3E-08 5.8E-13 87.0 11.6 195 9-232 183-406 (758)
72 COG0542 clpA ATP-binding subun 98.9 5.3E-08 1.3E-12 84.1 13.3 136 12-172 491-646 (786)
73 TIGR03346 chaperone_ClpB ATP-d 98.9 3.6E-08 9.3E-13 85.4 12.4 196 10-232 171-393 (852)
74 TIGR03345 VI_ClpV1 type VI sec 98.9 1.6E-08 4.1E-13 88.2 10.4 194 10-232 185-407 (852)
75 TIGR03015 pepcterm_ATPase puta 98.9 1.7E-08 4.4E-13 88.0 10.5 206 5-229 16-240 (269)
76 PRK10865 protein disaggregatio 98.9 5.5E-08 1.4E-12 84.0 12.1 197 9-232 175-398 (857)
77 pfam00004 AAA ATPase family as 98.9 4.3E-09 1.1E-13 92.8 6.3 115 37-188 1-130 (131)
78 PRK10733 hflB ATP-dependent me 98.9 4.5E-08 1.2E-12 84.6 10.8 185 8-229 148-366 (644)
79 TIGR03420 DnaA_homol_Hda DnaA 98.8 3.4E-07 8.7E-12 77.6 15.0 176 9-229 12-203 (226)
80 PRK05574 holA DNA polymerase I 98.8 9.9E-06 2.5E-10 65.8 22.1 169 22-228 5-189 (336)
81 TIGR00763 lon ATP-dependent pr 98.8 1E-08 2.6E-13 89.9 5.0 137 36-201 452-611 (941)
82 PRK10865 protein disaggregatio 98.8 1.2E-05 3.1E-10 65.1 20.7 133 12-169 568-720 (857)
83 CHL00081 chlI Mg-protoporyphyr 98.8 4.1E-07 1E-11 76.9 13.0 192 2-199 4-224 (347)
84 PRK08487 DNA polymerase III su 98.8 8.2E-06 2.1E-10 66.5 19.5 166 21-228 3-178 (328)
85 KOG1970 consensus 98.7 4.5E-07 1.2E-11 76.6 12.7 204 4-230 74-318 (634)
86 TIGR03346 chaperone_ClpB ATP-d 98.7 8.7E-06 2.2E-10 66.3 18.7 134 12-170 565-718 (852)
87 KOG0730 consensus 98.7 2.6E-06 6.7E-11 70.5 16.0 182 6-224 428-640 (693)
88 TIGR02928 TIGR02928 orc1/cdc6 98.7 9.3E-07 2.4E-11 74.1 13.3 213 1-229 7-262 (383)
89 KOG1051 consensus 98.7 2E-07 5E-12 79.5 9.3 137 12-179 562-720 (898)
90 KOG0743 consensus 98.7 2.2E-06 5.6E-11 71.1 14.6 151 6-201 195-382 (457)
91 CHL00195 ycf46 Ycf46; Provisio 98.7 7.1E-07 1.8E-11 75.0 12.0 187 1-224 217-432 (491)
92 COG1474 CDC6 Cdc6-related prot 98.7 7.8E-07 2E-11 74.7 12.1 208 3-230 11-240 (366)
93 COG0714 MoxR-like ATPases [Gen 98.6 5.9E-07 1.5E-11 75.7 10.7 153 12-200 24-200 (329)
94 pfam05673 DUF815 Protein of un 98.6 3.3E-06 8.5E-11 69.6 14.1 133 4-181 20-163 (248)
95 PRK05342 clpX ATP-dependent pr 98.6 1.5E-06 3.8E-11 72.4 11.5 114 12-157 72-215 (411)
96 COG0464 SpoVK ATPases of the A 98.6 2.9E-06 7.5E-11 70.0 12.6 175 8-219 238-445 (494)
97 COG1224 TIP49 DNA helicase TIP 98.6 4.3E-06 1.1E-10 68.7 13.3 216 12-229 39-406 (450)
98 PRK13407 bchI magnesium chelat 98.5 6.2E-07 1.6E-11 75.5 8.2 178 7-189 3-202 (334)
99 PRK05201 hslU ATP-dependent pr 98.5 2.1E-06 5.4E-11 71.2 11.0 70 131-200 249-345 (442)
100 PRK10787 DNA-binding ATP-depen 98.5 4.2E-07 1.1E-11 76.9 7.1 158 12-200 322-504 (784)
101 PRK08903 hypothetical protein; 98.5 5.5E-06 1.4E-10 67.8 12.8 172 10-229 16-201 (227)
102 TIGR03345 VI_ClpV1 type VI sec 98.5 0.00015 3.7E-09 56.4 20.0 134 12-170 566-719 (852)
103 pfam07724 AAA_2 AAA domain (Cd 98.5 2.6E-07 6.5E-12 78.6 5.9 97 35-156 4-101 (168)
104 PRK06893 DNA replication initi 98.5 4.4E-06 1.1E-10 68.6 12.2 177 8-229 12-205 (229)
105 pfam01637 Arch_ATPase Archaeal 98.5 7.5E-06 1.9E-10 66.8 13.0 201 14-225 1-221 (223)
106 TIGR02639 ClpA ATP-dependent C 98.5 4E-07 1E-11 77.0 6.4 199 5-231 201-429 (774)
107 KOG0734 consensus 98.5 7.9E-07 2E-11 74.6 7.6 183 8-230 300-516 (752)
108 PRK11034 clpA ATP-dependent Cl 98.4 1.3E-05 3.4E-10 64.7 13.5 132 12-170 458-608 (758)
109 COG0466 Lon ATP-dependent Lon 98.4 1.5E-06 3.8E-11 72.4 8.7 159 13-200 324-506 (782)
110 PRK05642 DNA replication initi 98.4 1.6E-05 4.2E-10 64.0 13.4 177 9-229 16-210 (234)
111 PRK05629 hypothetical protein; 98.4 0.00017 4.4E-09 55.8 18.6 158 33-228 15-181 (331)
112 CHL00095 clpC Clp protease ATP 98.4 8.4E-06 2.1E-10 66.4 11.9 134 12-170 509-662 (823)
113 PRK08084 DNA replication initi 98.4 1.7E-05 4.3E-10 63.9 13.4 177 8-229 18-211 (235)
114 TIGR00602 rad24 checkpoint pro 98.4 1.2E-05 2.9E-10 65.3 12.1 212 4-230 81-351 (670)
115 PRK07452 DNA polymerase III su 98.4 5E-05 1.3E-09 60.1 15.2 202 33-275 1-223 (326)
116 PTZ00112 origin recognition co 98.4 0.00061 1.6E-08 51.4 23.5 191 12-228 267-489 (650)
117 KOG0742 consensus 98.4 2.9E-06 7.4E-11 70.1 8.8 154 11-201 354-527 (630)
118 TIGR02639 ClpA ATP-dependent C 98.4 2.7E-06 7E-11 70.3 8.6 132 7-168 492-645 (774)
119 PRK08727 hypothetical protein; 98.4 3.2E-05 8.1E-10 61.7 13.9 176 9-229 16-206 (233)
120 pfam00308 Bac_DnaA Bacterial d 98.3 4E-05 1E-09 60.9 13.6 185 10-229 6-210 (219)
121 COG0593 DnaA ATPase involved i 98.3 0.00043 1.1E-08 52.6 18.6 191 3-229 81-288 (408)
122 KOG2004 consensus 98.3 1.6E-05 4.1E-10 64.1 11.2 157 12-198 411-592 (906)
123 KOG0733 consensus 98.3 2.4E-05 6.1E-10 62.7 12.1 182 10-228 188-403 (802)
124 KOG1968 consensus 98.3 6.9E-06 1.8E-10 67.0 9.3 201 3-231 311-535 (871)
125 COG1222 RPT1 ATP-dependent 26S 98.3 1.8E-05 4.6E-10 63.7 11.4 183 9-228 148-364 (406)
126 PRK13765 ATP-dependent proteas 98.3 1.4E-06 3.5E-11 72.7 5.4 49 7-58 26-74 (637)
127 TIGR02881 spore_V_K stage V sp 98.2 1.7E-05 4.3E-10 64.0 10.1 159 9-201 3-190 (261)
128 PRK00149 dnaA chromosomal repl 98.2 0.00046 1.2E-08 52.4 16.9 183 11-229 118-321 (447)
129 pfam06144 DNA_pol3_delta DNA p 98.2 2.8E-05 7.1E-10 62.2 10.0 154 37-227 1-166 (172)
130 KOG1942 consensus 98.2 0.00026 6.6E-09 54.4 14.7 97 132-229 298-412 (456)
131 pfam01078 Mg_chelatase Magnesi 98.2 3.2E-06 8.2E-11 69.7 5.0 124 11-156 2-132 (207)
132 pfam07728 AAA_5 AAA domain (dy 98.1 4.8E-06 1.2E-10 68.3 5.4 90 37-156 2-92 (139)
133 smart00382 AAA ATPases associa 98.1 1.7E-05 4.4E-10 63.9 7.2 131 34-184 2-143 (148)
134 COG2607 Predicted ATPase (AAA+ 98.0 0.00033 8.5E-09 53.5 13.5 131 4-182 52-196 (287)
135 KOG0733 consensus 98.0 7.8E-05 2E-09 58.6 9.6 168 9-218 508-713 (802)
136 COG0542 clpA ATP-binding subun 98.0 0.00028 7.2E-09 54.1 11.9 194 10-232 168-390 (786)
137 TIGR01241 FtsH_fam ATP-depende 98.0 5.6E-06 1.4E-10 67.8 3.0 186 9-232 56-277 (505)
138 KOG0731 consensus 98.0 0.00038 9.7E-09 53.0 12.3 188 7-227 306-524 (774)
139 KOG0744 consensus 97.9 0.00019 4.8E-09 55.5 10.6 142 36-200 179-338 (423)
140 PRK12422 chromosomal replicati 97.9 0.0021 5.3E-08 47.1 16.0 157 35-228 142-314 (455)
141 pfam07726 AAA_3 ATPase family 97.9 1.8E-05 4.7E-10 63.6 5.2 88 36-156 1-88 (131)
142 PRK06620 hypothetical protein; 97.9 0.00016 4E-09 56.1 9.8 158 15-229 20-191 (214)
143 COG0465 HflB ATP-dependent Zn 97.9 0.00043 1.1E-08 52.6 11.7 184 9-229 147-364 (596)
144 pfam00493 MCM MCM2/3/5 family. 97.9 0.00018 4.6E-09 55.6 9.6 137 12-183 24-200 (327)
145 KOG0738 consensus 97.9 0.00023 5.9E-09 54.8 10.2 195 9-227 209-423 (491)
146 COG1221 PspF Transcriptional r 97.9 7.7E-05 2E-09 58.6 7.6 198 6-229 72-303 (403)
147 PRK04841 transcriptional regul 97.9 0.00041 1E-08 52.8 11.3 204 4-222 5-220 (903)
148 PRK06585 holA DNA polymerase I 97.9 0.0053 1.3E-07 43.8 22.8 153 35-226 21-183 (343)
149 TIGR00368 TIGR00368 Mg chelata 97.8 1.2E-05 3E-10 65.2 2.8 118 10-156 192-324 (505)
150 PRK10923 glnG nitrogen regulat 97.8 0.0009 2.3E-08 50.0 12.5 161 9-196 135-320 (469)
151 PRK09087 hypothetical protein; 97.8 0.00067 1.7E-08 51.0 11.6 164 10-229 19-197 (226)
152 pfam00931 NB-ARC NB-ARC domain 97.8 5.4E-05 1.4E-09 59.8 5.5 186 19-226 3-200 (285)
153 TIGR00382 clpX ATP-dependent C 97.8 3E-05 7.7E-10 61.9 4.2 125 34-191 153-315 (452)
154 pfam00158 Sigma54_activat Sigm 97.7 0.00024 6.1E-09 54.7 8.4 116 14-156 1-119 (168)
155 smart00350 MCM minichromosome 97.7 0.0011 2.7E-08 49.4 11.6 136 12-187 203-350 (509)
156 PRK05022 anaerobic nitric oxid 97.7 0.0013 3.3E-08 48.7 11.6 188 11-229 185-413 (510)
157 TIGR02442 Cob-chelat-sub cobal 97.7 9.8E-05 2.5E-09 57.8 5.7 179 11-200 3-217 (688)
158 KOG0740 consensus 97.7 0.00022 5.6E-09 54.9 7.3 175 4-219 145-354 (428)
159 COG1239 ChlI Mg-chelatase subu 97.7 0.00054 1.4E-08 51.8 9.3 183 10-200 15-230 (423)
160 KOG2170 consensus 97.7 0.00043 1.1E-08 52.6 8.6 135 12-175 82-230 (344)
161 COG1219 ClpX ATP-dependent pro 97.6 2.6E-05 6.5E-10 62.5 2.2 49 12-60 61-123 (408)
162 pfam05621 TniB Bacterial TniB 97.6 0.0012 3.2E-08 48.9 10.7 207 12-232 34-266 (302)
163 COG0606 Predicted ATPase with 97.6 8.4E-05 2.2E-09 58.3 4.3 46 10-59 177-222 (490)
164 TIGR01242 26Sp45 26S proteasom 97.6 0.00022 5.7E-09 54.9 6.3 184 10-230 120-337 (364)
165 KOG0737 consensus 97.6 0.0012 3E-08 49.1 9.7 191 10-225 90-300 (386)
166 pfam03266 DUF265 Protein of un 97.5 0.00026 6.7E-09 54.3 5.9 149 37-195 2-164 (168)
167 KOG0732 consensus 97.5 0.0028 7.1E-08 46.1 11.0 189 8-228 261-481 (1080)
168 TIGR01243 CDC48 AAA family ATP 97.5 0.0028 7.1E-08 46.1 10.9 182 9-227 538-752 (980)
169 PRK11608 pspF phage shock prot 97.5 0.00048 1.2E-08 52.2 7.0 132 11-169 5-150 (325)
170 PRK10820 DNA-binding transcrip 97.5 0.00085 2.2E-08 50.2 8.1 127 9-169 201-341 (513)
171 KOG0735 consensus 97.5 0.0016 4.1E-08 48.0 9.6 157 31-220 428-608 (952)
172 KOG0736 consensus 97.5 0.0056 1.4E-07 43.6 12.3 188 10-231 399-609 (953)
173 KOG0741 consensus 97.5 0.00019 4.9E-09 55.4 4.8 132 23-187 233-413 (744)
174 PRK09862 putative ATP-dependen 97.4 0.00023 5.9E-09 54.8 4.6 125 10-156 189-320 (506)
175 PRK07914 hypothetical protein; 97.4 0.0039 9.9E-08 44.9 10.6 104 125-228 59-171 (320)
176 KOG0729 consensus 97.4 0.0016 4.1E-08 48.0 8.6 169 10-226 175-388 (435)
177 COG1466 HolA DNA polymerase II 97.4 0.023 5.8E-07 38.7 18.4 168 23-228 5-183 (334)
178 KOG0735 consensus 97.4 0.0036 9.2E-08 45.2 10.1 182 9-228 664-877 (952)
179 PRK09183 transposase/IS protei 97.3 0.00063 1.6E-08 51.3 6.0 99 34-170 101-205 (258)
180 KOG0728 consensus 97.3 0.00082 2.1E-08 50.4 6.6 156 8-200 142-329 (404)
181 KOG0739 consensus 97.3 0.0027 6.9E-08 46.2 9.2 181 10-228 131-342 (439)
182 KOG2680 consensus 97.3 0.0064 1.6E-07 43.2 11.0 114 114-229 267-403 (454)
183 KOG2227 consensus 97.3 0.0041 1E-07 44.7 9.9 202 12-229 150-373 (529)
184 KOG0736 consensus 97.3 0.0033 8.5E-08 45.5 9.3 53 5-57 665-728 (953)
185 KOG0745 consensus 97.3 0.00031 7.8E-09 53.8 4.0 89 36-156 228-331 (564)
186 pfam05729 NACHT NACHT domain. 97.3 0.0024 6E-08 46.7 8.5 148 36-202 2-162 (165)
187 KOG1808 consensus 97.3 0.00085 2.2E-08 50.2 6.2 154 16-203 424-600 (1856)
188 PRK11331 5-methylcytosine-spec 97.2 0.002 5.2E-08 47.2 7.7 40 21-63 184-223 (459)
189 PRK11388 DNA-binding transcrip 97.2 0.0013 3.3E-08 48.8 6.3 127 10-169 323-466 (639)
190 pfam00448 SRP54 SRP54-type pro 97.2 0.0011 2.8E-08 49.3 5.9 135 34-186 1-142 (196)
191 PRK11361 acetoacetate metaboli 97.1 0.0032 8.1E-08 45.6 7.9 155 10-191 141-318 (457)
192 COG2909 MalT ATP-dependent tra 97.1 0.0028 7.3E-08 46.0 7.5 205 6-222 13-228 (894)
193 KOG0741 consensus 97.1 0.0032 8.2E-08 45.6 7.7 156 10-203 515-687 (744)
194 PRK13695 putative NTPase; Prov 97.1 0.0012 3.1E-08 49.0 5.5 145 33-196 2-164 (174)
195 COG1484 DnaC DNA replication p 97.1 0.003 7.7E-08 45.8 7.5 111 18-169 89-208 (254)
196 KOG0652 consensus 97.0 0.0057 1.5E-07 43.6 8.1 163 10-199 169-352 (424)
197 KOG0730 consensus 97.0 0.015 3.7E-07 40.3 10.0 159 31-225 215-390 (693)
198 PRK10365 transcriptional regul 96.9 0.0065 1.7E-07 43.1 8.0 155 10-191 137-314 (441)
199 KOG0478 consensus 96.9 0.0055 1.4E-07 43.7 7.6 140 13-187 430-609 (804)
200 PRK13531 regulatory ATPase Rav 96.9 0.0075 1.9E-07 42.6 7.9 112 13-156 21-133 (498)
201 PRK06526 transposase; Provisio 96.9 0.0026 6.6E-08 46.3 5.4 118 34-189 98-234 (254)
202 PRK10875 recD exonuclease V su 96.8 0.0016 4E-08 48.1 4.3 127 35-178 163-312 (607)
203 KOG0727 consensus 96.8 0.0033 8.5E-08 45.4 5.9 151 10-194 153-331 (408)
204 TIGR00390 hslU heat shock prot 96.8 0.0021 5.3E-08 47.1 4.4 71 133-203 271-369 (463)
205 KOG0651 consensus 96.8 0.0088 2.2E-07 42.1 7.6 55 7-61 127-193 (388)
206 COG3267 ExeA Type II secretory 96.8 0.02 5.1E-07 39.2 9.4 192 8-223 27-241 (269)
207 PRK11545 gntK gluconate kinase 96.8 0.0081 2.1E-07 42.4 7.3 33 29-61 3-35 (177)
208 KOG1514 consensus 96.7 0.076 1.9E-06 34.5 16.3 187 20-229 408-622 (767)
209 pfam01695 IstB IstB-like ATP b 96.7 0.0045 1.1E-07 44.4 6.0 98 34-169 47-149 (178)
210 TIGR02173 cyt_kin_arch cytidyl 96.7 0.0014 3.6E-08 48.4 3.3 22 37-58 3-24 (173)
211 TIGR02640 gas_vesic_GvpN gas v 96.7 0.002 5E-08 47.3 4.0 115 19-156 9-131 (265)
212 TIGR03263 guanyl_kin guanylate 96.7 0.037 9.4E-07 37.0 10.5 21 37-57 4-24 (180)
213 PRK07952 DNA replication prote 96.7 0.0034 8.6E-08 45.4 5.1 57 2-60 59-122 (242)
214 PRK08181 transposase; Validate 96.7 0.0045 1.1E-07 44.4 5.7 118 35-190 107-243 (269)
215 PRK10789 putative multidrug tr 96.7 0.0067 1.7E-07 43.0 6.5 51 131-186 470-521 (569)
216 PRK12377 putative replication 96.7 0.0039 9.9E-08 44.9 5.2 122 8-169 70-205 (248)
217 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0057 1.4E-07 43.6 6.0 57 4-60 42-104 (361)
218 TIGR01447 recD exodeoxyribonuc 96.6 0.0035 8.9E-08 45.3 4.8 144 16-167 228-391 (753)
219 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.6 0.0033 8.5E-08 45.5 4.6 52 130-186 157-209 (238)
220 PRK00300 gmk guanylate kinase; 96.6 0.031 7.8E-07 37.7 9.6 22 36-57 9-30 (208)
221 PRK08116 hypothetical protein; 96.6 0.0039 1E-07 44.9 4.9 59 2-60 69-134 (262)
222 TIGR02030 BchI-ChlI magnesium 96.6 0.0026 6.7E-08 46.3 4.0 194 11-212 3-231 (340)
223 KOG2543 consensus 96.5 0.055 1.4E-06 35.6 10.4 179 11-203 5-194 (438)
224 smart00487 DEXDc DEAD-like hel 96.5 0.012 3E-07 41.0 7.0 132 35-170 25-170 (201)
225 COG1618 Predicted nucleotide k 96.5 0.0041 1.1E-07 44.7 4.6 147 32-192 3-165 (179)
226 PRK10536 hypothetical protein; 96.5 0.0089 2.3E-07 42.0 6.3 149 2-168 45-211 (262)
227 TIGR01243 CDC48 AAA family ATP 96.5 0.11 2.7E-06 33.3 16.1 156 9-201 203-386 (980)
228 PRK08533 flagellar accessory p 96.5 0.0072 1.8E-07 42.7 5.6 138 34-183 24-179 (230)
229 KOG0726 consensus 96.5 0.017 4.2E-07 39.8 7.4 154 9-198 182-365 (440)
230 PRK11176 lipid transporter ATP 96.4 0.0067 1.7E-07 43.0 5.2 51 131-186 498-549 (581)
231 PRK13768 GTPase; Provisional 96.4 0.023 5.9E-07 38.6 7.7 102 33-165 1-102 (253)
232 COG1241 MCM2 Predicted ATPase 96.4 0.004 1E-07 44.8 3.8 139 11-187 285-466 (682)
233 cd03245 ABCC_bacteriocin_expor 96.4 0.0037 9.5E-08 45.1 3.7 42 130-171 158-200 (220)
234 cd03253 ABCC_ATM1_transporter 96.3 0.0044 1.1E-07 44.5 3.8 52 130-186 155-207 (236)
235 PRK06067 flagellar accessory p 96.3 0.018 4.7E-07 39.5 6.9 37 24-60 21-58 (241)
236 pfam06309 Torsin Torsin. This 96.3 0.016 4.1E-07 39.9 6.5 51 11-61 24-80 (127)
237 KOG1803 consensus 96.3 0.0078 2E-07 42.5 4.8 60 131-200 359-419 (649)
238 PRK10790 putative multidrug tr 96.3 0.01 2.7E-07 41.5 5.4 40 131-170 495-535 (593)
239 COG2204 AtoC Response regulato 96.2 0.02 5E-07 39.3 6.7 134 9-169 138-285 (464)
240 cd03248 ABCC_TAP TAP, the Tran 96.2 0.006 1.5E-07 43.4 4.1 51 130-185 168-219 (226)
241 PRK09361 radB DNA repair and r 96.2 0.015 3.8E-07 40.2 6.1 37 24-60 12-49 (224)
242 cd03251 ABCC_MsbA MsbA is an e 96.2 0.0068 1.7E-07 43.0 4.1 52 130-186 156-208 (234)
243 pfam08298 AAA_PrkA PrkA AAA do 96.2 0.012 3E-07 41.0 5.3 143 9-199 55-205 (358)
244 pfam07693 KAP_NTPase KAP famil 96.1 0.067 1.7E-06 35.0 9.0 41 19-59 3-45 (301)
245 TIGR03375 type_I_sec_LssB type 96.1 0.0093 2.4E-07 41.8 4.3 12 40-51 27-38 (694)
246 cd03254 ABCC_Glucan_exporter_l 96.0 0.0098 2.5E-07 41.7 4.3 52 130-186 157-209 (229)
247 PRK06835 DNA replication prote 96.0 0.018 4.6E-07 39.5 5.5 28 34-61 183-210 (330)
248 COG3899 Predicted ATPase [Gene 96.0 0.085 2.2E-06 34.1 8.9 211 13-228 1-261 (849)
249 COG1220 HslU ATP-dependent pro 96.0 0.012 3E-07 41.0 4.5 70 131-200 251-347 (444)
250 pfam09848 DUF2075 Uncharacteri 95.9 0.0052 1.3E-07 43.9 2.6 111 35-166 2-121 (348)
251 cd01120 RecA-like_NTPases RecA 95.9 0.015 3.9E-07 40.2 4.9 24 37-60 2-25 (165)
252 cd03252 ABCC_Hemolysin The ABC 95.9 0.012 3E-07 41.1 4.3 52 130-186 156-208 (237)
253 COG1643 HrpA HrpA-like helicas 95.9 0.046 1.2E-06 36.3 7.3 140 20-168 54-203 (845)
254 cd01121 Sms Sms (bacterial rad 95.9 0.013 3.4E-07 40.6 4.3 151 23-180 70-248 (372)
255 PRK13657 cyclic beta-1,2-gluca 95.8 0.019 4.9E-07 39.3 5.1 20 37-56 364-383 (585)
256 cd03289 ABCC_CFTR2 The CFTR su 95.8 0.015 3.8E-07 40.2 4.4 52 130-186 156-208 (275)
257 pfam02562 PhoH PhoH-like prote 95.8 0.053 1.4E-06 35.8 7.2 131 16-168 8-154 (205)
258 PRK06921 hypothetical protein; 95.8 0.026 6.5E-07 38.3 5.5 29 32-60 114-142 (265)
259 COG1066 Sms Predicted ATP-depe 95.7 0.036 9.2E-07 37.1 6.2 38 23-60 81-119 (456)
260 cd01123 Rad51_DMC1_radA Rad51_ 95.7 0.049 1.2E-06 36.1 6.8 35 24-58 8-43 (235)
261 COG4088 Predicted nucleotide k 95.7 0.0094 2.4E-07 41.8 3.2 131 37-201 4-138 (261)
262 cd01394 radB RadB. The archaea 95.7 0.02 5.2E-07 39.1 4.9 25 35-59 20-44 (218)
263 PRK10416 cell division protein 95.7 0.021 5.3E-07 39.0 4.9 126 31-172 292-428 (499)
264 PRK13764 ATPase; Provisional 95.7 0.019 5E-07 39.3 4.7 46 10-61 241-286 (605)
265 PRK00771 signal recognition pa 95.7 0.037 9.5E-07 37.0 6.0 131 31-179 94-229 (433)
266 cd03369 ABCC_NFT1 Domain 2 of 95.7 0.043 1.1E-06 36.5 6.3 23 37-59 37-59 (207)
267 PRK04220 2-phosphoglycerate ki 95.6 0.035 9E-07 37.2 5.7 36 24-59 82-117 (306)
268 KOG0477 consensus 95.6 0.033 8.5E-07 37.4 5.5 150 12-198 449-645 (854)
269 COG1373 Predicted ATPase (AAA+ 95.6 0.12 3.1E-06 32.8 8.4 136 19-198 24-163 (398)
270 TIGR00959 ffh signal recogniti 95.6 0.016 4E-07 40.0 3.9 105 31-147 99-207 (439)
271 PRK08939 primosomal protein Dn 95.6 0.03 7.6E-07 37.8 5.2 54 6-59 122-182 (306)
272 PRK09302 circadian clock prote 95.5 0.042 1.1E-06 36.6 5.9 24 34-57 24-47 (501)
273 pfam04851 ResIII Type III rest 95.5 0.22 5.5E-06 30.9 9.4 92 17-167 8-99 (103)
274 cd03115 SRP The signal recogni 95.5 0.0098 2.5E-07 41.7 2.5 24 37-60 3-26 (173)
275 cd03243 ABC_MutS_homologs The 95.5 0.048 1.2E-06 36.1 6.0 132 35-187 30-169 (202)
276 PRK12723 flagellar biosynthesi 95.5 0.0029 7.5E-08 45.9 -0.2 134 34-185 174-313 (388)
277 cd03228 ABCC_MRP_Like The MRP 95.5 0.007 1.8E-07 42.9 1.7 134 36-186 30-166 (171)
278 cd03244 ABCC_MRP_domain2 Domai 95.4 0.034 8.7E-07 37.3 5.1 22 37-58 33-54 (221)
279 cd00046 DEXDc DEAD-like helica 95.4 0.033 8.3E-07 37.5 4.9 127 37-168 3-142 (144)
280 COG2274 SunT ABC-type bacterio 95.4 0.024 6.1E-07 38.6 4.2 52 129-184 626-678 (709)
281 cd00984 DnaB_C DnaB helicase C 95.4 0.031 7.9E-07 37.6 4.8 29 32-60 11-39 (242)
282 PRK10078 ribose 1,5-bisphospho 95.3 0.25 6.3E-06 30.4 9.3 22 34-55 2-23 (184)
283 PRK11823 DNA repair protein Ra 95.3 0.044 1.1E-06 36.4 5.4 165 7-180 57-255 (454)
284 TIGR02880 cbbX_cfxQ CbbX prote 95.3 0.029 7.4E-07 37.9 4.4 127 35-198 60-204 (284)
285 PRK10867 signal recognition pa 95.3 0.048 1.2E-06 36.1 5.5 100 32-146 98-199 (453)
286 pfam00270 DEAD DEAD/DEAH box h 95.2 0.29 7.4E-06 29.8 9.4 37 16-59 3-39 (167)
287 PRK11629 lolD lipoprotein tran 95.2 0.093 2.4E-06 33.8 6.8 21 36-56 37-57 (233)
288 PRK06731 flhF flagellar biosyn 95.2 0.028 7E-07 38.1 4.1 28 32-59 73-100 (270)
289 PRK05703 flhF flagellar biosyn 95.2 0.01 2.6E-07 41.5 1.9 146 18-186 185-347 (412)
290 COG1132 MdlB ABC-type multidru 95.2 0.043 1.1E-06 36.5 5.1 50 131-186 484-535 (567)
291 cd03286 ABC_MSH6_euk MutS6 hom 95.2 0.06 1.5E-06 35.4 5.8 120 34-171 30-154 (218)
292 pfam00910 RNA_helicase RNA hel 95.1 0.018 4.5E-07 39.6 2.9 25 37-61 1-25 (105)
293 TIGR01448 recD_rel helicase, R 95.1 0.12 3.1E-06 32.9 7.2 168 20-231 355-540 (769)
294 KOG4658 consensus 95.1 0.24 6.1E-06 30.5 8.7 191 10-225 155-360 (889)
295 COG3829 RocR Transcriptional r 95.1 0.079 2E-06 34.4 6.2 136 6-168 239-389 (560)
296 pfam03796 DnaB_C DnaB-like hel 95.1 0.04 1E-06 36.7 4.7 27 32-58 17-43 (186)
297 cd03246 ABCC_Protease_Secretio 95.1 0.012 3E-07 41.0 1.9 130 37-186 31-167 (173)
298 pfam00625 Guanylate_kin Guanyl 95.0 0.049 1.2E-06 36.0 4.9 21 37-57 4-24 (182)
299 cd03223 ABCD_peroxisomal_ALDP 95.0 0.024 6E-07 38.6 3.2 41 129-171 108-149 (166)
300 PRK12724 flagellar biosynthesi 95.0 0.0099 2.5E-07 41.6 1.2 130 36-187 225-362 (432)
301 COG0468 RecA RecA/RadA recombi 95.0 0.099 2.5E-06 33.6 6.3 30 31-60 55-86 (279)
302 TIGR00764 lon_rel ATP-dependen 94.9 0.043 1.1E-06 36.5 4.4 52 6-60 13-64 (662)
303 pfam01057 Parvo_NS1 Parvovirus 94.9 0.088 2.2E-06 34.0 6.0 38 23-60 101-139 (271)
304 COG1855 ATPase (PilT family) [ 94.9 0.026 6.5E-07 38.3 3.3 41 17-63 252-292 (604)
305 cd03227 ABC_Class2 ABC-type Cl 94.9 0.071 1.8E-06 34.8 5.4 114 36-171 23-142 (162)
306 cd03231 ABC_CcmA_heme_exporter 94.9 0.061 1.6E-06 35.3 5.1 23 35-57 27-49 (201)
307 cd01122 GP4d_helicase GP4d_hel 94.9 0.036 9.2E-07 37.1 3.9 39 22-60 18-56 (271)
308 PRK13640 cbiO cobalt transport 94.8 0.098 2.5E-06 33.6 6.0 145 37-184 37-217 (283)
309 cd01125 repA Hexameric Replica 94.8 0.17 4.3E-06 31.7 7.1 26 38-63 5-30 (239)
310 pfam03029 ATP_bind_1 Conserved 94.8 0.11 2.7E-06 33.3 6.1 21 39-59 1-21 (234)
311 cd03288 ABCC_SUR2 The SUR doma 94.8 0.04 1E-06 36.7 3.9 52 130-186 174-226 (257)
312 PRK12339 2-phosphoglycerate ki 94.8 0.044 1.1E-06 36.5 4.1 24 35-58 4-27 (197)
313 pfam01591 6PF2K 6-phosphofruct 94.7 0.088 2.2E-06 34.0 5.6 143 36-192 15-159 (223)
314 cd01393 recA_like RecA is a b 94.7 0.032 8.2E-07 37.5 3.3 25 35-59 20-44 (226)
315 cd03247 ABCC_cytochrome_bd The 94.7 0.046 1.2E-06 36.3 4.1 129 36-173 30-160 (178)
316 PRK03839 putative kinase; Prov 94.7 0.03 7.7E-07 37.7 3.1 23 36-58 2-24 (180)
317 cd03278 ABC_SMC_barmotin Barmo 94.7 0.032 8.2E-07 37.5 3.3 39 133-171 138-177 (197)
318 TIGR00416 sms DNA repair prote 94.7 0.051 1.3E-06 35.9 4.3 25 35-59 104-128 (481)
319 PRK11131 ATP-dependent RNA hel 94.7 0.22 5.6E-06 30.8 7.5 34 21-60 79-112 (1295)
320 PRK09435 arginine/ornithine tr 94.7 0.21 5.3E-06 31.0 7.4 42 20-61 35-76 (325)
321 TIGR02788 VirB11 P-type DNA tr 94.7 0.031 7.9E-07 37.6 3.1 139 15-244 142-283 (328)
322 cd03283 ABC_MutS-like MutS-lik 94.6 0.094 2.4E-06 33.8 5.5 118 34-171 25-149 (199)
323 PRK13538 cytochrome c biogenes 94.6 0.1 2.5E-06 33.6 5.5 22 36-57 29-50 (204)
324 PRK04328 hypothetical protein; 94.6 0.038 9.6E-07 37.0 3.4 36 24-59 13-49 (250)
325 PRK05748 replicative DNA helic 94.6 0.029 7.4E-07 37.9 2.8 46 14-59 183-228 (448)
326 cd01129 PulE-GspE PulE/GspE Th 94.5 0.14 3.6E-06 32.3 6.3 55 3-59 51-105 (264)
327 KOG3347 consensus 94.5 0.033 8.3E-07 37.5 3.0 27 31-58 5-31 (176)
328 smart00072 GuKc Guanylate kina 94.5 0.28 7.1E-06 30.0 7.7 21 37-57 5-25 (184)
329 PRK07004 replicative DNA helic 94.5 0.052 1.3E-06 35.8 3.9 24 35-58 214-237 (460)
330 cd03280 ABC_MutS2 MutS2 homolo 94.5 0.099 2.5E-06 33.6 5.3 133 35-186 29-168 (200)
331 PRK06995 flhF flagellar biosyn 94.4 0.0071 1.8E-07 42.8 -0.6 132 36-187 178-314 (404)
332 PRK07263 consensus 94.4 0.052 1.3E-06 35.8 3.8 46 13-58 182-227 (453)
333 cd01130 VirB11-like_ATPase Typ 94.4 0.095 2.4E-06 33.7 5.2 150 18-198 12-162 (186)
334 PRK12338 hypothetical protein; 94.4 0.069 1.8E-06 34.9 4.4 28 32-59 2-29 (320)
335 cd03282 ABC_MSH4_euk MutS4 hom 94.4 0.1 2.6E-06 33.5 5.3 134 34-187 29-169 (204)
336 cd01124 KaiC KaiC is a circadi 94.4 0.028 7.1E-07 38.0 2.3 23 37-59 2-24 (187)
337 PRK13542 consensus 94.3 0.094 2.4E-06 33.8 4.9 23 36-58 46-68 (224)
338 PRK11664 ATP-dependent RNA hel 94.3 0.36 9.1E-06 29.1 7.9 135 19-166 8-155 (812)
339 PRK08506 replicative DNA helic 94.3 0.064 1.6E-06 35.1 4.0 44 16-59 175-218 (473)
340 pfam05707 Zot Zonular occluden 94.2 0.14 3.6E-06 32.4 5.7 58 133-190 73-137 (183)
341 cd03281 ABC_MSH5_euk MutS5 hom 94.2 0.13 3.2E-06 32.8 5.4 121 34-171 29-155 (213)
342 PRK08840 replicative DNA helic 94.2 0.06 1.5E-06 35.3 3.8 27 32-58 215-241 (464)
343 KOG1051 consensus 94.2 0.21 5.2E-06 31.0 6.5 161 11-199 185-360 (898)
344 pfam00488 MutS_V MutS domain V 94.2 0.12 3.1E-06 32.9 5.3 120 34-171 42-166 (234)
345 PRK05595 replicative DNA helic 94.2 0.068 1.7E-06 34.9 4.0 43 16-58 183-225 (444)
346 pfam00437 GSPII_E Type II/IV s 94.2 0.11 2.8E-06 33.2 5.1 48 9-59 113-164 (283)
347 PRK08082 consensus 94.2 0.059 1.5E-06 35.4 3.7 45 14-58 183-227 (453)
348 PRK13539 cytochrome c biogenes 94.1 0.064 1.6E-06 35.1 3.8 53 131-188 145-199 (206)
349 cd03284 ABC_MutS1 MutS1 homolo 94.1 0.12 3E-06 32.9 5.1 119 35-171 31-154 (216)
350 PRK08118 topology modulation p 94.1 0.05 1.3E-06 36.0 3.2 23 37-59 4-26 (167)
351 PRK06321 replicative DNA helic 94.1 0.11 2.7E-06 33.4 4.8 39 21-59 213-251 (472)
352 COG2074 2-phosphoglycerate kin 94.1 0.097 2.5E-06 33.6 4.6 41 18-58 72-113 (299)
353 TIGR02237 recomb_radB DNA repa 94.0 0.04 1E-06 36.7 2.6 82 39-157 17-100 (223)
354 PRK09302 circadian clock prote 94.0 0.046 1.2E-06 36.2 2.9 36 24-59 255-291 (501)
355 COG0563 Adk Adenylate kinase a 94.0 0.046 1.2E-06 36.2 2.9 21 37-57 3-23 (178)
356 KOG2456 consensus 94.0 0.09 2.3E-06 33.9 4.3 150 8-178 160-322 (477)
357 cd01428 ADK Adenylate kinase ( 94.0 0.054 1.4E-06 35.7 3.2 23 37-59 2-24 (194)
358 PRK07261 topology modulation p 94.0 0.055 1.4E-06 35.7 3.1 23 37-59 3-25 (171)
359 cd03287 ABC_MSH3_euk MutS3 hom 94.0 0.18 4.6E-06 31.5 5.8 119 35-171 32-155 (222)
360 pfam03308 ArgK ArgK protein. T 93.9 0.19 4.7E-06 31.4 5.9 44 18-61 13-56 (267)
361 PRK13650 cbiO cobalt transport 93.9 0.11 2.7E-06 33.4 4.6 51 132-184 157-210 (276)
362 PRK10436 hypothetical protein; 93.9 0.21 5.4E-06 31.0 6.1 56 3-60 186-241 (461)
363 PRK12337 2-phosphoglycerate ki 93.9 0.17 4.3E-06 31.7 5.6 35 24-58 252-286 (492)
364 PRK09825 idnK D-gluconate kina 93.9 0.065 1.7E-06 35.0 3.5 28 34-61 3-30 (176)
365 PRK13900 type IV secretion sys 93.9 0.12 3.1E-06 32.9 4.8 41 15-58 144-184 (332)
366 KOG1805 consensus 93.8 0.21 5.3E-06 31.0 5.9 157 18-198 672-855 (1100)
367 PRK03846 adenylylsulfate kinas 93.7 0.06 1.5E-06 35.3 3.0 44 17-60 7-50 (198)
368 KOG0922 consensus 93.7 0.26 6.6E-06 30.3 6.2 151 5-168 34-204 (674)
369 TIGR03600 phage_DnaB phage rep 93.7 0.044 1.1E-06 36.5 2.2 22 36-57 196-217 (421)
370 PRK08006 replicative DNA helic 93.7 0.098 2.5E-06 33.6 4.0 27 32-58 222-248 (471)
371 COG0529 CysC Adenylylsulfate k 93.7 0.09 2.3E-06 33.9 3.8 47 15-61 4-50 (197)
372 COG1203 CRISPR-associated heli 93.7 0.32 8.2E-06 29.5 6.7 159 31-189 210-400 (733)
373 smart00534 MUTSac ATPase domai 93.6 0.053 1.3E-06 35.8 2.6 117 37-171 2-123 (185)
374 COG2874 FlaH Predicted ATPases 93.6 0.07 1.8E-06 34.8 3.2 156 15-184 12-185 (235)
375 pfam06745 KaiC KaiC. This fami 93.6 0.065 1.7E-06 35.1 3.0 24 34-57 19-42 (231)
376 PRK10584 putative ABC transpor 93.6 0.2 5.2E-06 31.1 5.6 21 37-57 39-59 (228)
377 COG2804 PulE Type II secretory 93.6 0.27 6.9E-06 30.1 6.2 52 8-61 234-285 (500)
378 TIGR02533 type_II_gspE general 93.6 0.17 4.2E-06 31.8 5.0 135 18-184 231-391 (495)
379 PRK00279 adk adenylate kinase; 93.5 0.073 1.9E-06 34.7 3.1 123 37-180 3-127 (215)
380 COG0467 RAD55 RecA-superfamily 93.5 0.077 2E-06 34.5 3.2 28 34-61 23-50 (260)
381 PRK02496 adk adenylate kinase; 93.5 0.076 1.9E-06 34.5 3.2 23 37-59 4-26 (185)
382 cd03226 ABC_cobalt_CbiO_domain 93.4 0.18 4.5E-06 31.6 5.0 23 36-58 28-50 (205)
383 TIGR00455 apsK adenylylsulfate 93.4 0.072 1.8E-06 34.7 2.9 33 29-61 14-46 (187)
384 COG2842 Uncharacterized ATPase 93.3 0.59 1.5E-05 27.4 7.5 129 8-166 68-199 (297)
385 PTZ00111 DNA replication licen 93.3 0.11 2.8E-06 33.2 3.8 137 12-186 451-640 (916)
386 COG4988 CydD ABC-type transpor 93.3 0.22 5.6E-06 30.8 5.3 63 107-173 454-518 (559)
387 PTZ00088 adenylate kinase 1; P 93.3 0.084 2.1E-06 34.2 3.2 23 37-59 3-25 (225)
388 cd00267 ABC_ATPase ABC (ATP-bi 93.3 0.13 3.2E-06 32.8 4.0 46 130-175 98-145 (157)
389 cd02021 GntK Gluconate kinase 93.2 0.083 2.1E-06 34.2 3.1 24 37-60 2-25 (150)
390 TIGR01128 holA DNA polymerase 93.2 0.82 2.1E-05 26.2 9.5 157 34-228 2-178 (331)
391 pfam00176 SNF2_N SNF2 family N 93.2 0.82 2.1E-05 26.2 8.4 143 17-168 2-156 (295)
392 PRK05541 adenylylsulfate kinas 93.1 0.11 2.9E-06 33.1 3.6 28 33-60 6-33 (176)
393 PRK05506 bifunctional sulfate 93.1 0.13 3.3E-06 32.6 3.9 49 12-60 421-469 (613)
394 PRK09165 replicative DNA helic 93.1 0.14 3.7E-06 32.3 4.2 25 34-58 205-229 (484)
395 COG0541 Ffh Signal recognition 93.1 0.15 3.7E-06 32.2 4.2 98 31-146 97-198 (451)
396 pfam01583 APS_kinase Adenylyls 93.1 0.12 3E-06 33.0 3.7 27 34-60 2-28 (157)
397 pfam08423 Rad51 Rad51. Rad51 i 93.1 0.085 2.2E-06 34.1 2.9 21 37-57 46-66 (261)
398 cd03114 ArgK-like The function 93.1 0.15 3.8E-06 32.1 4.2 53 39-95 4-65 (148)
399 TIGR01351 adk adenylate kinase 93.0 0.079 2E-06 34.4 2.7 139 37-191 2-154 (232)
400 TIGR02868 CydC ABC transporter 93.0 0.12 3.1E-06 32.9 3.6 130 37-170 390-566 (566)
401 PRK08694 consensus 92.9 0.14 3.6E-06 32.4 3.9 44 16-59 200-243 (468)
402 pfam02367 UPF0079 Uncharacteri 92.9 0.14 3.5E-06 32.5 3.8 38 21-61 5-42 (123)
403 cd03213 ABCG_EPDR ABCG transpo 92.9 0.25 6.3E-06 30.4 5.1 22 36-57 37-58 (194)
404 TIGR01842 type_I_sec_PrtD type 92.9 0.096 2.5E-06 33.7 3.0 146 19-171 344-527 (556)
405 PRK03731 aroL shikimate kinase 92.9 0.11 2.8E-06 33.3 3.3 27 34-60 2-28 (172)
406 COG1674 FtsK DNA segregation A 92.9 0.21 5.2E-06 31.0 4.7 164 30-199 527-715 (858)
407 PRK06851 hypothetical protein; 92.8 0.24 6.1E-06 30.5 5.0 161 31-200 28-237 (368)
408 cd04155 Arl3 Arl3 subfamily. 92.8 0.38 9.6E-06 28.9 6.0 136 23-199 4-141 (173)
409 cd03285 ABC_MSH2_euk MutS2 hom 92.8 0.32 8.2E-06 29.5 5.6 134 34-186 30-170 (222)
410 PRK09270 frcK putative fructos 92.8 0.096 2.4E-06 33.7 2.8 27 35-61 35-61 (230)
411 PRK00131 aroK shikimate kinase 92.8 0.11 2.8E-06 33.2 3.1 24 37-60 7-30 (175)
412 TIGR00750 lao LAO/AO transport 92.7 0.32 8.1E-06 29.5 5.4 41 19-60 23-64 (333)
413 PRK13235 nifH nitrogenase redu 92.7 0.33 8.5E-06 29.3 5.5 30 130-159 143-172 (274)
414 PRK12727 flagellar biosynthesi 92.7 0.056 1.4E-06 35.6 1.5 150 17-186 322-484 (557)
415 PRK07773 replicative DNA helic 92.7 0.16 4.2E-06 31.8 3.9 106 34-145 203-328 (868)
416 TIGR03574 selen_PSTK L-seryl-t 92.6 0.12 3E-06 32.9 3.2 23 37-59 2-24 (249)
417 COG3284 AcoR Transcriptional a 92.6 0.36 9.1E-06 29.1 5.6 114 15-156 316-433 (606)
418 COG1936 Predicted nucleotide k 92.6 0.094 2.4E-06 33.8 2.6 20 37-56 3-22 (180)
419 TIGR02982 heterocyst_DevA ABC 92.5 0.065 1.7E-06 35.1 1.7 46 10-55 6-52 (220)
420 COG1061 SSL2 DNA or RNA helica 92.5 0.21 5.3E-06 31.0 4.3 137 17-170 41-184 (442)
421 TIGR02857 CydD ABC transporter 92.5 0.19 5E-06 31.2 4.1 143 24-172 371-560 (570)
422 smart00242 MYSc Myosin. Large 92.5 0.36 9.1E-06 29.1 5.5 56 5-61 62-119 (677)
423 PRK13833 conjugal transfer pro 92.5 0.42 1.1E-05 28.5 5.8 50 7-59 116-169 (323)
424 TIGR03575 selen_PSTK_euk L-ser 92.5 0.12 3E-06 33.0 3.0 25 38-62 3-27 (340)
425 PRK12726 flagellar biosynthesi 92.5 0.32 8.1E-06 29.5 5.1 42 20-61 182-233 (407)
426 cd03292 ABC_FtsE_transporter F 92.4 0.62 1.6E-05 27.2 6.6 21 37-57 30-50 (214)
427 cd01381 MYSc_type_VII Myosin m 92.4 0.4 1E-05 28.7 5.6 56 5-61 56-113 (671)
428 COG0552 FtsY Signal recognitio 92.4 0.17 4.4E-06 31.6 3.8 31 31-61 136-166 (340)
429 PRK13946 shikimate kinase; Pro 92.4 0.22 5.7E-06 30.8 4.3 34 22-59 12-45 (195)
430 cd03239 ABC_SMC_head The struc 92.4 0.32 8.2E-06 29.5 5.1 43 131-173 117-161 (178)
431 PRK13851 type IV secretion sys 92.3 0.28 7.1E-06 30.0 4.7 38 18-58 149-186 (343)
432 COG1102 Cmk Cytidylate kinase 92.3 0.12 3E-06 33.0 2.7 22 37-58 3-24 (179)
433 PRK06696 uridine kinase; Valid 92.2 0.4 1E-05 28.7 5.4 43 18-60 8-52 (227)
434 cd01384 MYSc_type_XI Myosin mo 92.2 0.46 1.2E-05 28.2 5.7 55 5-60 58-114 (674)
435 pfam00406 ADK Adenylate kinase 92.1 0.29 7.5E-06 29.8 4.6 20 39-58 1-20 (186)
436 COG3598 RepA RecA-family ATPas 92.1 0.58 1.5E-05 27.4 6.1 26 33-58 88-113 (402)
437 PRK11889 flhF flagellar biosyn 92.1 0.17 4.2E-06 31.8 3.3 135 34-186 241-379 (436)
438 cd00124 MYSc Myosin motor doma 92.0 0.42 1.1E-05 28.5 5.4 30 31-60 83-112 (679)
439 PRK00889 adenylylsulfate kinas 92.0 0.2 5.1E-06 31.1 3.7 26 34-59 4-29 (175)
440 cd02032 Bchl_like This family 92.0 0.26 6.7E-06 30.2 4.2 117 37-157 3-166 (267)
441 pfam00063 Myosin_head Myosin h 91.9 0.45 1.1E-05 28.3 5.4 55 5-60 55-111 (679)
442 cd00464 SK Shikimate kinase (S 91.9 0.17 4.3E-06 31.7 3.2 24 37-60 2-25 (154)
443 cd00983 recA RecA is a bacter 91.8 0.31 8E-06 29.5 4.5 130 24-173 43-195 (325)
444 COG5635 Predicted NTPase (NACH 91.8 0.26 6.7E-06 30.2 4.1 138 36-199 224-375 (824)
445 TIGR03522 GldA_ABC_ATP gliding 91.8 0.23 5.7E-06 30.7 3.7 166 11-185 8-206 (301)
446 cd03238 ABC_UvrA The excision 91.7 0.36 9.2E-06 29.1 4.7 39 133-171 110-150 (176)
447 PRK13947 shikimate kinase; Pro 91.7 0.2 5.1E-06 31.1 3.4 24 37-60 4-27 (171)
448 KOG1533 consensus 91.7 0.45 1.2E-05 28.3 5.2 25 34-58 2-26 (290)
449 TIGR01189 ccmA heme ABC export 91.7 0.15 3.8E-06 32.2 2.7 24 34-57 26-49 (204)
450 cd02027 APSK Adenosine 5'-phos 91.6 0.19 4.8E-06 31.3 3.2 23 37-59 2-24 (149)
451 COG0572 Udk Uridine kinase [Nu 91.6 0.095 2.4E-06 33.7 1.7 112 36-150 10-127 (218)
452 cd01387 MYSc_type_XV Myosin mo 91.6 0.51 1.3E-05 27.8 5.4 30 31-60 84-113 (677)
453 cd03274 ABC_SMC4_euk Eukaryoti 91.5 0.58 1.5E-05 27.4 5.6 39 133-171 152-191 (212)
454 PRK06904 replicative DNA helic 91.5 0.15 3.7E-06 32.3 2.5 27 32-58 219-245 (472)
455 COG3854 SpoIIIAA ncharacterize 91.5 0.32 8.2E-06 29.5 4.3 42 13-58 120-161 (308)
456 TIGR00954 3a01203 Peroxysomal 91.5 0.18 4.7E-06 31.4 3.0 44 12-56 529-578 (788)
457 cd01918 HprK_C HprK/P, the bif 91.4 0.22 5.7E-06 30.7 3.4 24 34-57 14-37 (149)
458 PRK05057 aroK shikimate kinase 91.4 0.2 5.1E-06 31.2 3.2 24 37-60 7-30 (172)
459 PRK10646 putative ATPase; Prov 91.4 0.35 8.8E-06 29.2 4.4 36 23-61 20-55 (153)
460 PRK05636 replicative DNA helic 91.4 0.2 5.1E-06 31.1 3.2 25 34-58 267-291 (507)
461 cd02020 CMPK Cytidine monophos 91.3 0.17 4.2E-06 31.8 2.7 23 38-60 3-25 (147)
462 PRK04132 replication factor C 91.3 0.21 5.4E-06 30.9 3.2 145 4-183 17-163 (863)
463 pfam00485 PRK Phosphoribulokin 91.3 0.2 5E-06 31.2 3.0 24 37-60 2-25 (196)
464 COG5019 CDC3 Septin family pro 91.3 1.3 3.2E-05 24.7 7.2 163 14-197 3-183 (373)
465 cd01377 MYSc_type_II Myosin mo 91.2 0.37 9.4E-06 29.0 4.4 31 30-60 87-117 (693)
466 PRK10535 macrolide transporter 91.2 0.96 2.5E-05 25.6 6.5 53 131-185 163-217 (648)
467 pfam00154 RecA recA bacterial 91.2 0.39 9.9E-06 28.8 4.5 131 24-173 40-192 (322)
468 cd03268 ABC_BcrA_bacitracin_re 91.2 0.55 1.4E-05 27.6 5.2 40 15-57 10-49 (208)
469 PRK05480 uridine kinase; Provi 91.1 0.26 6.5E-06 30.3 3.4 27 32-58 4-30 (209)
470 cd04160 Arfrp1 Arfrp1 subfamil 91.0 0.82 2.1E-05 26.2 6.0 127 36-199 1-133 (167)
471 pfam09439 SRPRB Signal recogni 91.0 0.79 2E-05 26.3 5.9 131 35-201 4-140 (181)
472 CHL00072 chlL photochlorophyll 91.0 0.71 1.8E-05 26.7 5.7 54 37-94 3-56 (271)
473 COG0703 AroK Shikimate kinase 91.0 0.2 5E-06 31.2 2.8 24 36-59 4-27 (172)
474 cd02028 UMPK_like Uridine mono 91.0 0.2 5E-06 31.2 2.8 23 37-59 2-24 (179)
475 COG3910 Predicted ATPase [Gene 90.9 1 2.5E-05 25.5 6.3 158 4-171 9-189 (233)
476 cd01385 MYSc_type_IX Myosin mo 90.9 0.42 1.1E-05 28.6 4.4 30 31-60 91-120 (692)
477 COG1419 FlhF Flagellar GTP-bin 90.9 0.15 3.7E-06 32.2 2.1 58 130-187 281-341 (407)
478 cd02023 UMPK Uridine monophosp 90.9 0.23 5.8E-06 30.7 3.0 22 37-58 2-23 (198)
479 COG0802 Predicted ATPase or ki 90.9 0.34 8.6E-06 29.3 3.9 35 23-60 17-51 (149)
480 COG1100 GTPase SAR1 and relate 90.9 0.8 2E-05 26.3 5.8 26 35-60 6-31 (219)
481 cd02038 FleN-like FleN is a me 90.9 0.49 1.3E-05 28.0 4.7 103 38-169 4-106 (139)
482 cd04158 ARD1 ARD1 subfamily. 90.8 0.37 9.4E-06 29.0 4.1 122 37-198 2-125 (169)
483 KOG0480 consensus 90.8 0.57 1.5E-05 27.5 5.0 144 9-186 342-524 (764)
484 COG0305 DnaB Replicative DNA h 90.8 0.64 1.6E-05 27.1 5.3 127 14-186 176-303 (435)
485 PRK11448 hsdR type I restricti 90.8 0.43 1.1E-05 28.4 4.4 121 17-141 421-553 (1126)
486 PRK12608 transcription termina 90.7 0.46 1.2E-05 28.2 4.4 39 37-102 135-173 (379)
487 PRK13949 shikimate kinase; Pro 90.7 0.26 6.6E-06 30.2 3.1 24 37-60 4-27 (169)
488 cd00071 GMPK Guanosine monopho 90.6 0.23 5.8E-06 30.7 2.8 21 37-57 2-22 (137)
489 PRK13948 shikimate kinase; Pro 90.6 0.31 7.9E-06 29.6 3.5 28 32-59 8-35 (182)
490 PHA00729 NTP-binding motif con 90.6 0.3 7.7E-06 29.7 3.4 37 23-60 7-43 (228)
491 cd01379 MYSc_type_III Myosin m 90.5 0.47 1.2E-05 28.2 4.4 31 30-60 82-112 (653)
492 pfam01745 IPT Isopentenyl tran 90.5 0.26 6.6E-06 30.2 3.0 25 36-60 3-27 (232)
493 PRK13894 conjugal transfer ATP 90.5 0.62 1.6E-05 27.2 5.0 47 10-59 124-174 (320)
494 cd01382 MYSc_type_VI Myosin mo 90.5 0.47 1.2E-05 28.2 4.3 32 29-60 86-117 (717)
495 PRK04296 thymidine kinase; Pro 90.4 0.52 1.3E-05 27.8 4.5 97 37-160 5-110 (197)
496 pfam05272 VirE Virulence-assoc 90.4 1.6 4E-05 23.9 11.9 40 20-59 37-77 (198)
497 cd03230 ABC_DR_subfamily_A Thi 90.3 0.42 1.1E-05 28.6 3.9 133 39-185 31-169 (173)
498 cd01378 MYSc_type_I Myosin mot 90.3 0.5 1.3E-05 28.0 4.3 33 26-58 78-110 (674)
499 PRK09354 recA recombinase A; P 90.3 0.33 8.5E-06 29.3 3.4 90 39-146 65-154 (350)
500 PRK06749 replicative DNA helic 90.3 0.33 8.4E-06 29.4 3.4 133 13-148 165-317 (428)
No 1
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=548.37 Aligned_cols=335 Identities=43% Similarity=0.701 Sum_probs=315.6
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 66555587565610929999999999982889816631179898889999999999817799886431210126788679
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~ 81 (347)
|++.++|+.|++|+||+.+++.|.+++++||+||||||+||+|+||+|+|++||++|||++.....+++.+.+|+++++|
T Consensus 13 ~~g~p~Pr~~~~liGq~~~~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~ 92 (352)
T PRK09112 13 IDGVPSPSENNRLFGHEEARAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLW 92 (352)
T ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 89998964464627869999999999984996524653589980899999999999866998666865567888787789
Q ss_pred HHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99967898754530010001013421232378875544310222111121035322055424000145677766303434
Q gi|254780217|r 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 (347)
Q Consensus 82 ~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t 161 (347)
+++.+|+|||++++.+++|++.++.++.|+|||||++.+|++++|.+|+|||+|||+||.||.+|+|||||||||||++|
T Consensus 93 r~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEPp~~~ 172 (352)
T PRK09112 93 RQIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (352)
T ss_pred HHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 99974899995655343220214543357779999999984548866880699981878746999999999853489874
Q ss_pred CEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCC---CCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 1676504433573025203698864799989999999972788---8967899999975989789998814577999999
Q gi|254780217|r 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIM---GWDSKRDFVKIAAYGSVARAIKILHYDCDKIISS 238 (347)
Q Consensus 162 ~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~---~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~ 238 (347)
+|||+|+++++|||||+||||+++|+|++.+++.+.|.+...+ ..++....++..|+||+|+|+.+++.+..++++.
T Consensus 173 ~fiLit~~~~~ll~TI~SRCq~~~f~pL~~~di~~~L~~i~~~~~~~~~~~~~~l~~~a~GS~~~Al~L~~~~gl~i~~~ 252 (352)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSKQGISAGEETEALLQRSEGSVRKALLLLNYGGLEIIDT 252 (352)
T ss_pred EEEEEECCHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHH
T ss_conf 89988699777768999743321488939899999999875126899879999999870899889998744877999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99984032343228999999999831676999999999999999999998654100454899999999999999987622
Q gi|254780217|r 239 YIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMY 318 (347)
Q Consensus 239 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ 318 (347)
+..++.. ...+......+++.+..++....|+.|.+++..++....+.............|++.|+++.+..++...|
T Consensus 253 ~~~ll~~--p~~d~~~~~~la~~~~~~~~~~~~~~~~~~l~~~l~~~ar~~a~~~~~~~a~~~a~~~~~~~~~~~~~~a~ 330 (352)
T PRK09112 253 VDQLLAG--SGFDLPKAHALAGALSGRESEVQFDLFRDHLLDRIANEARRAAESGQLALAERWARFWSELHEEIVEAETY 330 (352)
T ss_pred HHHHHHC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999808--99998999999999847774789999999999999999998501588378999999999999999988987
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 79979999999999972786
Q gi|254780217|r 319 NLDRRQMIFHLLSKARECND 338 (347)
Q Consensus 319 NLd~~~~ll~ll~~l~~~~~ 338 (347)
|||+++++++++.+++++..
T Consensus 331 NLD~~~~il~~~~~i~~a~r 350 (352)
T PRK09112 331 NLDRKQTVISLLERIHRAFR 350 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 77879999999999999861
No 2
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=100.00 E-value=0 Score=537.61 Aligned_cols=252 Identities=27% Similarity=0.448 Sum_probs=221.6
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
+|+|||||++|++|+||+.++++|+|++..||+||||||+||+|+||||.|+.||++|+|. ..+..||+.|.+
T Consensus 3 ~laRKyRP~~F~d~~GQ~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~------ 75 (363)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECES------ 75 (363)
T ss_pred CCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCH------
T ss_conf 6122237886110235179999999999718966234502859976355899999986588-787787777502------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|..+.+|+|+|+++|+.+.+. +|||||+|++.+.++|..|+||||||||||+||.+|.|||||||||||++
T Consensus 76 C~~i~~g~~~DviEiDAASN~---------gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP~h 146 (363)
T TIGR02397 76 CKEINSGSSLDVIEIDAASNN---------GVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 146 (363)
T ss_pred HHHHHCCCCCCEEEECCCCCC---------CHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 277652898666886486568---------78899999873036875544335887323028656899987652279876
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC-----C
Q ss_conf 41676504433573025203698864799989999999----97278889678999999759897899988145-----7
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~-----~ 231 (347)
++|||.|++++|||+||+||||+|.|++++.+++.+.| +++++.++++++.+++..|+||+|+|++++++ +
T Consensus 147 V~FIlATTE~~KiP~TIlSRCQrF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~~~ 226 (363)
T TIGR02397 147 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLDQAISFGN 226 (363)
T ss_pred EEEEEECCCHHHCCCCCEEECEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
T ss_conf 28887348711205540210003126789989999999999987088317789999999628961068899999998268
Q ss_pred H---HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC-CCHHHHHH
Q ss_conf 7---99999999984032343228999999999831-67699999
Q gi|254780217|r 232 C---DKIISSYIDLIHIPRQEYALQKMQQIADELLS-QDQKIAFD 272 (347)
Q Consensus 232 ~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 272 (347)
. .--++...+++.... .....++.+.+.. ++....+.
T Consensus 227 ~~DG~i~~~~v~~~lGl~~----~~~l~~l~~~~~~~~d~~~~l~ 267 (363)
T TIGR02397 227 GSDGKITYEDVNEMLGLVD----EEKLIELLEAILNKRDTEEALK 267 (363)
T ss_pred CCCCCCCHHHHHHHHCCCC----HHHHHHHHHHHHCCCCHHHHHH
T ss_conf 8788657899999835777----8999999999753876889999
No 3
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=527.21 Aligned_cols=334 Identities=34% Similarity=0.484 Sum_probs=298.0
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCC----CCC
Q ss_conf 6655558756561092999999999998288981663117989888999999999981779988643121012----678
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP----DPC 77 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~----~~~ 77 (347)
+++-++|+.|++|+||+.+++.|.+++.+||+||||||+||+|+||+++|++||++++|++.....+|..|.+ ++.
T Consensus 7 ~~~~p~P~~~~~liGqe~~~~~L~~a~~~grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~ 86 (363)
T PRK07471 7 PEADPHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPD 86 (363)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 89995999827316819999999999985997645876799981889999999999857999777776787053125877
Q ss_pred CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 86799996789875453001000101342123237887554431022211112103532205542400014567776630
Q gi|254780217|r 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 (347)
Q Consensus 78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP 157 (347)
+++|+++.+++|||++++.+.+++|+++.+..|+|||||++++|++++|.+|+|||+|||+||+||.+|+||||||||||
T Consensus 87 ~p~~r~i~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEP 166 (363)
T PRK07471 87 HPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 166 (363)
T ss_pred CCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCC
T ss_conf 72899995269998466762001133321244539999999999724852489669998687873889999999972158
Q ss_pred CCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHH-CCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
Q ss_conf 34341676504433573025203698864799989999999972-78889678999999759897899988145779999
Q gi|254780217|r 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQL-KIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKII 236 (347)
Q Consensus 158 p~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~-~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~ 236 (347)
|++|+|||+|+++++|||||+||||.++|+|++++++.++|.+. ....+++.+..++.+|+||+|+|+.+++.+..+++
T Consensus 167 P~~t~fiLit~~~~~llpTI~SRCq~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~la~~a~Gs~~~Al~l~~~~~~~l~ 246 (363)
T PRK07471 167 PARSLLLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIAALAEAGGPALDDAELAALAALAEGSVGRALRLAGGDGLALY 246 (363)
T ss_pred CCCEEEEEEECCHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
T ss_conf 98838998639977777999973524258995999999999984389999899999999758999999987479859999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------HHHHH
Q ss_conf 9999984032343228999999999831676999999999999999999998654100-----------------45489
Q gi|254780217|r 237 SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ-----------------LEEAD 299 (347)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----------------~~~~~ 299 (347)
+.+..++... ...+...+..+++.+.+.+ ...+..+++++..|+....+....... .....
T Consensus 247 ~~~~~ll~~~-~~~d~~~~~~lad~~a~~~-~~~~~~~l~l~~~~l~~~~r~~~~~~~~~~~~~~E~~~~~rl~~~~~~~ 324 (363)
T PRK07471 247 QRTTALLDTL-PRLDRRALHALADAAAGGD-RAAFALFLDLLDRWLARLARAGARNAGLPEAVPGEAALLARLAPDARLR 324 (363)
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHH
T ss_conf 9999999747-6789999999999981687-7999999999999999999875227881001731799998608863089
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999876227997999999999997278
Q gi|254780217|r 300 QIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARECN 337 (347)
Q Consensus 300 ~l~~~~~~i~~~~~~~~~~NLd~~~~ll~ll~~l~~~~ 337 (347)
+|++.|+.+.+..++...+|||+++++++++..++.+.
T Consensus 325 ~~~~~~~~l~~~~~~~~~~NLD~k~~~ld~~~~l~~~a 362 (363)
T PRK07471 325 RWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEAA 362 (363)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998618988999999999999972
No 4
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=483.30 Aligned_cols=319 Identities=22% Similarity=0.329 Sum_probs=242.8
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
+|+|||||++|++|+||+.+++.|.+++.+||+||||||+||+|+||+++|+.||++|+|.......|||.|.+
T Consensus 3 ~LarKYRP~~F~evIGQe~iv~~L~nAi~~~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~s------ 76 (523)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQ------ 76 (523)
T ss_pred HHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 14442089965440494999999999998599671587578998688999999999975999999898887888------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|+.+.+|+|||+++++.. .+.+||+||++++.+.++|..|+|||+|||+||+||.+|+|||||||||||++
T Consensus 77 C~~i~~g~hpDViEiDaa---------sn~gID~IReLie~~~~~P~~gryKV~IIDEah~Lt~~A~NALLKTLEEPP~~ 147 (523)
T PRK08451 77 CQAALEGRHIDIIEMDAA---------SNRGIDDIRNLIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (523)
T ss_pred HHHHHCCCCCCEEEECCC---------CCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999864899985510553---------33689999999997235886797279998260304899999999970389878
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH----
Q ss_conf 41676504433573025203698864799989999999----9727888967899999975989789998814577----
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC---- 232 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~---- 232 (347)
|+|||+|+++++||+||+||||+|+|++++.+++...| .+++.+++++++.+++..|+||+|+|+.++++..
T Consensus 148 vvFILaTTep~KLp~TIlSRCQ~f~Fk~I~~~~I~~~L~~I~~~E~i~~e~~AL~~IA~~a~GslRDalslLdQ~i~~~~ 227 (523)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILNKEGVSYEPEALEILARSGSGSLRDTLTLLDQAIIFCK 227 (523)
T ss_pred CEEEEECCCHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 37999759947684888742031103379999999999999998399879999999999778948689879999998479
Q ss_pred -HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf -99999999984032343228999999999831676999999999-------9999999999986541004548999999
Q gi|254780217|r 233 -DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIE-------FILKEICKSAKAAALSGQLEEADQIAQI 304 (347)
Q Consensus 233 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 304 (347)
.--.....+++.... ...+.++.+.+...+....++.+.+ .+.+.+....+...+..+......++..
T Consensus 228 ~~i~~~~v~~~lG~~d----~~~~~~l~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 303 (523)
T PRK08451 228 NAITESKVADMLGLLD----PSKIEDFFQAILNKDKEKLFELLAELEDYEAEMVLDEMLLFLKEKLLSKDSEFSILIYER 303 (523)
T ss_pred CCCCHHHHHHHHCCCC----HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 9877999999858889----999999999999458999999999985318999999999999999715785437899999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998762279979999999999972786
Q gi|254780217|r 305 YFSLVKRVHAFSMYNLDRRQMIFHLLSKARECND 338 (347)
Q Consensus 305 ~~~i~~~~~~~~~~NLd~~~~ll~ll~~l~~~~~ 338 (347)
+..++......-.++-|..-.+.-.+.+|-++..
T Consensus 304 ~~~il~~~~~~~~~~~~~~~~l~~~~~km~e~~~ 337 (523)
T PRK08451 304 FFRILSSAKSLLKEGADDGFVLLLMLFKMKEALK 337 (523)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9999999999863078861249999999986036
No 5
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=473.77 Aligned_cols=215 Identities=29% Similarity=0.381 Sum_probs=203.1
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
+|.|||||++|++|+||+.+++.|.+++..||+||||||+||+|+||+++|+.||++|+|.......||+.|.+
T Consensus 5 alyrKYRPk~F~eIIGQe~iv~~L~nAI~~~RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~s------ 78 (613)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV------ 78 (613)
T ss_pred CHHHHCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 12450179976552382999999999998499762277558998488999999999966999999998888878------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|+.+..|+|||+++++.+. ..+||+||++++.++++|..|+|||+|||+||+||.+|+|||||||||||++
T Consensus 79 C~~I~~g~h~DviEIdaas---------n~gIDeIReLie~~~~~P~~gkyKV~IIDEah~Ln~~AaNALLKtLEEPP~~ 149 (613)
T PRK05896 79 CESINTNQSVDIVELDAAS---------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKH 149 (613)
T ss_pred HHHHHCCCCCCEEEEECCC---------CCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCCCCC
T ss_conf 9998569999868840655---------5788999999997085875799459998162217999999999853489878
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 41676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
|+|||+|+++++|||||+||||+|.|++++.+++.+.| ++++.+++++++..++..|+||+|+|++++++
T Consensus 150 viFIL~Ttep~KLLpTIlSRCQrf~Fkri~~~~I~~~L~~I~~kE~i~ie~~AL~~Ia~~adGs~RDAlslLdQ 223 (613)
T PRK05896 150 VVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQ 223 (613)
T ss_pred CEEEEEECCHHHCCHHHHHCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 37999828815493766403550017889989999999999997399878999999999768848789889999
No 6
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=466.12 Aligned_cols=215 Identities=30% Similarity=0.425 Sum_probs=204.0
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
+|.|||||++|++|+||+++.+.|.+++.+||+||||||+||+|+||+++|+.||++|+|.......||+.|.+
T Consensus 5 aLyrkyRP~~F~dvvGQ~~v~~~L~nai~~~ri~HAyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~------ 78 (563)
T PRK06674 5 ALYRVFRPQKFEDVVGQEHVTKTLQNALLQEKVSHAYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPS------ 78 (563)
T ss_pred HHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 78876389976552480999999999998499650343128998689999999999857999999887766878------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|+.+.+|+|||+++++.+.+ .+||+||++.+++.++|..|+|||+|||+||+||.+|+|||||||||||++
T Consensus 79 C~~i~~g~~~DviEiDaasn---------~gVd~IR~i~~~v~~~P~~~~yKV~IIDeah~Lt~~A~NALLKtLEEPP~~ 149 (563)
T PRK06674 79 CLGITNGSISDVLEIDAASN---------NGVDEIRDIRDKVKFAPSAVEYKVYIIDEVHMLSIGAFNALLKTLEEPPGH 149 (563)
T ss_pred HHHHHCCCCCCEEEECCCCC---------CCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCC
T ss_conf 99985589987798525555---------787999999998264886787379998545637999999999986388756
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 41676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
++|||+|+++++|||||+||||+|.|++++.+++.+.| .+++.+++++++..+++.|+|++|+|++++++
T Consensus 150 viFILaTtep~ki~~TI~SRCQrf~F~ri~~~~i~~rL~~I~~~E~i~~~~~aL~~Ia~~a~GsmRDAlsiLdQ 223 (563)
T PRK06674 150 VIFILATTEPHKIPPTIISRCQRFDFRRISVNDIVERLSTVVTNEGTQVEDEALQIIARAADGGMRDALSLLDQ 223 (563)
T ss_pred EEEEEECCCHHHCCHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 49999659947584788733103127889999999999999998499987889999999769978899999999
No 7
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=467.12 Aligned_cols=215 Identities=24% Similarity=0.355 Sum_probs=204.3
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
|++|||||+.|++|+||+++++.|.+++..||+||||||+||+|+||+++|++||++|+|.......||+.|.+
T Consensus 5 ~la~KYRP~~F~dvvGQe~vv~~L~nai~~~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~s------ 78 (560)
T PRK06647 5 GTATKRRPRDFNSLEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFS------ 78 (560)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 77764289865440394999999999997499774366328998789999999999965999999888878878------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|+.+.+|+|||+++++.. .+++||+||++++++.++|..|+|||+|||+||+||.+|+|||||||||||++
T Consensus 79 C~~i~~g~~~DviEidaa---------sn~~VddIR~l~e~v~~~P~~~~yKV~IIDEahmLt~~A~NALLKtLEEPP~~ 149 (560)
T PRK06647 79 CKSIDNDSSLDVIEIDGA---------SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPY 149 (560)
T ss_pred HHHHHCCCCCCEEEECCC---------CCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCC
T ss_conf 888745999875764364---------54888999999998632876687069996465655999999999986348875
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 41676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
|+|||+|+++++|||||+||||+|+|++++.+++...| .+++..++++++.+++..|+||+|+|+.++++
T Consensus 150 ~~FILaTte~~KI~~TI~SRCQ~f~Fk~i~~~~I~~~L~~I~~~E~i~~e~~AL~lIa~~a~Gs~RDalslldq 223 (560)
T PRK06647 150 IVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYEMLKKVCLEDDIKYEDEALKWIAYKSGGSVRDAYTLFDQ 223 (560)
T ss_pred EEEEEECCCHHHCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 59999779947684899965104105559999999999999986798879999999999778958889999999
No 8
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=459.55 Aligned_cols=308 Identities=22% Similarity=0.252 Sum_probs=231.9
Q ss_pred CCHHHHCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCC
Q ss_conf 75656109-29999999999982889816631179898889999999999817799886431210126788679999678
Q gi|254780217|r 9 VYNQRLFG-HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 (347)
Q Consensus 9 ~~~~~i~G-~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (347)
+.|++++| |+.+++.|++++.+||+||||||+||+|+||+++|++||++|+|....+..|||.|.+ |+++.+|
T Consensus 2 ~~~~~~~~~Q~~i~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~------C~~~~~~ 75 (329)
T PRK08058 2 MTWEQLTALQPIVVKMLQNSIAKNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTN------CKRIESG 75 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------HHHHHCC
T ss_conf 9778888318999999999998599661565578999889999999999973999999998878889------9998769
Q ss_pred CCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 98754530010001013421232378875544310222111121035322055424000145677766303434167650
Q gi|254780217|r 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 (347)
Q Consensus 88 ~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit 167 (347)
+|||++++.+ .+++|+|||||++.++++++|.+|+|||+|||+||+||.+|||||||||||||++|+|||+|
T Consensus 76 ~HPD~~~i~p--------~~~~i~idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp~~t~fIL~t 147 (329)
T PRK08058 76 NHPDVHLVAP--------DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGDTTAILLT 147 (329)
T ss_pred CCCCEEEECC--------CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 9997677456--------61407799999999996438757886799973477629999999999864689786799872
Q ss_pred CCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHH-HHHHHHHHHHCCC
Q ss_conf 443357302520369886479998999999997278889678999999759897899988145779-9999999984032
Q gi|254780217|r 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD-KIISSYIDLIHIP 246 (347)
Q Consensus 168 ~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~-~~~~~~~~~l~~~ 246 (347)
+++++|||||+||||.++|+|++.+++.++|.+.+. +++....++.++ |++++|+.+.+++.. ..+..+.+++...
T Consensus 148 ~~~~~lLpTI~SRCq~i~f~~~~~~~i~~~L~~~~i--~~~~a~l~a~~~-gs~~~A~~l~~~~~~~~~~~~~~~~~~~~ 224 (329)
T PRK08058 148 ENKHQILPTILSRCQVVEFRPLPPESLIQRLQEEGI--SESLATLLAQLT-NSVEEALALSEDDWFAQARALVIKLYEAL 224 (329)
T ss_pred CCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHCCC--CHHHHHHHHHHC-CCHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 996664368863142565889999999999998799--989999999878-99999998842615899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CH---H---------HHHHHHHHHHHHH
Q ss_conf 343228999999999831-67699999999999999999999865410----04---5---------4899999999999
Q gi|254780217|r 247 RQEYALQKMQQIADELLS-QDQKIAFDFLIEFILKEICKSAKAAALSG----QL---E---------EADQIAQIYFSLV 309 (347)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~---~---------~~~~l~~~~~~i~ 309 (347)
.. ........+.+.+.. ...+.....+++++..|+........... .. . ....+...++.+.
T Consensus 225 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~rD~l~~~~~~~~~~~~~d~~~~l~~~a~~~~~~~l~~~~~~i~ 303 (329)
T PRK08058 225 HK-GDLLSFVFVQTKWMPLFKEKDQQQLGLDLLLLIYRDLLYVQLGEEDRLVFREQKEELQQLALSYSQQQIVAALELIL 303 (329)
T ss_pred HC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 76-88999999999999870188999999999999999999874175200117999999999985399999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99998762279979999999999972
Q gi|254780217|r 310 KRVHAFSMYNLDRRQMIFHLLSKARE 335 (347)
Q Consensus 310 ~~~~~~~~~NLd~~~~ll~ll~~l~~ 335 (347)
+..+.. ..|.|++.++..++.++++
T Consensus 304 e~~~~l-~~N~N~~L~lE~lll~L~e 328 (329)
T PRK08058 304 EAKRRL-NSNVNFQLVMEQLVLRLQE 328 (329)
T ss_pred HHHHHH-HHCCCHHHHHHHHHHHHHC
T ss_conf 999999-8558999999999996428
No 9
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=461.63 Aligned_cols=215 Identities=28% Similarity=0.438 Sum_probs=204.8
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
+|+|||||++|++|+||+++++.|++++..||+||||||+||+|+||||+|+.||++|+|.......||+.|.+
T Consensus 5 aLyrkyRP~~f~dvvgQ~~v~~~L~n~i~~~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~------ 78 (541)
T PRK05563 5 ALYREWRPRTFEDVVGQEHITTTLKNQIINNRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEI------ 78 (541)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 78876489977662484999999999998499320453038799589999999999957999888985751488------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|+.+.+|+|+|+++++.+.+ -+||+||++++.+.++|..|+|||+|||++|+|+.+|+|||||||||||++
T Consensus 79 C~~i~~g~~~Dv~Eidaas~---------~gvd~iR~~~~~~~~~p~~~~~Kv~IiDEvhmls~~a~nallKtlEePp~~ 149 (541)
T PRK05563 79 CKKINEGLLMDVIEIDAASN---------NGVDDIREIIENVKYPPQEGKYKVYIMDEVHMLSQGAVNAFLKTLEEPPSN 149 (541)
T ss_pred HHHHHCCCCCCEEEECCCCC---------CCHHHHHHHHHHCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99985689887366244444---------788999999976104876787059999772338999999999998548777
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHH----HHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 416765044335730252036988647999899999999----7278889678999999759897899988145
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~----~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
++|||+|++|++|++||+||||+|.|++++.+++.+.|. +++.+++++++.++++.|+||+|+|++++++
T Consensus 150 ~~Filatte~~ki~~tI~SRcq~f~f~~i~~~~i~~~L~~I~~~E~i~~~~~al~lIa~~s~GsmRDAlslLdQ 223 (541)
T PRK05563 150 VIFILATTDPQKLPITILSRCQRFDFKRIKVKDIFKRLRKIVEEQGIFADDKSLNLIARMSDGAMRDALSILDQ 223 (541)
T ss_pred CEEEEECCCCCCCCHHHHHHEEEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 56999769844274556742135775438999999999999998499987899999997459977889999999
No 10
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=455.02 Aligned_cols=215 Identities=27% Similarity=0.398 Sum_probs=201.8
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CCCCHHHCCCCCCCH
Q ss_conf 9665555875656109299999999999828898166311798988899999999998177998-864312101267886
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF-SKAPVRMCNPDPCSP 79 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~-~~~~~~~~~~~~~~~ 79 (347)
|++|||||++|++|+||+++++.|.+++..||+||||||+||+|+||+++|+.||++|+|.... +..|||.|.+
T Consensus 6 vlarKYRP~~F~dvVGQ~~vv~~L~nai~~~ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~----- 80 (462)
T PRK06305 6 VSSRKYRPQTFSEILGQDAVVTVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAI----- 80 (462)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHH-----
T ss_conf 788763889876604909999999999984997623430389985999999999999679999888898876688-----
Q ss_pred HHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 79999678987545300100010134212323788755443102221111210353220554240001456777663034
Q gi|254780217|r 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 (347)
Q Consensus 80 ~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~ 159 (347)
|+.|.+|+|+|+++++...+ -+||+||++++.+.++|..|+|||+|||+||+|+.+|+|||||||||||+
T Consensus 81 -C~~I~~g~~~DViEiDaAs~---------~gVddIRel~e~v~~~P~~~~yKVyIIDEvhmLs~~AfNALLKtLEEPP~ 150 (462)
T PRK06305 81 -CKEISSGTSLDVIEIDGASH---------RGIEDIRQINETVLFTPSKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPQ 150 (462)
T ss_pred -HHHHHCCCCCCEEEECCCCC---------CCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCC
T ss_conf -89986389998686435534---------46689999997710088677505999815211799999999998618987
Q ss_pred CCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 341676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 160 ~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
+++|||+|+++++|++||+||||+|+|++++.+++.+.| .+++.+++++++..++..|+||+|+|+.++++
T Consensus 151 ~v~FILaTTe~~KIp~TIlSRCQrf~F~~i~~~~I~~~L~~I~~~E~i~~e~~AL~lIA~~a~GsmRDAlslLDQ 225 (462)
T PRK06305 151 HVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAQQDGIETSREALLPIARAAQGSLRDAESLYDY 225 (462)
T ss_pred CEEEEEEECCHHHCCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 749999818814285478765402332579999999999999998399859999999999858958789999999
No 11
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=459.10 Aligned_cols=215 Identities=27% Similarity=0.382 Sum_probs=203.3
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
+|.|||||++|++|+||+++++.|.+++.+||+||||||+||+|+||+++|+.||++|+|.......||+.|.+
T Consensus 4 aLyrkyRP~~F~dvvGQe~i~~~L~nal~~~ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~------ 77 (557)
T PRK07270 4 ALYRKYRSQTFDEMVGQEVVATTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDI------ 77 (557)
T ss_pred HHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 76766089987671481999999999998599540442108998689999999999957999899998887779------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|+.+..|+|||+++++... +.+||+||++.+++.++|.+|+|||+|||+||+||.+|+|||||||||||++
T Consensus 78 C~~i~~g~~~DviEidaas---------~~gVd~IRei~~~~~~~P~~~~yKV~IIDEah~Ls~~A~NALLKtLEEPP~~ 148 (557)
T PRK07270 78 CRDITNGSLEDVIEIDAAS---------NNGVDEIRDIRDKSTYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTEN 148 (557)
T ss_pred HHHHHCCCCCCEEEECCCC---------CCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCC
T ss_conf 9998758999748734777---------6788999999998423877788389997144534999999899985289987
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 41676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
|+|||+|+++++|||||+||||+|+|++++.+++.+.| .+++.+++++++..++..|+|++|+|++++++
T Consensus 149 ~vFIL~Ttep~kIl~TI~SRCQrf~F~~i~~~~i~~~L~~I~~~E~i~~~~~aL~~Ia~~a~G~mRdAlsiLdQ 222 (557)
T PRK07270 149 VVFILATTELHKIPATILSRVQRFEFKSIKTKAIREHLAWILDKEGISFEVEALNLIARRAEGGMRDALSILDQ 222 (557)
T ss_pred EEEEEEECCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 69999849947592888743000108889999999999999998399869999999999779968789999999
No 12
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=446.11 Aligned_cols=216 Identities=28% Similarity=0.379 Sum_probs=202.8
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC----CCCCCCHHHCCCCC
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779----98864312101267
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP----DFSKAPVRMCNPDP 76 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~----~~~~~~~~~~~~~~ 76 (347)
|+||||||++|++++||+.+++.|.+++..||+||||||+||+|+||||+|+.||+.|.|.. ++...||+.|.+
T Consensus 10 ~la~KyRP~~f~~liGQ~~~~~~l~n~i~~~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c~~-- 87 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKCTN-- 87 (507)
T ss_pred EEEECCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH--
T ss_conf 643200799765623939999999999973996634774587997889999999999679998888998888888767--
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 88679999678987545300100010134212323788755443102221111210353220554240001456777663
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
|+.+.+|.|+|+++++++.+. +||+||++++.+.+.|..|+|||+|||+||+|+.+|+|||||||||
T Consensus 88 ----c~~i~~~~~~dv~EiDaas~~---------gv~~ir~l~~~~~~~p~~~~~kv~iidE~hmls~~a~nallktlEe 154 (507)
T PRK06645 88 ----CISFNNHNHPDIIEIDAASKT---------SVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE 154 (507)
T ss_pred ----HHHHHCCCCCCEEEEECCCCC---------CHHHHHHHHHHCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHC
T ss_conf ----899865899985996378888---------8899999986355178767435899521422489999999997427
Q ss_pred CCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHH----HHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 0343416765044335730252036988647999899999999----72788896789999997598978999881457
Q gi|254780217|r 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 (347)
Q Consensus 157 Pp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~----~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~ 231 (347)
||++++|||+|+.+++||+||.||||+|+|++++.+++.+.|+ +++..++++++.++++.|+||+|+|+.++++.
T Consensus 155 pp~~~~Fi~atte~~kip~ti~srcq~f~~~~i~~~~i~~~l~~i~~~E~~~~~~~al~~ia~~a~Gs~RDalslldqa 233 (507)
T PRK06645 155 PPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKADIEALRIIAYKSEGSARDAVSILDQA 233 (507)
T ss_pred CCCCEEEEEECCCHHHCCHHHHHHCEEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8644389997485364837888543278754599799999999999976877778999999985599867899999999
No 13
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=442.64 Aligned_cols=301 Identities=26% Similarity=0.332 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~ 96 (347)
|++.++++. ..||+||||||+||+|+||.++|+.||++|+|.......|||.|.+ |+++.+|+|||++++.
T Consensus 8 ~~~~w~~l~---~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~s------C~~~~~~~HPD~~~i~ 78 (328)
T PRK05707 8 QQSLWQQLA---GRGRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKG------CQLLAAGSHPDNFVLE 78 (328)
T ss_pred CHHHHHHHH---HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH------HHHHHCCCCCCEEEEE
T ss_conf 489999999---7798220464479998679999999999984899999899988889------9998758999879984
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 (347)
Q Consensus 97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T 176 (347)
+. ..++.|+|||||+++++++++|.+|++||+||++||.||.+|||||||||||||++|+|||+|+++++||||
T Consensus 79 pe------~~~~~I~IdqIR~l~~~~~~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~lLpT 152 (328)
T PRK05707 79 PE------EADKPIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGQTVLLLISHQPSRLLPT 152 (328)
T ss_pred CC------CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCHHH
T ss_conf 26------667769799999999998317667895799950287738999999999850789875999860993448258
Q ss_pred HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCCHHHH
Q ss_conf 520369886479998999999997278889678999999759897899988145779999999998403-2343228999
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI-PRQEYALQKM 255 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 255 (347)
|+||||.++|++++.+++.+||.+...+...+....+..++.|+|++|+.+.+++..+.+..+++.+.. ..... ..
T Consensus 153 I~SRCq~~~~~~p~~e~~~~~L~~~~~~~~~~~a~~ll~la~G~p~~A~~l~~~~~~~~r~~~~~~l~~l~~~~~---~~ 229 (328)
T PRK05707 153 IKSRCQQLACPLPSNEPSLQWLQQALPESDAEERIELLTLAAGSPLRALQLHAQGVREQRARVVDGVKKLLKQQQ---SA 229 (328)
T ss_pred HHHCCEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC---CH
T ss_conf 874141334899899999999997556557899999999749999999987486689999999999999983878---89
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCH---H---------HHHHHHHHHHHHHHHHHHHH-HCCCC
Q ss_conf 999999831676999999999999999999998654-1004---5---------48999999999999999876-22799
Q gi|254780217|r 256 QQIADELLSQDQKIAFDFLIEFILKEICKSAKAAAL-SGQL---E---------EADQIAQIYFSLVKRVHAFS-MYNLD 321 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~---~---------~~~~l~~~~~~i~~~~~~~~-~~NLd 321 (347)
..+.+.+.+.+....++++..++.+.+......... ..+. . ....+....+.+.+..+... ..|+|
T Consensus 230 ~~~~~~~~k~~~~~~l~~l~~~~~D~l~~~~~~~~~~l~~~d~~~~i~~la~~~s~~~l~~~~~~l~~~r~~l~~~~NvN 309 (328)
T PRK05707 230 SQLAESWLKVPLPLLFDWFCDWAHLILRYQLTQDEEGLGLADMRKVLQYLAQKSPQAKVLALQQWLLEQRQKVLGKANLN 309 (328)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999975057999999999999999999825971410478899999999872999999999999999999986369988
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 79999999999972
Q gi|254780217|r 322 RRQMIFHLLSKARE 335 (347)
Q Consensus 322 ~~~~ll~ll~~l~~ 335 (347)
++.++..++.++..
T Consensus 310 ~~L~lE~Lll~~~~ 323 (328)
T PRK05707 310 RVLLLEALLVQWAG 323 (328)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 89999999999857
No 14
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=446.69 Aligned_cols=215 Identities=25% Similarity=0.354 Sum_probs=202.5
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC-----CCCCCCHHHCCCC
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779-----9886431210126
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNP-----DFSKAPVRMCNPD 75 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~-----~~~~~~~~~~~~~ 75 (347)
||||||||+.|++++||+.+++.|.+++..||++|||||+||+|+||||+|+.+|+.|+|.. +++..||+.|.+
T Consensus 12 ~l~~k~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~- 90 (600)
T PRK09111 12 VLARKYRPQTFDDLIGQEAMVRTLRNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEH- 90 (600)
T ss_pred EEEECCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH-
T ss_conf 4321017987766338599999999999729842047645789878999999999996698876668998898998865-
Q ss_pred CCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 78867999967898754530010001013421232378875544310222111121035322055424000145677766
Q gi|254780217|r 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 (347)
Q Consensus 76 ~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE 155 (347)
|+.|.+|+|+|+++++.+.+. +||+||++++.+.+.|..|+|||+|||++|+|+.+|.||||||||
T Consensus 91 -----c~~i~~~~~~d~~e~daas~~---------~v~~~r~~~~~~~~~p~~~~~kv~iidevhmls~~afnallktle 156 (600)
T PRK09111 91 -----CQAIMEGRHVDVIEMDAASHT---------GVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE 156 (600)
T ss_pred -----HHHHHCCCCCCEEEEECCCCC---------CHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -----898866899875885155457---------888999999860538877754699960011057999999998762
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 3034341676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 156 EPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
|||+++.|||.|+.+++|++||+||||+|.|++++.+++.+.| .+++..+.++++..+++.|+||+|+|++++++
T Consensus 157 epp~~~~fi~att~~~k~p~ti~src~~f~~~~~~~~~~~~~l~~i~~~e~~~~~~~al~~ia~~a~GS~RDaLSlLDQ 235 (600)
T PRK09111 157 EPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEAEVLAAHLARIAEKEGVEVEPDALALIARAAEGSVRDGLSLLDQ 235 (600)
T ss_pred CCCCCEEEEEECCCHHHCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 5986549999628534375899854412010579999999999999986076866779999999748984218999999
No 15
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=452.03 Aligned_cols=251 Identities=26% Similarity=0.400 Sum_probs=217.9
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
||+|||||++|++|+||+++++.|.+++..||+||||||+||+|+||+|+|+.||+.|+|..+.+..|||.|.+
T Consensus 5 vlark~RP~~F~e~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~------ 78 (704)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS------ 78 (704)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 77765188747564186999999999998199752375027898788899999999967999999997877776------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|+.|..|.|+|+++|+...+ -+||+||+|++.+.++|..|+|||+|||++|+|+.+|.|||||||||||++
T Consensus 79 C~~i~~g~~~D~~EiDaAs~---------~~vdd~R~l~~~~~y~P~~~~yKVyiiDEvhmLs~~afNAlLKtLEEPP~~ 149 (704)
T PRK08691 79 CTQIDAGRYVDLLEIDAASN---------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (704)
T ss_pred HHHHHCCCCCCEEEEECCCC---------CCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 78785589987477424544---------588999999985346886785359998315443899999999861479756
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH----
Q ss_conf 41676504433573025203698864799989999999----9727888967899999975989789998814577----
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC---- 232 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~---- 232 (347)
++|||.|+++++|+.||+||||.|+|++++.+++...| .++++.++++++..+++.++||+|+|++++++..
T Consensus 150 v~FilaTTdp~Klp~TIlSRC~~f~l~~~~~~~i~~~L~~i~~~E~i~~e~~al~~ia~~a~Gs~RDalslldQaia~~~ 229 (704)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 (704)
T ss_pred EEEEEECCCHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 08998548846475899988877102689999999999999998398568999999999757857779889999999648
Q ss_pred HH-HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 99-999999984032343228999999999831676999
Q gi|254780217|r 233 DK-IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIA 270 (347)
Q Consensus 233 ~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (347)
.+ ..+....++..... ..+..+.+.+...+....
T Consensus 230 g~~~~~~v~~mLG~~d~----~~~~~ll~al~~~d~~~~ 264 (704)
T PRK08691 230 GKVAENDVRQMIGAVDK----QYLYELLTGIINQDGAAL 264 (704)
T ss_pred CCCCHHHHHHHHCCCCH----HHHHHHHHHHHHCCHHHH
T ss_conf 96269999998588877----899999999995589999
No 16
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=440.44 Aligned_cols=210 Identities=25% Similarity=0.365 Sum_probs=193.8
Q ss_pred CCHHHHCCHHHHHHHHHHHHHCCC------------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 756561092999999999998288------------98166311798988899999999998177998864312101267
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCSGR------------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~~~------------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
+-|++|+||+++++.|.+++.++| ++|||||+||+|+||+++|+.||+.|+|... +..|||.|.+
T Consensus 2 ~~f~~ivGQe~v~~~L~~A~~~~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~-~~~~cg~C~~-- 78 (395)
T PRK07940 2 GVWDRLVGQDAVVAELRAAARAARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDP-GVPGCGECRA-- 78 (395)
T ss_pred CCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCHH--
T ss_conf 9701315929999999999983634344333346876603763689987889999999999669999-9999987878--
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 88679999678987545300100010134212323788755443102221111210353220554240001456777663
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
|+++.+|+|||++++.+ .+.+|+|||||+++++++++|.+|+|||+|||+||+||.+|+|||||||||
T Consensus 79 ----C~~i~~g~hpDv~~i~p--------~~~~i~id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m~~~a~NalLKtLEE 146 (395)
T PRK07940 79 ----CRTVLAGTHPDVRVVVP--------EGLSIGVDEVREIVQIAARRPTTGRWRIVVIEDADRLTERAANALLKAVEE 146 (395)
T ss_pred ----HHHHHCCCCCCEEEEEC--------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCC
T ss_conf ----99987689987189826--------877688999999999985273037955999807787489999999985217
Q ss_pred CCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHH
Q ss_conf 034341676504433573025203698864799989999999972788896789999997598978999881457799
Q gi|254780217|r 157 PPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK 234 (347)
Q Consensus 157 Pp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~ 234 (347)
||++|+|||+|+++++|||||+||||.++|++++.+++.++|.+. ...+++...+++.++.|++++|..+..++...
T Consensus 147 Pp~~~~fiL~t~~~~~llpTI~SRcq~~~f~~~~~~~i~~~L~~~-~gi~~~~A~~aA~~s~G~igrA~~la~d~~~~ 223 (395)
T PRK07940 147 PPPRTVWLLCAPSVEDVLPTIRSRCRHVALRTPSVEAVADVLVRR-DGVDPETAQWAARASGGHIGRARRLATDEEAR 223 (395)
T ss_pred CCCCEEEEEEECCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHH
T ss_conf 888869998739978744688744000237999999999999870-19998999999998089889999980688899
No 17
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=0 Score=445.00 Aligned_cols=215 Identities=28% Similarity=0.430 Sum_probs=203.0
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC-----CCCCCCCCHHHCCCC
Q ss_conf 966555587565610929999999999982889816631179898889999999999817-----799886431210126
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ-----NPDFSKAPVRMCNPD 75 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc-----~~~~~~~~~~~~~~~ 75 (347)
||+|||||++|++++||+++.+.|.+++..||+||||||+|++|+||||+|+.||+.|+| +.+.+..|||.|.+
T Consensus 5 vlark~RP~~F~~~vGQ~~v~~~l~na~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~- 83 (721)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRA- 83 (721)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH-
T ss_conf 6765407986655328599999999999719975447502799888989999999997689986678987887877654-
Q ss_pred CCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 78867999967898754530010001013421232378875544310222111121035322055424000145677766
Q gi|254780217|r 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 (347)
Q Consensus 76 ~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE 155 (347)
|+.|..|.|+|+++|+...+. +||+||+|++.+.++|..|+|||||||++|+|+.+|.||||||||
T Consensus 84 -----C~~i~~g~~~d~~EiDaas~~---------~v~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~~afnalLKtlE 149 (721)
T PRK12323 84 -----CTEIDAGRFVDYIEMDAASNR---------GVDEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (721)
T ss_pred -----HHHHHCCCCCCEEEEECCCCC---------CHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf -----687756898764774367678---------889999999854558876644699985400058999999998401
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 3034341676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 156 EPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
|||++++|||.|++++||+.||+||||+|+|++++.+++...| .++++.++++.+..+++.++||+|+|++++++
T Consensus 150 ePP~hv~FilaTT~~~Kip~TilSRc~~f~~~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~RDalslldQ 228 (721)
T PRK12323 150 EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMRDALSLTDQ 228 (721)
T ss_pred CCCCCEEEEEECCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 7975538999438634485889877654234789999999999999998399779999999999758964768889999
No 18
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=447.37 Aligned_cols=215 Identities=26% Similarity=0.440 Sum_probs=205.1
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
||+|||||++|++++||+++++.|.+++..||+||||||+||+|+||+|+|+.||++|+|..+.+..|||.|.+
T Consensus 5 ~lark~Rp~~f~~~vGQ~~v~~~l~na~~~~r~~haylf~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~------ 78 (643)
T PRK07994 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN------ 78 (643)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 77765288866665387999999999998298663487458998888899999999967999999997876776------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|+.|..|.|+|+++|+...+ .+||+||++.+.+.++|..|+|||||||++|+|+.+|.|||||||||||++
T Consensus 79 c~~i~~g~~~d~~eidaas~---------~~vd~~rel~~~~~y~p~~~r~kvyiidEvhmls~~afnalLKtlEePp~h 149 (643)
T PRK07994 79 CREIEQGRFVDLIEIDAASR---------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAH 149 (643)
T ss_pred HHHHHCCCCCCEEEEECCCC---------CCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCHH
T ss_conf 89886589887588636777---------888999999984466887785369997221015899999999862378610
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 41676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
+.|||.|+++++|++||+|||+.|.|++++.+++.+.| .++++..++.++..+++.++||+|+|++++++
T Consensus 150 v~filaTT~~~k~p~TilSRC~~f~~~~~~~~~i~~~l~~i~~~e~i~~~~~al~~ia~~a~gs~rdalsl~dq 223 (643)
T PRK07994 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAADGSLRDALSLTDQ 223 (643)
T ss_pred CEEEEECCCHHHCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 08998607745484789977765001669999999999999997599878899999999747865668889999
No 19
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=442.13 Aligned_cols=250 Identities=26% Similarity=0.394 Sum_probs=217.4
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
||+|||||++|++++||+++++.|.+++..||+||||||+|++|+||||+|+.||+.|+|..+.+..|||.|.+
T Consensus 5 vlark~RP~~f~e~vGQ~~v~~~l~nal~~~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~------ 78 (816)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA------ 78 (816)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 77755089857662384999999999997098631475117898888899999999867899999897877555------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|+.|..|.+.|+++|+...+. +||+||+|.+...+.|..|+|||+|||++|+|+..|.|||||||||||++
T Consensus 79 C~~i~~g~~~d~iEiDaAS~~---------~vd~~r~l~~~~~y~p~~~r~KvyiiDEvHmls~~afnalLKtlEepP~h 149 (816)
T PRK07003 79 CREIDEGRFVDYVEMDAASNR---------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (816)
T ss_pred HHHHHCCCCCCEEEEECCCCC---------CHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 787755887754786355435---------76899999986224786674479998415433999999999840379866
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH----
Q ss_conf 41676504433573025203698864799989999999----9727888967899999975989789998814577----
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC---- 232 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~---- 232 (347)
+.|||.|+++++|+.||+|||+.|+|++++.+++.+.| .++++.++++.+.++++.++||+|+|++++++..
T Consensus 150 v~FilaTTd~~k~p~tilSRc~~f~l~~~~~~~i~~~l~~i~~~E~i~~e~~al~lia~~a~GsmRDalsl~dQaia~~~ 229 (816)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA 229 (816)
T ss_pred EEEEEECCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 48999558801152889877765223679999999999999998299779999999999767737888859999998469
Q ss_pred -HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHH
Q ss_conf -9999999998403234322899999999983167699
Q gi|254780217|r 233 -DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKI 269 (347)
Q Consensus 233 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (347)
.-.......++..... ..+..+.+.+...+...
T Consensus 230 g~~~~~~v~~mLG~~d~----~~~~~ll~al~~~d~~~ 263 (816)
T PRK07003 230 NEVTETAVSGMLGALDQ----TYMVRLLDALAAADGPE 263 (816)
T ss_pred CCCCHHHHHHHHCCCCH----HHHHHHHHHHHHCCHHH
T ss_conf 97379999998588877----89999999999558999
No 20
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=443.43 Aligned_cols=249 Identities=23% Similarity=0.402 Sum_probs=216.9
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
||+|||||+.|++++||+++++.|.|++..||+||||||+||+|+||+|+|+.||+.|+|..+.+..|||.|.+
T Consensus 5 vlark~RP~~f~e~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~------ 78 (717)
T PRK08853 5 ALARKWRPTQFKEVVGQSHVLTALENALAHNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCAT------ 78 (717)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC------
T ss_conf 77765179856551385999999999997099740576108898889899999999867899999997888702------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|+.|..|.+.|+++|+...+ .+||+||+|.+.+.+.|..|+|||+|||++|+|+.+|.|||||||||||++
T Consensus 79 C~~i~~g~~~d~~EiDaAs~---------~~vdd~rel~~~~~y~p~~~~yKvyiiDEvHmls~~afnAlLKtlEEPP~h 149 (717)
T PRK08853 79 CKEIDEGRFVDLLEIDAASR---------TKVEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEY 149 (717)
T ss_pred HHHHHCCCCCCEEEECCCCC---------CCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 67674478775245405656---------788999999985554887785479998305443899999998760378756
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH----
Q ss_conf 41676504433573025203698864799989999999----9727888967899999975989789998814577----
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC---- 232 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~---- 232 (347)
+.|||.|+++++|+.||+||||+|.|++++.+++.+.| .++++...++++..+++.++||+|+|++++++..
T Consensus 150 v~FilaTT~~~kip~TilSRc~~f~l~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~Rdalsl~dqaia~~~ 229 (717)
T PRK08853 150 VKFLLATTDPQKLPVTILSRCLQFHLKPISVDQIHQQLDFVLDKEQVSAEARALGLIAHAADGSMRDALSLTDQAIALGN 229 (717)
T ss_pred EEEEEECCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 48998438734373889876544232689999999999999997598769999999999768837788889999999658
Q ss_pred -HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHH
Q ss_conf -999999999840323432289999999998316769
Q gi|254780217|r 233 -DKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQK 268 (347)
Q Consensus 233 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (347)
.-.......++..... .....+.+.+...+..
T Consensus 230 g~~~~~~v~~mlg~~d~----~~~~~ll~al~~~d~~ 262 (717)
T PRK08853 230 GQVTTDIVSHMLGTLDT----DQAIHLLEAISSKQPQ 262 (717)
T ss_pred CCCCHHHHHHHHCCCCH----HHHHHHHHHHHHCCHH
T ss_conf 97169999998588877----8999999999955899
No 21
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=0 Score=436.34 Aligned_cols=249 Identities=23% Similarity=0.371 Sum_probs=216.9
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
||+|||||++|++++||+++.+.|.+++..||+||||||+|++|+||+|+|+.||+.|+|..+.+..|||.|.+
T Consensus 5 vlark~rp~~f~~~vgq~~v~~~l~~a~~~~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~------ 78 (696)
T PRK06872 5 VLARKWRPKTFSEVVGQEHILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECEN------ 78 (696)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 77765188756452385999999999997198630475117898888899999999867899999997888622------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|+.|.+|.|.|+++|+...+ .+||++|+|.+-+.+.|..|+|||+|||++|+|+.+|.|||||||||||++
T Consensus 79 c~~i~~g~~~d~~eidaas~---------~~v~~~r~l~~~~~~~p~~~~~kvy~idevhmls~~~fnallktleepp~~ 149 (696)
T PRK06872 79 CKAIEEGNFIDLIEIDAASR---------TKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEY 149 (696)
T ss_pred HHHHHCCCCCCEEEEECCCC---------CCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 57674478775467505655---------788999999984545776775479997005443899999998750279754
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCC-----
Q ss_conf 41676504433573025203698864799989999999----972788896789999997598978999881457-----
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~----- 231 (347)
+.|||.|+++++|+.||+|||+.|+|++++.+.+...| .++++.+++..+..+++.++||+|+|++++++.
T Consensus 150 v~f~latt~~~k~p~tilsrc~~f~~~~~~~~~i~~~l~~i~~~e~~~~~~~al~~~a~~a~gs~rdalsl~dqai~~~~ 229 (696)
T PRK06872 150 VKFLLATTDPQKLPITILSRCMQFHLKALDQTQIAQHLEFILTQENIPFESPALEKLAKAAQGSIRDSLSLTDQAIAMSN 229 (696)
T ss_pred EEEEEECCCHHHCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 48998438632274889876653002689999999999999998499779999999999758956778889999999758
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHH
Q ss_conf 7999999999840323432289999999998316769
Q gi|254780217|r 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQK 268 (347)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (347)
+.-......+++..... .....+.+.+...+..
T Consensus 230 g~~~~~~v~~mlg~~~~----~~~~~l~~a~~~~d~~ 262 (696)
T PRK06872 230 ANITLDVVSNMLGLLDD----NQPIDILYALQQGNGE 262 (696)
T ss_pred CCCCHHHHHHHHCCCCH----HHHHHHHHHHHHCCHH
T ss_conf 96169999998588877----7999999999955899
No 22
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=440.89 Aligned_cols=211 Identities=29% Similarity=0.393 Sum_probs=194.4
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC-CCCCCCCHHHCCCCCCCH
Q ss_conf 9665555875656109299999999999828898166311798988899999999998177-998864312101267886
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN-PDFSKAPVRMCNPDPCSP 79 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~-~~~~~~~~~~~~~~~~~~ 79 (347)
+|+|||||+.|++|+||+.+++.|.+++..||+||||||+||+|+||+|+|+.||++|+|. ......||+.|..
T Consensus 7 ~L~RKYRPk~F~EVIGQe~Vv~tL~nAI~~gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~----- 81 (718)
T PRK07133 7 ALYRKYRPKKFDEIKGQDHIIETLKNIIKSGKISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIE----- 81 (718)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH-----
T ss_conf 899872899754422859999999999974997505862389986889999999999679999999997702143-----
Q ss_pred HHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 79999678987545300100010134212323788755443102221111210353220554240001456777663034
Q gi|254780217|r 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 (347)
Q Consensus 80 ~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~ 159 (347)
| .+.++|+++++.+.+ -+||+||++++.+.+.|..|+|||+|||+||+|+.+|+|||||||||||+
T Consensus 82 -~----~~~s~DViEIDAASn---------~gVDdIReLie~v~y~P~~gkYKVyIIDEvHMLS~~AfNALLKtLEEPP~ 147 (718)
T PRK07133 82 -N----FNNNLDIIEMDAASN---------NGVDEIRELRENVKNLPQISKYKIYIIDEVHMLSKSAFNALLKTLEEPPK 147 (718)
T ss_pred -C----CCCCCCEEEECCCCC---------CCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf -0----478987377545566---------88899999999825588778724999966200799999999985027987
Q ss_pred CCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 341676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 160 ~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
+++|||+|++|++||+||+||||+|.|++++.+++...| .+++..++++++..++..|+||+|+|+.++++
T Consensus 148 hvvFILaTTep~KIP~TIlSRCQrFdFkrI~~~~I~~~L~~I~~kE~I~~e~eAL~lIA~~a~GSmRDAlSlLDQ 222 (718)
T PRK07133 148 HVIFILATTDVQKIPLTILSRVQRFNFRRISEDVIVHQLENILEKEKIKYEKNALKLIASLASGSLRDALSIADQ 222 (718)
T ss_pred CCEEEEEECCHHHCCHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 827999708825484877412203358889999999999999998599778999999999768848889879999
No 23
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=432.57 Aligned_cols=305 Identities=19% Similarity=0.228 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~ 96 (347)
|...++.|..++..||+||||||+||+|+||.++|+.||++|+|....+.++||.|.+ |+++.+|+|||++++.
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~------C~l~~~~~HPD~~~i~ 80 (334)
T PRK07993 7 LRPDYEKLVGSYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRG------CQLMQAGTHPDYYTLT 80 (334)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------HHHHHCCCCCCEEEEC
T ss_conf 7899999999998598104675479999889999999999981899999999999978------9998668999847753
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 (347)
Q Consensus 97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T 176 (347)
.. +.++.|+|||||+++++++++|++|++||+||++||.||.+|||||||||||||++|+|||+|+++++||||
T Consensus 81 pe------~~~~~I~IdqIR~l~~~~~~~~~~g~~kV~iI~~Ae~mn~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpT 154 (334)
T PRK07993 81 PE------KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPEKTWFFLACREPARLLAT 154 (334)
T ss_pred CC------CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCH
T ss_conf 42------234559999999999998436656994799976677759999999998612799884999866985657238
Q ss_pred HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 52036988647999899999999727888967899999975989789998814577999999999840323432289999
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQ 256 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 256 (347)
|+||||.++|.+++.+++.+||.+... ..++....+..++.|+|+.|..+++++....+..+.+.+....... +..
T Consensus 155 I~SRCq~~~~~~~~~~~~~~wL~~~~~-~~~~~~~~al~la~Gspl~A~~l~~~~~~~~r~~l~~~l~~~l~~~---d~~ 230 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREVT-MSQEALLAALRLSAGAPGAALALLQPERWQQREALCQALAYSLPSG---DWY 230 (334)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC---CHH
T ss_conf 875230415899799999999987368-9889999999984998999999825658999999999999987036---799
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHH
Q ss_conf 9999983167699999999999999999999865410-----------04548999999999999999876-22799799
Q gi|254780217|r 257 QIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSG-----------QLEEADQIAQIYFSLVKRVHAFS-MYNLDRRQ 324 (347)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----------~~~~~~~l~~~~~~i~~~~~~~~-~~NLd~~~ 324 (347)
.+...+..+.....++++..++.+.+..........+ .......+...++.+.+..+... ..|+|++.
T Consensus 231 ~ll~~l~~~~~~~~L~wl~~ll~D~l~~~~~~~~l~n~D~~~~i~~la~~~s~~~L~~~~~~i~~~r~~L~~~~NlN~qL 310 (334)
T PRK07993 231 SLLPALNHEQAPARLHWLATLLMDALKRQHGAAQVTNVDQPPLVAQLANHLSPARLQAILGDVCHCREQLLSVTGVNREL 310 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999716348999999999999999986085301487799999999850999999999999999999975268999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999997278
Q gi|254780217|r 325 MIFHLLSKARECN 337 (347)
Q Consensus 325 ~ll~ll~~l~~~~ 337 (347)
++.+++.++++.-
T Consensus 311 lLE~lll~~~~~l 323 (334)
T PRK07993 311 LLTDLLLRIEHYL 323 (334)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999973
No 24
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=100.00 E-value=0 Score=437.14 Aligned_cols=215 Identities=25% Similarity=0.396 Sum_probs=205.4
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
||+|||||++|++++||+++++.|.|++..||+||||||+|++|+||+|.|+.||+.|+|..+.+..|||.|.+
T Consensus 5 ~lark~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~------ 78 (705)
T PRK05648 5 VLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSV------ 78 (705)
T ss_pred HHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 66553178757663281999999999997098630465007898889899999999867789998897877600------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|+.|..|.|+|+++|+...+ -+||++|+|.+.+.++|..|+|||||||++|+|+..|.|||||||||||++
T Consensus 79 c~~i~~~~~~d~~e~d~as~---------~~v~~~r~~~~~~~~~p~~~~~kv~~idevhmls~~~fnallktleepp~~ 149 (705)
T PRK05648 79 CREIDEGRFVDLIEVDAASR---------TKVEDTRELLDNVQYAPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPH 149 (705)
T ss_pred HHHHHCCCCCCEEEECCCCC---------CCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHCCCCCCC
T ss_conf 46662489776344515544---------788999999985551776774579998426541799999998740479754
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 41676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
+.|||.|+++++|+.||+|||+.|+|++++.+++.+.| .++++.+.+..+..+++.++||+|+|+.++++
T Consensus 150 v~f~~att~~~k~p~t~~src~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~g~~rd~ls~~dq 223 (705)
T PRK05648 150 VKFLLATTDPQKLPVTILSRCLQFSLKNMSPERVVEHLSHVLGAENVPFEEDALWLLGRAADGSMRDAMSLTDQ 223 (705)
T ss_pred EEEEEECCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 59998428735375899976643023689999999999999997599778999999999748967779999999
No 25
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=430.54 Aligned_cols=296 Identities=22% Similarity=0.300 Sum_probs=223.6
Q ss_pred CCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCC
Q ss_conf 75656109299999999999828898166311798988899999999998177998864312101267886799996789
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (347)
++|++|+||+.+++.|.+++.+||+||||||+||+|+||+++|+.||++++|... .++
T Consensus 1 M~f~~iiGq~~i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~----------------------~~~ 58 (313)
T PRK05564 1 MSFRTIIGHENIKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANKILGKSE----------------------QRE 58 (313)
T ss_pred CCHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC----------------------CCC
T ss_conf 9832326829999999999987998750432799985099999999999828997----------------------788
Q ss_pred CCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 87545300100010134212323788755443102221111210353220554240001456777663034341676504
Q gi|254780217|r 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 (347)
Q Consensus 89 hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~ 168 (347)
|||++++... .+++|+|||||+++++++++|.+|+|||+|||+||.||.+|||||||||||||++|+|||+|+
T Consensus 59 ~~D~~~~~~~-------~~~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEPP~~t~fIL~t~ 131 (313)
T PRK05564 59 YVDIIEYKPI-------NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred CCCEEEEECC-------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf 9865886332-------256999899999999984086258956999807777589999998455036899858998649
Q ss_pred CCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHH-HHHHHHHHHCCCC
Q ss_conf 433573025203698864799989999999972788896789999997598978999881457799-9999999840323
Q gi|254780217|r 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK-IISSYIDLIHIPR 247 (347)
Q Consensus 169 ~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~-~~~~~~~~l~~~~ 247 (347)
++++|||||+||||.++|+|++.+++.+||.+.....+++....++.+++|++++|..+++++... .++...+++....
T Consensus 132 ~~~~lLpTI~SRCQ~~~f~~l~~~~i~~~L~~~~~~~~~~~~~~~~~~s~G~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 211 (313)
T PRK05564 132 NLEQILDTIKSRCQIYKLNRLSKEDIEKFISYKYNDIDEENKNSAIAFSDGIPGKVEKFIEDDSLKDIRNMSLEILKDID 211 (313)
T ss_pred CHHHCCCHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 83547577870653566899899999999998625899999999999829987999998405799999999999999998
Q ss_pred CCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHH------------HHHHHHHHHHHHHHHH
Q ss_conf 432289999999998316--7699999999999999999999-865410045------------4899999999999999
Q gi|254780217|r 248 QEYALQKMQQIADELLSQ--DQKIAFDFLIEFILKEICKSAK-AAALSGQLE------------EADQIAQIYFSLVKRV 312 (347)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~------------~~~~l~~~~~~i~~~~ 312 (347)
. ........+.+.+... .....++.+..++.+.+..... ......+.. ....+......+.+..
T Consensus 212 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~k~~~~~~~~~n~d~~~~l~~~a~~~~~~~l~~~~~~l~~a~ 290 (313)
T PRK05564 212 K-SNINIIIKYENFLISYKENWEEILTCILSYIRDSLLFKETGNNELIINVDKIEDIKEISEKYSYKKLNKMIEIINDAR 290 (313)
T ss_pred C-CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 6-799999999999998693499999999999999998515598320168889999999985499999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 98762279979999999999972
Q gi|254780217|r 313 HAFSMYNLDRRQMIFHLLSKARE 335 (347)
Q Consensus 313 ~~~~~~NLd~~~~ll~ll~~l~~ 335 (347)
... ..|.|++..+..++.++.+
T Consensus 291 ~~l-~~n~N~~L~le~lllkl~e 312 (313)
T PRK05564 291 NNL-SSNTNSTLVFDSMLIKMQE 312 (313)
T ss_pred HHH-HHCCCHHHHHHHHHHHHHH
T ss_conf 998-7459989999999998843
No 26
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=436.69 Aligned_cols=215 Identities=31% Similarity=0.460 Sum_probs=205.1
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
+|+|||||+.|++++||+++...|.+++..+|++|||||+||+|+||+|+|+.||+.|+|.+.....||+.|..
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~------ 78 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS------ 78 (515)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH------
T ss_conf 89988583007776364899999999998084233365137777671049999999956889877772253166------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|+.|..|+|+|+++++.+.+ .+||+||+|++.+.+.|..|+|||+|||++|+|+.+|.|||||||||||++
T Consensus 79 Ck~I~~g~~~DviEiDaASn---------~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~h 149 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASN---------TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSH 149 (515)
T ss_pred HHHHHCCCCCCCHHHHHHHC---------CCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 68651488641011364445---------486799999987246886666418998318764378888875111368667
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 41676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
++|||.|+++++|++||+||||+|.|++++.+++...| .++++..+++++.++++.++||+|++++++++
T Consensus 150 V~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq 223 (515)
T COG2812 150 VKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQ 223 (515)
T ss_pred EEEEEECCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 48998538867684045521220222579999999999999874487547999999999828974567778999
No 27
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=439.18 Aligned_cols=214 Identities=26% Similarity=0.366 Sum_probs=199.4
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 66555587565610929999999999982889816631179898889999999999817799886431210126788679
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~ 81 (347)
|.|||||+.|++|+||+++++.|++++..||++|||||+||+|+||+|+|+.||+.|+|.......||+.|.+ |
T Consensus 5 LyrkyRP~~F~eviGQe~v~~~L~~Ai~~gri~HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~s------C 78 (775)
T PRK07764 5 LYRRYRPATFAEVVGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDS------C 78 (775)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------H
T ss_conf 6655078876662285999999999998199763376237888788899999999966899999898888763------7
Q ss_pred HHHHCCC--CCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 9996789--87545300100010134212323788755443102221111210353220554240001456777663034
Q gi|254780217|r 82 KQMASHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 (347)
Q Consensus 82 ~~i~~~~--hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~ 159 (347)
+.|..|. |.|+++++... +-+||+||+|++.+.++|..++|||+|||++|+||.+|+|||||||||||+
T Consensus 79 ~~i~~g~~~~~DviEiDAAS---------~~gVddiReL~e~~~y~P~~~ryKVyIIDEaHmls~~afNALLKtLEEPP~ 149 (775)
T PRK07764 79 VALAPGGPGSLDVVEIDAAS---------HGGVDDARELRERAFFAPAQSRYRIFIIDEAHMVTTAGFNALLKIVEEPPE 149 (775)
T ss_pred HHHHCCCCCCCCEEEECCCC---------CCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHCHHHHHHHHHHHCCCCC
T ss_conf 88863898888668731565---------568899999998547687678635999853544079999999886227864
Q ss_pred CCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHH----HHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 3416765044335730252036988647999899999999----7278889678999999759897899988145
Q gi|254780217|r 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 160 ~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~----~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
+++|||+|+++++|++||+||||+|.|+.++.+++.++|. ++++.++++.+.++++.+.||+|++++++++
T Consensus 150 hvvFIlaTTep~kip~TI~SRcq~f~Fr~i~~~~~~~~l~~i~~~E~i~~~~~al~li~r~~~Gs~RDalS~ldQ 224 (775)
T PRK07764 150 HLIFIFATTEPEKVIGTIRSRTHHYPFRLVPPGTMRPYLERICAQEGVVVDDAVLPLVIRAGGGSPRDTLSVLDQ 224 (775)
T ss_pred CEEEEEECCCHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 627999548735471677641023452669999999999999998399879899999999828966768999999
No 28
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=432.66 Aligned_cols=215 Identities=29% Similarity=0.451 Sum_probs=205.3
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
||+|||||++|++++||+++++.|.|++..||+||||||+|++|+||+|.|+.||+.|+|..+.+..|||.|.+
T Consensus 5 ~~a~k~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~------ 78 (663)
T PRK08770 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPA------ 78 (663)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 77755088746452285999999999997099740476227998888899999999867899999997877877------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
|+.|..|.|+|+++|+...+ -+||++|+|.+.+.+.|..|+|||||||++|+|+..|.|||||||||||++
T Consensus 79 c~~i~~~~~~d~~e~daas~---------~~v~~~r~~~~~~~~~p~~~~~kvy~idevhmls~~~fna~lktleepp~~ 149 (663)
T PRK08770 79 CLDIDAGRYIDLLEIDAASN---------TGVDDVREVIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEH 149 (663)
T ss_pred HHHHHCCCCCCEEEEECCCC---------CCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 89885489886588646765---------888999999984435887774369997004332899999998740278644
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 41676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
+.|||.|+++++|+.||+|||+.|+|++++.+++...| .++++.+.+.++..+++.++||+|+|++++++
T Consensus 150 v~f~~att~~~k~p~t~~src~~f~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~gs~rd~lsl~~q 223 (663)
T PRK08770 150 VKFLLATTDPQKLPVTVLSRCLQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQ 223 (663)
T ss_pred EEEEEECCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 28998548733374899988876343779999999999999998399769999999999747856778889999
No 29
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=425.08 Aligned_cols=301 Identities=20% Similarity=0.233 Sum_probs=231.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~ 96 (347)
|...++.|.+++.+||+||||||+||+|+||+++|+.||++++|.......|||.|.+ |+++.+|+|||++++.
T Consensus 6 l~~~~~~l~~~~~~~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~s------C~l~~~g~HPD~~~i~ 79 (324)
T PRK06871 6 LQPIYQQITQTFLQGRGHHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHS------CHLFQAGNHPDFHILE 79 (324)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH------HHHHHCCCCCCEEEEE
T ss_conf 5799999999998699543787689999789999999999982899999998888989------9999738999879984
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 (347)
Q Consensus 97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T 176 (347)
.. .+++|+||+||+++++++.+|.+|++||+||++||.||.+|+|||||||||||++|+|||+|+++++||||
T Consensus 80 ~~-------~~k~I~vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~~~fiL~t~~~~~ll~T 152 (324)
T PRK06871 80 PI-------DGKDIGVDQVREINEKVSQFAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSASLLAT 152 (324)
T ss_pred CC-------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCH
T ss_conf 67-------88878899999999998646220596699975888857999999999833898783899987870103240
Q ss_pred HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 52036988647999899999999727888967899999975989789998814577999999999840323432289999
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQ 256 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 256 (347)
|+||||.++|++|+.+++.+||.+.... ...+......+++|+|+.|+.+++++....+..+...+.......+ ..
T Consensus 153 I~SRCq~~~~~~p~~~~~~~wL~~~~~~-~~~~~~~al~~~~g~pl~A~~~~~~~~~~~r~~~~~~l~~~~~~~~---~~ 228 (324)
T PRK06871 153 IYSRCQTWLIHVPEEQIALDWLQAQSSG-EIQEIQTALRINYGRPLLALTFLEQGLLEQRKTFLRQFWLFYRRRS---PL 228 (324)
T ss_pred HHHCCCCEECCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC---HH
T ss_conf 8626612008994999999999974688-7299999999769987999998687799999999999999971689---99
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHHHHHHHHHC-CCCHH
Q ss_conf 99999831676999999999999999999998654100------------454899999999999999987622-79979
Q gi|254780217|r 257 QIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ------------LEEADQIAQIYFSLVKRVHAFSMY-NLDRR 323 (347)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------------~~~~~~l~~~~~~i~~~~~~~~~~-NLd~~ 323 (347)
.+...+.++.....++++..++.+.+...........+ ......+...++.+.+..++.... |+|+.
T Consensus 229 ~ll~~~~k~~~~~~L~wL~~~l~D~lk~k~g~~~~~in~D~~~~i~~la~~~s~~~L~~~~~~l~~~r~~L~~~~~lN~e 308 (324)
T PRK06871 229 ELLPLFDKEKVLQQLDWLLAFLSDALKAKLDIDSGWINQDLGRGILQFSQQQSAQGLLKAIQIMQKVRSDLLQINAVNQE 308 (324)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99999751458889999999999999984488756075889999999998659999999999999999998445787899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999997
Q gi|254780217|r 324 QMIFHLLSKAR 334 (347)
Q Consensus 324 ~~ll~ll~~l~ 334 (347)
.++.+.|.++.
T Consensus 309 Lll~~~L~~l~ 319 (324)
T PRK06871 309 LILLDGLTRLV 319 (324)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 30
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=420.22 Aligned_cols=299 Identities=21% Similarity=0.250 Sum_probs=225.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CCCCHHHCCCCCCCHHHHHHHCCCCCCEEEE
Q ss_conf 299999999999828898166311798988899999999998177998-8643121012678867999967898754530
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF-SKAPVRMCNPDPCSPFVKQMASHALHDFLYL 95 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~-~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i 95 (347)
|+..|+.|.. ..+|+||||||+||.|+||.++|++||+++||+... +..|||.|.+ |+++.+|+|||+++|
T Consensus 6 ~~~~w~~l~~--~~~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~s------C~~~~~~~HPD~~~i 77 (342)
T PRK06964 6 QTDDWNRLQA--LRARWPHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAA------CTWFAQGNHPDYRIV 77 (342)
T ss_pred CHHHHHHHHH--CCCCHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHH------HHHHHCCCCCCEEEE
T ss_conf 5699999998--06871305765799986799999999999838999988897867777------888862799974553
Q ss_pred CCCC--------------------HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 0100--------------------01013421232378875544310222111121035322055424000145677766
Q gi|254780217|r 96 SYSL--------------------NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 (347)
Q Consensus 96 ~~~~--------------------~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE 155 (347)
.+.. ..+..+.++.|+|||||+++++++++|++|++||+||++||.||.+||||||||||
T Consensus 78 ~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~mn~~aaNalLK~LE 157 (342)
T PRK06964 78 RPEALAAEAPGAADDAKAADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEALNVAAANALLKTLE 157 (342)
T ss_pred CCCHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHC
T ss_conf 40021022333210010111222101235655645499999999997007545884499982778738999999999723
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
Q ss_conf 30343416765044335730252036988647999899999999727888967899999975989789998814577999
Q gi|254780217|r 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 (347)
Q Consensus 156 EPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~ 235 (347)
|||++|+|||+|+++++|||||+||||.++|++++.+++..||.+.+.. + ...+..++.|+|+.|+.+.+.+....
T Consensus 158 EPp~~~~~iL~~~~~~~llpTI~SRcq~~~~~~~~~~~~~~~L~~~~v~--~--a~~lla~a~G~p~~Al~l~~~~~~~~ 233 (342)
T PRK06964 158 EPPPGVVFLLVSARIDRLLPTILSRCRQWPMTVPAPEAAAAWLAAQGVA--D--ANALLAEAGGAPLAALALASDENRPL 233 (342)
T ss_pred CCCCCEEEEEEECCHHHCCHHHHHCCEEECCCCCCHHHHHHHHHHCCCC--C--HHHHHHHCCCCHHHHHHHHCCCHHHH
T ss_conf 7987848999869925483688767643028995999999999873986--3--99999880999899998716735999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHH------------HHHH
Q ss_conf 999999840323432289999999998316769999999999999999999986541---0045------------4899
Q gi|254780217|r 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS---GQLE------------EADQ 300 (347)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~------------~~~~ 300 (347)
++.++..+...... .....++.+.+..-.. +++++..|+.......... .... ....
T Consensus 234 ~~~~l~~L~~~~~~----~~~~~ae~~~k~~~~~----~l~~l~~w~~DlL~~~~~~~~~~~~~~~~~l~~lA~~~~~~~ 305 (342)
T PRK06964 234 RDWTLGQLAAGAAC----DAFACGETLQKLPVPA----VLGWLQRWLYDLLAQRLAGAPRYFPAQRAALARCAAAADANA 305 (342)
T ss_pred HHHHHHHHHCCCCC----CHHHHHHHHHCCCHHH----HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHH
T ss_conf 99999998643325----7999999984478999----999999999999999825981126779999999885089999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999987622799799999999999727
Q gi|254780217|r 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 (347)
Q Consensus 301 l~~~~~~i~~~~~~~~~~NLd~~~~ll~ll~~l~~~ 336 (347)
+....+.+.+.. ..-..|+|++.++..++.++++.
T Consensus 306 L~~~~~~l~~~r-~~l~~nvN~~L~lE~LlL~~~e~ 340 (342)
T PRK06964 306 FARFAKAVTRQR-AVENHPLAARLVFEELFLGYREL 340 (342)
T ss_pred HHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999-98629987799999999999997
No 31
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=100.00 E-value=0 Score=443.24 Aligned_cols=198 Identities=36% Similarity=0.500 Sum_probs=184.2
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCH
Q ss_conf 99999999828898166311798988899999999998177998864312101267886799996789875453001000
Q gi|254780217|r 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLN 100 (347)
Q Consensus 21 ~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~ 100 (347)
++.|.++++++|+||||||+||+|+||.++|++||++|+|.+.....|||.|.+ |++|.+|+|||+++|.+...
T Consensus 1 ~~~l~~~~~~~r~~HA~LF~G~~G~Gk~~~A~~~A~~l~C~~~~~~~~Cg~C~~------C~~~~~G~HPD~~~~~P~~~ 74 (216)
T TIGR00678 1 WQQLQRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEPRGGGEPCGECHS------CRLIEAGNHPDLHRLEPEGQ 74 (216)
T ss_pred CHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------HHHHHHCCCCCEEEEEEECC
T ss_conf 956788986067886125444888748999999999980778577888885888------99987079982378742347
Q ss_pred HHC---------------CCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 101---------------34212323788755443102221111210353220554240001456777663034341676
Q gi|254780217|r 101 PKT---------------GKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 (347)
Q Consensus 101 ~k~---------------~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiL 165 (347)
.+. .+.++.|+|||||+++++++++|.+|+||||||++||+||.+|||||||||||||++|+|||
T Consensus 75 ~~~~~~de~~~~~~g~a~~~~~~~Ik~dq~R~l~~~~~~~~~~~~~rVviI~~Ae~mn~~AANALLKtLEEPp~~t~fiL 154 (216)
T TIGR00678 75 SKSLTADEAAEGEEGSAKRRALPQIKVDQVRELVEFLSLTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFIL 154 (216)
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHEECCCCCEEEEE
T ss_conf 77777645897625642113678787278999999986064214751799767323258989865101012798707988
Q ss_pred EECCC--CCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCH-HHHHHHHHHCCCCHHHH
Q ss_conf 50443--3573025203698864799989999999972788896-78999999759897899
Q gi|254780217|r 166 ISHAS--PTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWD-SKRDFVKIAAYGSVARA 224 (347)
Q Consensus 166 it~~~--~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~-~~~~~~~~~s~Gs~~~A 224 (347)
+|+++ .+|||||+||||.++|.+|+.+++.+||.+.+..-.. +...+++.++.|+|++|
T Consensus 155 ~~~~~DP~~lLpTI~SRCq~~~f~~l~~~~~~~~L~~~g~~~~~~~~a~~~~~~~~G~p~~a 216 (216)
T TIGR00678 155 ITHSPDPERLLPTIRSRCQVLPFPPLSEEALLQWLIEQGISENVPEAAELLLALAGGSPGRA 216 (216)
T ss_pred ECCCCCHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 50888843322111032015862599889999999970878780689999999846851239
No 32
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=412.13 Aligned_cols=301 Identities=23% Similarity=0.262 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~ 96 (347)
|+.+++.|.+++.+||+||||||+||+|+||+++|++||++++|.... +|+.| .+|+.+..|+|||+.++.
T Consensus 9 q~~~~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~---~~~~~------~~~~~i~~g~HPD~~~i~ 79 (319)
T PRK08769 9 QQRAFDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPD---PALAQ------RTRQLIAAGTHPDLQLVS 79 (319)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC---CCCCC------HHHHHHHCCCCCCEEEEE
T ss_conf 689999999999769942068758999878999999999998379979---76543------388999668998968775
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 (347)
Q Consensus 97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T 176 (347)
...++++++.++.|+|||||+++++++++|.+|++||+|||+||.||.+|+|||||||||||++|+|||+|+++++||||
T Consensus 80 ~~~~~~~~k~k~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEPp~~~~~iL~~~~~~~ll~T 159 (319)
T PRK08769 80 FIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEPSPGRYLWLISAQPARLPAT 159 (319)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHH
T ss_conf 34444543112348699999999996137202795699980667528999999999822799884899986993658247
Q ss_pred HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 52036988647999899999999727888967899999975989789998814577999999999840323432289999
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQ 256 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 256 (347)
|+||||.+.|++++.+++..||...+. ++.....+...+.|+|+.|+.+++++....++.+...+....... ....
T Consensus 160 I~SRCq~~~~~~p~~~~~~~~L~~~g~--~~~~a~~~l~~a~g~p~~A~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~l 235 (319)
T PRK08769 160 IRSRCQRLEFKLPPAHEALAWLLSQGV--SERAAQEALDAARGHPGLAAQWLREDGLAVRRAVAQDLEQIASGR--AGAV 235 (319)
T ss_pred HHHCCEEECCCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--CHHH
T ss_conf 764850111899699999999997599--918999999982799689999843672778999999999885074--2599
Q ss_pred HHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99999831676999-99999999999999999865410045489999999999999998762279979999999999972
Q gi|254780217|r 257 QIADELLSQDQKIA-FDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 (347)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~NLd~~~~ll~ll~~l~~ 335 (347)
.+++.+..+..... +....++. .. ..............+...++.+.+ .+.....|++++..+.++|..+++
T Consensus 236 ~~aq~w~~d~~~~~~l~~~~~l~-----~~-~~~~~~~~~~~l~~L~~~l~~~~~-~r~l~~~nvn~~L~le~Lli~~re 308 (319)
T PRK08769 236 DVAQRWTNDGQADQRLRHAADLA-----LA-QASAGLTDPSRLHKLATWFDAANR-TRDLLRTTVRADLAVTELLLAWRE 308 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HH-HHHHCCCCHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999876024578888644044-----42-111116882889999999999999-999853887288999999999997
Q ss_pred HH
Q ss_conf 78
Q gi|254780217|r 336 CN 337 (347)
Q Consensus 336 ~~ 337 (347)
..
T Consensus 309 ~~ 310 (319)
T PRK08769 309 GE 310 (319)
T ss_pred HC
T ss_conf 44
No 33
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=410.16 Aligned_cols=301 Identities=20% Similarity=0.235 Sum_probs=231.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~ 96 (347)
++..++.|.+++.+||+||||||+||+|+||.++|+.||++++|.... ..|||.|.+ |+.+.+|+|||++++.
T Consensus 8 l~~~~~~l~~~~~~~rl~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~-~~~Cg~C~s------C~l~~~g~HPD~~~i~ 80 (319)
T PRK06090 8 LVPVWQNWKSGLDAERIPGALLLQSDEGLGVESLVELFSHALLCQNYQ-SEACGFCHS------CELMKSGNHPDLHVIK 80 (319)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC-CCCCCCCHH------HHHHHCCCCCCCEEEE
T ss_conf 379999999999869963067667999857999999999998089999-998877877------9998758999823661
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 (347)
Q Consensus 97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T 176 (347)
++ +.++.|+||+||+++++++.+|..|++||+||++||.||.+|+|||||||||||++|+|||+|+++++|+||
T Consensus 81 pe------~~~k~I~vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~ll~T 154 (319)
T PRK06090 81 PE------KEGKSITVEQIRQCNRLAQESSQLGGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPT 154 (319)
T ss_pred CC------CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCC
T ss_conf 23------356768799999999997545210693699981444349999999999842899883899876851208641
Q ss_pred HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCCHHHH
Q ss_conf 520369886479998999999997278889678999999759897899988145779999999998403-2343228999
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI-PRQEYALQKM 255 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 255 (347)
|+||||++.|++|+.++..+||.+.+...+ ..+..++.|+|..|+.+++++..+.+..+...+.. ..... ...
T Consensus 155 I~SRCq~~~l~~p~~~~~~~WL~~q~~~~~----~~aL~l~~g~Pl~a~~~l~~~~~~~~~~l~~~l~~~~~~~~--~~~ 228 (319)
T PRK06090 155 IVSRCQQWVVTPPSTDQAMQWLKGQGISVP----AYALKLNMGSPLKTLAMMKEGELEEYHKLERQLVDALSGPV--SDV 228 (319)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHCCCCH----HHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC--CHH
T ss_conf 876144502899599999999988487557----99998849994999998638689999999999999984788--419
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHC-----CHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHH
Q ss_conf 9999998316769999999999999999999986--5410-----0454899999999999999987622-799799999
Q gi|254780217|r 256 QQIADELLSQDQKIAFDFLIEFILKEICKSAKAA--ALSG-----QLEEADQIAQIYFSLVKRVHAFSMY-NLDRRQMIF 327 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~-----~~~~~~~l~~~~~~i~~~~~~~~~~-NLd~~~~ll 327 (347)
..+...+.. +....+.++..++.+.+....... .... ..-....+.....++.+..+..... ++|+..++.
T Consensus 229 ~~~~~~~~~-~~~~~L~Wl~~lL~Da~K~~~gi~~~~~~~~~~~l~~l~~~~L~~~~~~l~~~r~qL~~~~~lN~ELll~ 307 (319)
T PRK06090 229 LKCASLIAA-DPLTALSWLWLLLTDAQKAHFGVQNEYILPGSAALGPFTYSGLYASTAKLLELKEQLQQFSGLNTELLIM 307 (319)
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 999887360-5777899999999999999860521066667999984189999999999999999997188726999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999997278
Q gi|254780217|r 328 HLLSKARECN 337 (347)
Q Consensus 328 ~ll~~l~~~~ 337 (347)
+.+.+.+++.
T Consensus 308 ~~Ll~~~~~~ 317 (319)
T PRK06090 308 NWLIESREAL 317 (319)
T ss_pred HHHHHHHHHH
T ss_conf 9999987874
No 34
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=397.58 Aligned_cols=299 Identities=24% Similarity=0.302 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC-CCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEE
Q ss_conf 29999999999982889816631179898889999999999817799-88643121012678867999967898754530
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD-FSKAPVRMCNPDPCSPFVKQMASHALHDFLYL 95 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~-~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i 95 (347)
|+..|+.|... ..|+||||||+||.|+||.++|+.||+.+||... .+..|||.|.+ |+++.+|+|||++++
T Consensus 6 ~~~~w~~l~~~--~~rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~s------C~~~~~g~HPD~~~i 77 (325)
T PRK08699 6 HQEQWRQIAEH--WERRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMS------CHLFGQGSHPDFYEI 77 (325)
T ss_pred CHHHHHHHHHH--CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHH------HHHHHCCCCCCEEEE
T ss_conf 57999999983--4450117975799997899999999999828999888998988888------999865999996885
Q ss_pred CCCCHH-HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 010001-0134212323788755443102221111210353220554240001456777663034341676504433573
Q gi|254780217|r 96 SYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 (347)
Q Consensus 96 ~~~~~~-k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il 174 (347)
.+..++ +.++...+|+||+||+++++++++|+.|++||+||++||.||.+|+|||||||||||++|+|||+|+++++||
T Consensus 78 ~p~~~~~~~g~~~~~I~idqiR~l~~~~~~~~~~~~~kV~ii~~ae~mn~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll 157 (325)
T PRK08699 78 TPLADEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADKVL 157 (325)
T ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCC
T ss_conf 13445300166556676999999999971086568946999857777589999999998417888848999879846462
Q ss_pred HHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 02520369886479998999999997278889678999999759897899988145779999999998403234322899
Q gi|254780217|r 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQK 254 (347)
Q Consensus 175 ~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~ 254 (347)
|||+||||.+.|++++.+++..||.+.+....+ .....+.|+|--+ .+.+....+..+++.+.... ...
T Consensus 158 pTI~SRc~~~~~~~p~~~~~~~~L~~~gv~~~~----~~La~~~gapl~~---~~~~~~~~r~~ll~~L~~~~----~~~ 226 (325)
T PRK08699 158 PTIKSRCRKMVLPAPSHEEALAYLRERGVAEPE----ERLAFHSGAPLFD---EEDELRALRAKLLDILAEPR----LLK 226 (325)
T ss_pred CHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHH----HHHHHCCCCCHHH---HCCHHHHHHHHHHHHHHCCC----CCC
T ss_conf 339864542108995999999999974897678----9997659981123---17436999999999972644----055
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHHH------------HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999998316769999999999999999999986541---00454------------8999999999999999876227
Q gi|254780217|r 255 MQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS---GQLEE------------ADQIAQIYFSLVKRVHAFSMYN 319 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~------------~~~l~~~~~~i~~~~~~~~~~N 319 (347)
...++..+.+.. .....+++++..|+.......... +.... ...+....+.+ ...+.....|
T Consensus 227 ~l~~a~~~~k~~--~~l~~~l~wlq~wl~DL~~~~~~~~~~y~~d~~~~L~~lA~~~~~~~L~~~~~~l-~~~~r~~~~n 303 (325)
T PRK08699 227 ILDYAALFDKEK--LPLAVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQTASGFRPRNVFAAEDML-KQLAPYGFHT 303 (325)
T ss_pred HHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHCCCC
T ss_conf 999999987565--8489999999999999999982698543876899999998708999999999999-9999854599
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 997999999999997278
Q gi|254780217|r 320 LDRRQMIFHLLSKARECN 337 (347)
Q Consensus 320 Ld~~~~ll~ll~~l~~~~ 337 (347)
+|++..+.+++.++.+..
T Consensus 304 lN~~L~lE~LLl~y~~l~ 321 (325)
T PRK08699 304 LNVKMQIEHLLINYLELK 321 (325)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 878999999999999887
No 35
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=0 Score=394.56 Aligned_cols=207 Identities=28% Similarity=0.354 Sum_probs=177.8
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCC
Q ss_conf 56561092999999999998288981663117989888999999999981779988643121012678867999967898
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~h 89 (347)
-|++|+||+.+++.|.+++.++|+||||||+||+|+||+++|+.||+.|+|.. +|+.|.. | ++.+++|
T Consensus 2 ~F~~iiGq~~~~~~L~~ai~~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~-----~~~~~~~------~-ri~~~nH 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIEQNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQG-----SPSKNIR------R-RLEEGNH 69 (314)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCCCCHH------H-HHHCCCC
T ss_conf 83312594999999999998599674487789998329999999999985789-----9997665------5-8751899
Q ss_pred CCEEEECCCCHHH--------------CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 7545300100010--------------13421232378875544310222111121035322055424000145677766
Q gi|254780217|r 90 HDFLYLSYSLNPK--------------TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 (347)
Q Consensus 90 pd~~~i~~~~~~k--------------~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE 155 (347)
||++++.+.+... ..+....|+|||||++.+|++++|++|++||+|||+||.||.+|+||||||||
T Consensus 70 PDl~~i~P~~~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLE 149 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLE 149 (314)
T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHC
T ss_conf 97788605620034545577898765302687778799999999997318856884799988978719999999998614
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCC-CHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 30343416765044335730252036988647999899999999727888-967899999975989789998814
Q gi|254780217|r 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMG-WDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 156 EPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~-~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
||| +++|||+|+++++|||||+||||.++|+|++.+++.++|++.+... .......+..+|+||||.|+...+
T Consensus 150 EP~-~~~fILit~~~~~lLpTI~SRCQ~i~F~~l~~~~i~~~L~~~~~~~~~~~~~~~l~~~A~GspG~a~~~~~ 223 (314)
T PRK07399 150 EPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDNINEILDHPELLALAQGSPGAAIANIE 223 (314)
T ss_pred CCC-CCEEEEEECCHHHCCHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 787-85699997993649146641875633899899999999997166433102789999881799799999999
No 36
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=9.8e-45 Score=379.86 Aligned_cols=208 Identities=23% Similarity=0.346 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~ 96 (347)
|+.+++.|.+++++||+||||||+| |+||..+|++||+.++|....+..||+.|.+ |+++.+|+|||++++.
T Consensus 7 Qp~i~~~l~~~i~~~rl~HAyLf~G--~~Gk~~~A~~~A~~l~C~~~~~~~pCg~C~~------C~~i~~~~hpDv~~i~ 78 (290)
T PRK07276 7 QPKLFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEDVLPCGHCRS------CRLIEQGDFSDVTVIE 78 (290)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH------HHHHHCCCCCCCEEEC
T ss_conf 8999999999998499650542169--8687999999999981899999898988999------9998769998713771
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 (347)
Q Consensus 97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T 176 (347)
. .++.|+||+||++.++++.+|++|++||+|||+||.||.+|||||||+|||||++|+|||+|+++++||||
T Consensus 79 ~--------~~~~I~vd~IR~l~~~~~~~~~~g~~KV~II~~Ad~mt~~AaNaLLK~LEEPp~~t~~iLlt~~~~~lLpT 150 (290)
T PRK07276 79 P--------QGQVIKTDTIRELTANFSQSGYEGKRQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPT 150 (290)
T ss_pred C--------CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCHH
T ss_conf 6--------77757688999999998445613782799977656529999999999703898883799887992549378
Q ss_pred HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH-HHHHHHHHHHHC
Q ss_conf 52036988647999899999999727888967899999975989789998814577-999999999840
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC-DKIISSYIDLIH 244 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~-~~~~~~~~~~l~ 244 (347)
|+||||.++| |...+.+.+.+.+.+. ++..++.++.+++ ++++|+.+..++. .+.......++.
T Consensus 151 I~SRCQ~i~f-p~~~~~l~~~l~~~gi--~~~~a~~la~~~~-~~~~a~~l~~~~~f~~~~~~~~~~~~ 215 (290)
T PRK07276 151 IKSRTQIFHF-PKNEAYLYQLLEEKGL--LKTQAKLLAKLAQ-STSEAEKLAQNSKFLELIDQAERFVS 215 (290)
T ss_pred HHHCCCCCCC-CCCHHHHHHHHHHCCC--CHHHHHHHHHHHC-CHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 8736601028-9967999999998699--8679999999965-99999998725489999999999999
No 37
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=4e-41 Score=350.75 Aligned_cols=218 Identities=21% Similarity=0.321 Sum_probs=176.1
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC-CHHHCCCCCCCHHH
Q ss_conf 65555875656109299999999999828898166311798988899999999998177998864-31210126788679
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA-PVRMCNPDPCSPFV 81 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~-~~~~~~~~~~~~~~ 81 (347)
..||||++|++++||+++++.|.++++++++|| +|||||||+||+|+|+++|+.++|....... .|+.| +.+....
T Consensus 6 veKYRP~~~~dvvGq~~i~~~L~~~~~~~~~ph-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nas--d~~~~~~ 82 (337)
T PRK12402 6 TEKYRPSLFEDILGQESVVDHLSALAASGNLPH-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVS--DFFDQGK 82 (337)
T ss_pred CCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCC--CCCCCCC
T ss_conf 214188979980397999999999997799876-9888929848999999999996799756783331165--3113564
Q ss_pred HHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHH-HHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99967898754530010001013421232378875544-31022211112103532205542400014567776630343
Q gi|254780217|r 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR-YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 82 ~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~-~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
..+. .++.+..+.. .. .......+|.+|+++ ++.+++|..++|||+|||+||.||.+|||||||+|||||++
T Consensus 83 ~~i~--~~~~~~~~~~---~~--~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~~~ 155 (337)
T PRK12402 83 KYLV--EDPRFAHFYD---DP--KRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYSET 155 (337)
T ss_pred CEEE--CCCCHHHHHC---CH--HHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 0010--1664234420---15--332773789999999998614887788049997071317999999999887408876
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHH----HHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 416765044335730252036988647999899999999----7278889678999999759897899988145
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~----~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
++|||+|+++++++|||+|||+.|+|++++.+++.+.|. +++.+.+++.++.++..|+|++|+|+++++.
T Consensus 156 ~~fIl~t~~~~~ii~tI~SRC~~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~~l~~ia~~s~GdlR~ain~Lq~ 229 (337)
T PRK12402 156 CRFIFSTTQPSKLIPPIRSRCLPLFFRPVPDDEIRSVLESIAAAEGVEISDDGLDLIAYYAEGDLRKAILTLQL 229 (337)
T ss_pred EEEEEECCCCCCCCHHHHHHCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 69987238644475247762445435898999999999999998499989999999999869989999999999
No 38
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=7.4e-41 Score=348.59 Aligned_cols=174 Identities=20% Similarity=0.241 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~ 96 (347)
+.++|+.|.+++++||+||||||+||+|+||+++|+.||+.|||...+ | .|.++.+++|||++++.
T Consensus 2 ~~~~We~L~~~i~~~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p----~----------~~~~i~~~~HPD~~~i~ 67 (290)
T PRK05917 2 ENAAWEALLQRVRDQKVPSAILLHGQDLSNLSQYAYELASLILLESSP----E----------AQYKISQKIHPDIHEFF 67 (290)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC----C----------HHHHHHHCCCCCEEEEC
T ss_conf 854999999999839966068768999865999999999998578996----1----------68898746899859961
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 (347)
Q Consensus 97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T 176 (347)
+. ..++.++||+||++.++++++|++|+|||+|||+||.||.+|||||||||||||++|+|||+|+++++||||
T Consensus 68 pe------~k~~~~~Id~iR~l~~~i~~~p~~g~~KV~IId~Ad~Mn~~AaNALLKtLEEPP~~tvfILit~~~~~lLpT 141 (290)
T PRK05917 68 PE------GKGRLHSIETPRAIKKQIWIHPYEANYKIYIIHEADRMTLDAISAFLKVLEDPPKHSVIILTSAKPQRLPPT 141 (290)
T ss_pred CC------CCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHH
T ss_conf 57------778878678999999996418646882699975677638999999999734798785999986992548237
Q ss_pred HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCH
Q ss_conf 520369886479998999999997278889678999999759897
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV 221 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~ 221 (347)
|+||||.++|+... .....++....+..+++|..
T Consensus 142 I~SRCQ~I~i~~~e-----------~~~i~~e~~~~l~~~a~g~~ 175 (290)
T PRK05917 142 IRSRSLSIHIPGEE-----------KTLPSKEDIAYLIRYAQGKE 175 (290)
T ss_pred HHHCCCEEECCCCC-----------CCCCCHHHHHHHHHHHCCCH
T ss_conf 76335116777620-----------13478899999999846973
No 39
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=4.3e-39 Score=334.40 Aligned_cols=200 Identities=16% Similarity=0.251 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCC-CEEEE
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987-54530
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH-DFLYL 95 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hp-d~~~i 95 (347)
.+++.+.|.++++++|+||||||+||+|+||+++|+.||+.++|........| .|| |+.++
T Consensus 3 ~e~iv~~L~nai~~~klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~------------------~~~~~~~~i 64 (303)
T PRK07132 3 DNNIIKSLDNLAKQNKISHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLNLE------------------ELPYNIFLF 64 (303)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC------------------CCCCCCEEE
T ss_conf 03899999999984997616886789986799999999999729987888754------------------565323041
Q ss_pred CCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 01000101342123237887554431022211-11210353220554240001456777663034341676504433573
Q gi|254780217|r 96 SYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN-TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 (347)
Q Consensus 96 ~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~-~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il 174 (347)
+. ....|+++++|+.++.+..+|. .|++||+|||+||.||.+|+|||||||||||++|+|||+|+++++||
T Consensus 65 d~--------~~~~i~~~~i~~~i~~~~~~~~~~~~~Kv~IIdea~~lt~~A~NaLLKtLEEPp~~~~fil~t~~~~~il 136 (303)
T PRK07132 65 DI--------FDEDLSKEEFLSAIEKFSFSSFVSNQKKILIIKNIEKTSNSSLNALLKTIEEPSKNTYFLLTTKNINKVI 136 (303)
T ss_pred CC--------CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCHHHCC
T ss_conf 33--------2220016889999999973665568706999816553399999999987038986848999728824383
Q ss_pred HHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 02520369886479998999999997278889678999999759897899988145779999999998403
Q gi|254780217|r 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI 245 (347)
Q Consensus 175 ~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~ 245 (347)
|||+||||+|.|+|++.+++.++|.+... .++....++..+. +.++|+.+++.+..+....++..+..
T Consensus 137 ~TI~SRCq~~~f~~~~~~~i~~~l~e~~~--~~e~~~~~a~~~~-n~~~a~~~~~~e~~~~~~~~~~~l~~ 204 (303)
T PRK07132 137 PTIVSRCQVINVKEPDQQKILAKLLSQNK--EKEFEKFYAYIFK-NFEDAIKYISKISENLVKKFIKALNK 204 (303)
T ss_pred HHHHHCCEEEECCCCCHHHHHHHHHHCCC--CCHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77863665663788999999999986477--5278999999974-75889999864239999999999998
No 40
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=2.2e-37 Score=320.64 Aligned_cols=194 Identities=25% Similarity=0.379 Sum_probs=169.1
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 66555587565610929999999999982889816631179898889999999999817799886431210126788679
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~ 81 (347)
-.+||||++|++++||+++.+.|.+.++++++|| +|||||||+||+|+|+.+|+.++|..
T Consensus 6 W~eKYRP~~l~di~g~~~~~~~L~~~i~~~~~ph-lLf~GppG~GKTt~a~~la~~l~~~~------------------- 65 (318)
T PRK00440 6 WVEKYRPRSLDEVVGQEEIVERLKSFVKEKNMPH-LLFAGPPGTGKTTAALALARELYGEY------------------- 65 (318)
T ss_pred HHHCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCC-------------------
T ss_conf 6460198989994196999999999998799866-98889599889999999999976986-------------------
Q ss_pred HHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHH-HHCCCCCCC-CCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 99967898754530010001013421232378875544-310222111-1210353220554240001456777663034
Q gi|254780217|r 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR-YFLSLTANT-GYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 (347)
Q Consensus 82 ~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~-~~~~~~~~~-~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~ 159 (347)
.+.++++++.+ |++ ++|.||+.+ +++..+|.. +++||+|||+||.||.+|||||+|+||+||+
T Consensus 66 ------~~~~~lelnas-d~r--------~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE~~~~ 130 (318)
T PRK00440 66 ------WRENFLELNAS-DER--------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQ 130 (318)
T ss_pred ------CCCCEEEECCC-CCC--------CHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf ------43476895164-566--------717899999999972677899738999868553225567888764310566
Q ss_pred CCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHH----HHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 3416765044335730252036988647999899999999----7278889678999999759897899988145
Q gi|254780217|r 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 160 ~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~----~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
++.|||+|++++++++||+|||+.++|+|++.+++.+.|. .++...+++.+..++..|+|++|+|+++++.
T Consensus 131 ~~~fil~~n~~~kii~~i~SRc~~i~f~~~~~~~i~~~L~~I~~~E~i~~~~~~l~~i~~~s~gdlR~ain~Lq~ 205 (318)
T PRK00440 131 TTRFILSCNYSSKIIDPIQSRCAVFRFSPLPKEAVIERLRYIAKNEGLEITDDALEAIYYVSEGDMRKAINALQA 205 (318)
T ss_pred CCEEEEECCCCCCCCCCHHHHHEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 625886348833376155655101115789999999999999998599989999999998649989999999999
No 41
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=7e-37 Score=316.59 Aligned_cols=183 Identities=20% Similarity=0.260 Sum_probs=151.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCC
Q ss_conf 89816631179898889999999999817799886431210126788679999678987545300100010134212323
Q gi|254780217|r 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVIT 111 (347)
Q Consensus 32 ~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~ 111 (347)
+-|||+|+.|++|+|+..++..||++|+|.. ..+|||.|.+ |+++.+|+|||++.+.. .+..|+
T Consensus 6 n~~halLl~~~~G~~~~~~~~~~~k~LlC~~--~~~PCG~C~s------C~~i~~g~HPD~~~i~p--------e~~sIk 69 (262)
T PRK05818 6 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTK--ANGFCKTCES------CLKILNGKYNDFYLIFD--------QKNPIK 69 (262)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCCCCCCCHH------HHHHHCCCCCCEEEEEC--------CCCCCC
T ss_conf 8985056644877646999999999862289--9999988862------78675589997799716--------645577
Q ss_pred HHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCC
Q ss_conf 78875544310222111-12103532205542400014567776630343416765044335730252036988647999
Q gi|254780217|r 112 VDEIRRIRYFLSLTANT-GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLS 190 (347)
Q Consensus 112 vd~IR~l~~~~~~~~~~-~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~ 190 (347)
+||||++++.+++++.+ |++||+||++||+||.+|||||||+|||||++|+|||+|+++++|||||+|||+.+.+.+..
T Consensus 70 ieqir~li~~l~~~s~e~~g~KV~II~~Ae~Mt~~AANALLKtLEEPp~nt~fIL~t~~~~~LLPTIrSRC~~~~~~~~~ 149 (262)
T PRK05818 70 KEDALSIINKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKE 149 (262)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCHHHHHCCCCCCCCHH
T ss_conf 98999999998211400288489998777874999999999861289878389997388143730888770144666434
Q ss_pred HHHHHHHHHH----HCCCCCHHHH-HHHHHHCCCCHHHHHHHHCC
Q ss_conf 8999999997----2788896789-99999759897899988145
Q gi|254780217|r 191 ENNLYKALEQ----LKIMGWDSKR-DFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 191 ~~~~~~~L~~----~~~~~~~~~~-~~~~~~s~Gs~~~A~~ll~~ 230 (347)
.....+...+ ..+....... +.+...+.||+++++.++++
T Consensus 150 ~~~~~~~~~~~~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~~ 194 (262)
T PRK05818 150 KKVPFKVESNDRYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIET 194 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 667888874088898764101107999988616768889999999
No 42
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.1e-34 Score=295.28 Aligned_cols=201 Identities=36% Similarity=0.488 Sum_probs=174.9
Q ss_pred HHHCCHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCC
Q ss_conf 561092999999999998-2889816631179898889999999999817799886431210126788679999678987
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYC-SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~-~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hp 90 (347)
++++|++.+...+..... .+++||||||+||+|+||+++|.++|+.++|.......+|..| ..|+.+..|+||
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~ 74 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC------RSCKLIPAGNHP 74 (325)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHH------HHHHHHCCCCCC
T ss_conf 96433235899999999865888761003799999789999999999658664334552002------244432025688
Q ss_pred CEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 54530010001013421232378875544310222111121035322055424000145677766303434167650443
Q gi|254780217|r 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 (347)
Q Consensus 91 d~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~ 170 (347)
|++++.++-..+ ..|.+|+||++..+.+.++..|++||+|||+||.||.+|||||||++||||.+|+|||+|+++
T Consensus 75 d~lel~~s~~~~-----~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 75 DFLELNPSDLRK-----IDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred CEEEECCCCCCC-----CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCH
T ss_conf 659977321333-----300699999999860446566772699973203269888876754332488871699974985
Q ss_pred CCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 357302520369886479998999999997278889678999999759897899988145
Q gi|254780217|r 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 171 ~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
++|+|||+|||+.++|+|++......+++ ++....+...+.|..+.+++.++.
T Consensus 150 ~~il~tI~SRc~~i~f~~~~~~~~i~~~e-------~~~l~~i~~~~~gd~r~~i~~lq~ 202 (325)
T COG0470 150 SKILPTIRSRCQRIRFKPPSRLEAIAWLE-------DQGLEEIAAVAEGDARKAINPLQA 202 (325)
T ss_pred HHCHHHHHHHEEEEECCCCCHHHHHHHHH-------HHHHHHHHHHHCCHHHHHCCHHHH
T ss_conf 55647877560788767741889999850-------757999998704068873489999
No 43
>KOG0989 consensus
Probab=100.00 E-value=4.5e-34 Score=293.98 Aligned_cols=196 Identities=23% Similarity=0.368 Sum_probs=162.2
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHH
Q ss_conf 65555875656109299999999999828898166311798988899999999998177998864312101267886799
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK 82 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~ 82 (347)
-.||||++|++++||+.+++.|++++..+.+|| ||||||||+|||++|++||+.|+|.+- .||+.|..+.++..
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~-~LFyGPpGTGKTStalafar~L~~~~~---~~~rvl~lnaSder-- 100 (346)
T KOG0989 27 TEKYRPKTFDELAGQEHVVQVLKNALLRRILPH-YLFYGPPGTGKTSTALAFARALNCEQL---FPCRVLELNASDER-- 100 (346)
T ss_pred HHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCC---CCCCHHHHCCCCCC--
T ss_conf 787478737765015999999999986068860-786689998676899999998557423---55542431366001--
Q ss_pred HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHH-HHHHCCCC--------CCCCCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99678987545300100010134212323788755-44310222--------1111210353220554240001456777
Q gi|254780217|r 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLT--------ANTGYWRVIMIDPVDGMNRNAANALLKS 153 (347)
Q Consensus 83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~-l~~~~~~~--------~~~~~~Ki~IId~ad~ln~~AaNALLK~ 153 (347)
| |+ -+|+ +.+|..++ .....+||+|+|+||.|+.+||+||+|+
T Consensus 101 ----G----------------------is--vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~ 152 (346)
T KOG0989 101 ----G----------------------IS--VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRT 152 (346)
T ss_pred ----C----------------------CC--CHHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHH
T ss_conf ----4----------------------31--0066523799875025565678898632899741645309999999999
Q ss_pred HHHCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 663034341676504433573025203698864799989999999----9727888967899999975989789998814
Q gi|254780217|r 154 LEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 154 LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
+|.++..|+|||||++.++|+.+|.||||+|+|+++..+++.+.| ++++.++++++.+.++..|+|+.|+|+.+++
T Consensus 153 mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989 153 MEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HHCCCCCEEEEEECCCHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 86254665999973885647728774677712887644789999999988858997878999999973872899999999
Q ss_pred CCH
Q ss_conf 577
Q gi|254780217|r 230 YDC 232 (347)
Q Consensus 230 ~~~ 232 (347)
+-.
T Consensus 233 sls 235 (346)
T KOG0989 233 SLS 235 (346)
T ss_pred HHH
T ss_conf 861
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.97 E-value=1.1e-28 Score=250.63 Aligned_cols=185 Identities=23% Similarity=0.322 Sum_probs=155.6
Q ss_pred CCCCCCCCCHHHHCCHHHHHH---HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 665555875656109299999---99999982889816631179898889999999999817799886431210126788
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEK---FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~---~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~ 78 (347)
||.+|||++|++++||++++. .|.+.++++++|| +|||||||+||||+|+.+|+.+-|
T Consensus 3 LAer~RP~~lde~vGQ~hllg~~~~L~~~i~~~~~~s-~Il~GPPG~GKTTlA~iiA~~~~~------------------ 63 (417)
T PRK13342 3 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSS-MILWGPPGTGKTTLARIIAGATDA------------------ 63 (417)
T ss_pred CHHHHCCCCHHHHCCCHHHHCCCHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCC------------------
T ss_conf 7164499988885798776089719999997699975-998896999899999999998689------------------
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 67999967898754530010001013421232378875544310222111121035322055424000145677766303
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp 158 (347)
.++.++.. .-+|++||++++..... ..++..|++|||+|+||+..|++||+.+|+
T Consensus 64 ------------~f~~lnA~----------~~gv~dir~ii~~a~~~-~~~~~tilfiDEIHRfnK~QQD~LLp~vE~-- 118 (417)
T PRK13342 64 ------------EFEALSAV----------TSGVKDLREVIEEAKQS-RLGRRTILFIDEIHRFNKAQQDALLPHVED-- 118 (417)
T ss_pred ------------CEEEEECC----------CCCHHHHHHHHHHHHHH-HCCCCEEEEEECHHHCCHHHHHHHHHHHHC--
T ss_conf ------------88996141----------03889999999998863-148965999978200588999999875112--
Q ss_pred CCCCEEEE-ECCCC-CCCHHHHCEEEEEECCCCCHHHHHHHHHHH---------CCCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 43416765-04433-573025203698864799989999999972---------78889678999999759897899988
Q gi|254780217|r 159 QKVLFILI-SHASP-TILSTIRSRCLSIKFNSLSENNLYKALEQL---------KIMGWDSKRDFVKIAAYGSVARAIKI 227 (347)
Q Consensus 159 ~~t~fiLi-t~~~~-~il~TI~SRc~~i~f~~l~~~~~~~~L~~~---------~~~~~~~~~~~~~~~s~Gs~~~A~~l 227 (347)
...+||.. |.||. .|.++|+|||+.|.|+||+.+++.++|... ...++++++++++..|+|+.|.|+++
T Consensus 119 g~iiLIgATTENP~f~in~aLlSRc~vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~ 198 (417)
T PRK13342 119 GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNL 198 (417)
T ss_pred CCEEEEEECCCCCHHHCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 65699974157922534898985657002058999999999999998774337887769999999998149859999999
Q ss_pred HCC
Q ss_conf 145
Q gi|254780217|r 228 LHY 230 (347)
Q Consensus 228 l~~ 230 (347)
++.
T Consensus 199 LE~ 201 (417)
T PRK13342 199 LEL 201 (417)
T ss_pred HHH
T ss_conf 999
No 45
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=3.9e-29 Score=254.21 Aligned_cols=151 Identities=25% Similarity=0.315 Sum_probs=121.4
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCH
Q ss_conf 99999999828898166311798988899999999998177998864312101267886799996789875453001000
Q gi|254780217|r 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLN 100 (347)
Q Consensus 21 ~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~ 100 (347)
++.|.+.++.+++.|||||.|..----..-|..|+..++++.+.+ -..+||+..+.+.-
T Consensus 2 ie~L~n~lknnKlsns~l~~~~N~~~~l~~~~~fi~~~~~~~~~~--------------------le~~pd~~~i~~~~- 60 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIP--------------------LENNPDYHFIARET- 60 (263)
T ss_pred HHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC--------------------CCCCCCHHHHHHHC-
T ss_conf 578988874132446664307886799999999999998626865--------------------23583288874203-
Q ss_pred HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCE
Q ss_conf 10134212323788755443102221111210353220554240001456777663034341676504433573025203
Q gi|254780217|r 101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSR 180 (347)
Q Consensus 101 ~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SR 180 (347)
.++...++|+|||||++..|+++||..|++||+|||+||.||.+|||||||+|||||++|+|||+|++++.||||||||
T Consensus 61 -~~~sn~KnI~IdQIR~L~~fl~~ts~~s~~KV~IId~Ae~mn~~AaNALLK~LEEPP~nt~iiLiT~~~~~LLpTIrSR 139 (263)
T PRK06581 61 -SATSNAKNISIEQIRKLQDFLNKTSAISGYKVAIIYSADLMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSR 139 (263)
T ss_pred -CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCCHHHHC
T ss_conf -4566567357999999999963475468945999947677498989989987418987828999869824461465434
Q ss_pred EEEEECCCCCHHH
Q ss_conf 6988647999899
Q gi|254780217|r 181 CLSIKFNSLSENN 193 (347)
Q Consensus 181 c~~i~f~~l~~~~ 193 (347)
||.+.|+..-..+
T Consensus 140 Cq~inf~s~~~~~ 152 (263)
T PRK06581 140 CFKINCRSSALHA 152 (263)
T ss_pred CEEEECCCCHHHH
T ss_conf 5787358810444
No 46
>PRK04195 replication factor C large subunit; Provisional
Probab=99.95 E-value=7e-26 Score=228.05 Aligned_cols=186 Identities=25% Similarity=0.345 Sum_probs=151.6
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHH---CCCCCE-EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 655558756561092999999999998---288981-6631179898889999999999817799886431210126788
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYC---SGRMHH-ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~---~~~l~h-a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~ 78 (347)
.+||||++|++|+||+.+++.|.+.++ .|+.+| ++||+||||+||||+|..+|+.+-.
T Consensus 5 veKYRPk~~~divg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~------------------ 66 (403)
T PRK04195 5 VEKYRPKSLSDVVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDYGW------------------ 66 (403)
T ss_pred CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC------------------
T ss_conf 40218998999858899999999999998739965746998893998799999999998499------------------
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCC-CCCC-CCCHHHHHHHHHHCCHH----HHHHHHH
Q ss_conf 6799996789875453001000101342123237887554431022-2111-12103532205542400----0145677
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL-TANT-GYWRVIMIDPVDGMNRN----AANALLK 152 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~-~~~~-~~~Ki~IId~ad~ln~~----AaNALLK 152 (347)
++++++.+ |.. +++.||+++..... .+.. .++|++|+||||.|+.. +..+|++
T Consensus 67 ------------~viElNAS-D~R--------~~~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~~ 125 (403)
T PRK04195 67 ------------EVIELNAS-DQR--------TKDVIERVAGEASTSGSLFGAKRKLILLDEVDGIHGNADRGGVRAILE 125 (403)
T ss_pred ------------CEEEECCC-CCC--------CHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ------------85997710-114--------789999999987606887788734999634344572444799999999
Q ss_pred HHHHCCCCCCEEEEECCCC-CCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 7663034341676504433-573025203698864799989999999----97278889678999999759897899988
Q gi|254780217|r 153 SLEEPPQKVLFILISHASP-TILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 (347)
Q Consensus 153 ~LEEPp~~t~fiLit~~~~-~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~l 227 (347)
++|++ ...|||+|+++. ..+.+|+|||+.++|++++.+++.+.| .+++.++++++++.++..|+|++|.|++.
T Consensus 126 ~ik~s--~~PiIli~Nd~~~~~~~~lrs~c~~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~aL~~Ia~~s~GDlR~aIN~ 203 (403)
T PRK04195 126 IIKKA--KNPIILTANDPYDPSLRPLRNACLMIEFKRLSKRSIVPVLKRICRKEGIECEEEALREIAERSGGDLRSAIND 203 (403)
T ss_pred HHHCC--CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 98548--8708998268455671779976612217994999999999999997699999999999999879739999999
Q ss_pred HC
Q ss_conf 14
Q gi|254780217|r 228 LH 229 (347)
Q Consensus 228 l~ 229 (347)
++
T Consensus 204 LQ 205 (403)
T PRK04195 204 LQ 205 (403)
T ss_pred HH
T ss_conf 99
No 47
>KOG0991 consensus
Probab=99.94 E-value=1.4e-25 Score=225.67 Aligned_cols=239 Identities=23% Similarity=0.335 Sum_probs=184.5
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHH
Q ss_conf 65555875656109299999999999828898166311798988899999999998177998864312101267886799
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK 82 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~ 82 (347)
-.||||+.+.+|+|.++.++.|.-..+.|++|| ++|+||||+||+|.++.+|+.||-..-..
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~-liisGpPG~GKTTsi~~LAr~LLG~~~ke----------------- 79 (333)
T KOG0991 18 VEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPN-LIISGPPGTGKTTSILCLARELLGDSYKE----------------- 79 (333)
T ss_pred HHHHCCHHHHHHHCCHHHHHHHHHHHHCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCHHHHH-----------------
T ss_conf 886085299882177989999999997289986-67527999861648999999983806665-----------------
Q ss_pred HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHH-HHHHCCCCCCC--CCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 99678987545300100010134212323788755-44310222111--1210353220554240001456777663034
Q gi|254780217|r 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANT--GYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 (347)
Q Consensus 83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~-l~~~~~~~~~~--~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~ 159 (347)
.+++++. .|+. +||-||. +..|...+-.. |..||+|+|+||.||..||.||.+|+|=..+
T Consensus 80 --------~vLELNA-SdeR--------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ 142 (333)
T KOG0991 80 --------AVLELNA-SDER--------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSN 142 (333)
T ss_pred --------HHHHCCC-CCCC--------CCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf --------7632057-6554--------6089999999998720348998524899615220206899999999999706
Q ss_pred CCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
Q ss_conf 341676504433573025203698864799989999999----9727888967899999975989789998814577999
Q gi|254780217|r 160 KVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 (347)
Q Consensus 160 ~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~ 235 (347)
.|.|.|.|+...+|..+|.|||-.++|.+++.+++.+.| +.++..+.++.++.+...++|++|+|++-+++.....
T Consensus 143 ttRFalaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~ 222 (333)
T KOG0991 143 TTRFALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGF 222 (333)
T ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 32000001542132226773457653222678999999999998707887711477855441661999999999874054
Q ss_pred H-HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9-99999840323432289999999998316769999999999
Q gi|254780217|r 236 I-SSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEF 277 (347)
Q Consensus 236 ~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
- -...+.+... ..+....+.+........+-...++.+-++
T Consensus 223 g~Vn~enVfKv~-d~PhP~~v~~ml~~~~~~~~~~A~~il~~l 264 (333)
T KOG0991 223 GLVNQENVFKVC-DEPHPLLVKKMLQACLKRNIDEALKILAEL 264 (333)
T ss_pred CCCCHHHHHHCC-CCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 524632310006-999859999999999861299999999999
No 48
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.94 E-value=2.9e-26 Score=231.10 Aligned_cols=183 Identities=19% Similarity=0.260 Sum_probs=143.0
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHC-----CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 66555587565610929999999999982-----8898166311798988899999999998177998864312101267
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCS-----GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~-----~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
+|+++||++|++++||+++...|..++++ +.++| .|||||||+||||+|+.+|+.+.|.-....
T Consensus 14 ~~~~lRP~~l~e~vGQehl~~~l~~~i~a~~~~~~~l~h-~lf~GPPG~GKTTlAriiAk~~~~~~~~~s---------- 82 (234)
T pfam05496 14 VERSLRPRRLDEYIGQEKVKENLKIFIEAAKKRGEALDH-VLLYGPPGLGKTTLANIIANEMGVNIRITS---------- 82 (234)
T ss_pred HHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEEC----------
T ss_conf 785549897666069499999999999988742777662-788789999888999999984087537614----------
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 88679999678987545300100010134212323788755443102221111210353220554240001456777663
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
+ | .+ + .+.+++.+... .+.+.|++||++|++|+..|++||+.+|+
T Consensus 83 ----------~--~---~i-----~---------~~~di~~~l~~------~~~~~ILFIDEIHr~nK~qqd~Llp~vE~ 127 (234)
T pfam05496 83 ----------G--P---AL-----E---------KPGDLAAILTN------LEPGDVLFIDEIHRLNRAVEEILYPAMED 127 (234)
T ss_pred ----------C--H---HH-----H---------HHHHHHHHHHH------CCCCCEEEEECHHHCCHHHHHHCCCCCCC
T ss_conf ----------2--6---66-----4---------38999999984------58998899966543587688744553346
Q ss_pred ----------CCCCC--------CEEEEECCCCCCCHHHHCEEE-EEECCCCCHHHHHHHHHH----HCCCCCHHHHHHH
Q ss_conf ----------03434--------167650443357302520369-886479998999999997----2788896789999
Q gi|254780217|r 157 ----------PPQKV--------LFILISHASPTILSTIRSRCL-SIKFNSLSENNLYKALEQ----LKIMGWDSKRDFV 213 (347)
Q Consensus 157 ----------Pp~~t--------~fiLit~~~~~il~TI~SRc~-~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~ 213 (347)
|+..+ .+|..|+.+.++.+|++|||. .++|.+++.+++.+++.. .+..++++++..+
T Consensus 128 g~i~i~ig~~~~A~~~~~e~P~FtLIgATTe~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~~l~i~i~~eal~~I 207 (234)
T pfam05496 128 FRLDIVIGKGPSARSIRLDLPPFTLVGATTRAGLLTSPLRDRFGIVLRLEFYSVEELEEIVKRSARILGVEIDEEGAAEI 207 (234)
T ss_pred CEEEEEECCCCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 16999963676632465268975998521566647777997621124424689999999999999983999599999999
Q ss_pred HHHCCCCHHHHHHHHCC
Q ss_conf 99759897899988145
Q gi|254780217|r 214 KIAAYGSVARAIKILHY 230 (347)
Q Consensus 214 ~~~s~Gs~~~A~~ll~~ 230 (347)
+..|.|++|.|+++++.
T Consensus 208 A~~s~Gd~R~ALnlLe~ 224 (234)
T pfam05496 208 ARRSRGTPRIANRLLRR 224 (234)
T ss_pred HHHCCCCHHHHHHHHHH
T ss_conf 99779989999899999
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.93 E-value=3.1e-24 Score=214.77 Aligned_cols=183 Identities=23% Similarity=0.324 Sum_probs=155.6
Q ss_pred CCCCCCCCCHHHHCCHHHHHH---HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 665555875656109299999---99999982889816631179898889999999999817799886431210126788
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEK---FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~---~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~ 78 (347)
||.++||+++++++||++.+. .|.+.+.++++|+ .+||||||+||||+|+.+|+..-+
T Consensus 14 LA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~S-mIl~GPPG~GKTTlA~liA~~~~~------------------ 74 (436)
T COG2256 14 LAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHS-MILWGPPGTGKTTLARLIAGTTNA------------------ 74 (436)
T ss_pred HHHHHCCCCHHHHCCHHHHHCCCCHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCC------------------
T ss_conf 6777097778785571866189943899996499860-577789998888999999876177------------------
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 67999967898754530010001013421232378875544310222111121035322055424000145677766303
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP 158 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp 158 (347)
++..++.. .-+|.|+|++.+........|..-|.+||++|++|+..|.+||-.+|.
T Consensus 75 ------------~f~~~sAv----------~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~-- 130 (436)
T COG2256 75 ------------AFEALSAV----------TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN-- 130 (436)
T ss_pred ------------CEEEECCC----------CCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCC--
T ss_conf ------------66995152----------346799999999999987258834998722533374456551033248--
Q ss_pred CCCCEEEE---ECCCC-CCCHHHHCEEEEEECCCCCHHHHHHHHHHH------C-----CCCCHHHHHHHHHHCCCCHHH
Q ss_conf 43416765---04433-573025203698864799989999999972------7-----888967899999975989789
Q gi|254780217|r 159 QKVLFILI---SHASP-TILSTIRSRCLSIKFNSLSENNLYKALEQL------K-----IMGWDSKRDFVKIAAYGSVAR 223 (347)
Q Consensus 159 ~~t~fiLi---t~~~~-~il~TI~SRc~~i~f~~l~~~~~~~~L~~~------~-----~~~~~~~~~~~~~~s~Gs~~~ 223 (347)
..+||| |.||+ .|-|.|+|||+.|.|.|++.+++.+.|+.. + ..+++++.+.++..++|+.|.
T Consensus 131 --G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 131 --GTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred --CEEEEEECCCCCCCEEECHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHH
T ss_conf --868999626789871403888611041565169989999999999865413777655668889999999862861999
Q ss_pred HHHHHC
Q ss_conf 998814
Q gi|254780217|r 224 AIKILH 229 (347)
Q Consensus 224 A~~ll~ 229 (347)
|+++++
T Consensus 209 aLN~LE 214 (436)
T COG2256 209 ALNLLE 214 (436)
T ss_pred HHHHHH
T ss_conf 988999
No 50
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.93 E-value=1.8e-24 Score=216.77 Aligned_cols=183 Identities=21% Similarity=0.275 Sum_probs=152.6
Q ss_pred CCCCCCCCCHHHHCCHHHHHH---HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 665555875656109299999---99999982889816631179898889999999999817799886431210126788
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEK---FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~---~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~ 78 (347)
||.++||++++++|||++++. .|.+.+.++++|. ++||||||+||||+|+.+|+..-+
T Consensus 18 LA~rmRP~~Lde~vGQ~hllg~g~~Lrr~i~~~~~~S-~Il~GPPGtGKTTLA~iIA~~t~~------------------ 78 (726)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGS-LILYGPPGVGKTTLARIIANHTRA------------------ 78 (726)
T ss_pred CHHHHCCCCHHHHCCCHHHCCCCCHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCC------------------
T ss_conf 5686299987773595754289828999997699982-788897999999999999887488------------------
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 67999967898754530010001013421232378875544310222-11112103532205542400014567776630
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT-ANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~-~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP 157 (347)
.+..++. ..-+|.|||++++..... ...|+.-|.+||++|++|+..|.+||-.+|.
T Consensus 79 ------------~F~~lsA----------v~sgvkdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~vE~- 135 (726)
T PRK13341 79 ------------HFSSLNA----------VLAGVKDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN- 135 (726)
T ss_pred ------------CEEEEEC----------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCC-
T ss_conf ------------6799856----------20377999999999999987459965999862542588789987888606-
Q ss_pred CCCCCEEEE---ECCCC-CCCHHHHCEEEEEECCCCCHHHHHHHHHHH-----------CCCCCHHHHHHHHHHCCCCHH
Q ss_conf 343416765---04433-573025203698864799989999999972-----------788896789999997598978
Q gi|254780217|r 158 PQKVLFILI---SHASP-TILSTIRSRCLSIKFNSLSENNLYKALEQL-----------KIMGWDSKRDFVKIAAYGSVA 222 (347)
Q Consensus 158 p~~t~fiLi---t~~~~-~il~TI~SRc~~i~f~~l~~~~~~~~L~~~-----------~~~~~~~~~~~~~~~s~Gs~~ 222 (347)
..++|| |.||. .|-+.++|||+.|.|+|++.+++.+++... ...+++++.+.++..|+|+.|
T Consensus 136 ---G~i~LIGATTENP~F~vn~ALlSR~~vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR 212 (726)
T PRK13341 136 ---GTVTLIGATTENPYFEVNKALVSRSRLFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDAR 212 (726)
T ss_pred ---CEEEEEEECCCCCCEEECHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHH
T ss_conf ---83899970478974364298883234667438999999999999987674325667877598999999997597399
Q ss_pred HHHHHHC
Q ss_conf 9998814
Q gi|254780217|r 223 RAIKILH 229 (347)
Q Consensus 223 ~A~~ll~ 229 (347)
.|++.++
T Consensus 213 ~aLN~LE 219 (726)
T PRK13341 213 SLLNALE 219 (726)
T ss_pred HHHHHHH
T ss_conf 9999999
No 51
>KOG0990 consensus
Probab=99.91 E-value=6.2e-23 Score=204.32 Aligned_cols=196 Identities=20% Similarity=0.287 Sum_probs=157.9
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 66555587565610929999999999982889816631179898889999999999817799886431210126788679
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~ 81 (347)
...||||....+++||++++.++.+....+++|| .|||||||.||+++..+.|+.+-|-.+.+.- .
T Consensus 31 wvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh-~L~YgPPGtGktsti~a~a~~ly~~~~~~~m-------------~ 96 (360)
T KOG0990 31 WVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPH-LLFYGPPGTGKTSTILANARDFYSPHPTTSM-------------L 96 (360)
T ss_pred CCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHCCCCCCHHH-------------H
T ss_conf 7668898225667337721247888626888975-3434899889987366656650589982469-------------9
Q ss_pred HHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHH-HHHHCCCC---CCC--CCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 999678987545300100010134212323788755-44310222---111--121035322055424000145677766
Q gi|254780217|r 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLT---ANT--GYWRVIMIDPVDGMNRNAANALLKSLE 155 (347)
Q Consensus 82 ~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~-l~~~~~~~---~~~--~~~Ki~IId~ad~ln~~AaNALLK~LE 155 (347)
..+.+. ++. ++|-+|+ +..|.+.. .+. ..+|.+|+|+||.|+.+|||||...+|
T Consensus 97 lelnaS------------d~r--------gid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRvie 156 (360)
T KOG0990 97 LELNAS------------DDR--------GIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIE 156 (360)
T ss_pred HHHHCC------------CCC--------CCCCHHHHHHHHHHHCCCEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 986436------------766--------886147888987764164000246761588733413766989999999998
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 303434167650443357302520369886479998999999997----2788896789999997598978999881457
Q gi|254780217|r 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 (347)
Q Consensus 156 EPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~ 231 (347)
....||.|+++++.+.++.|.++|||++|+|.|++..+....+++ ...+...+....+.+++.|+.+.|++.++..
T Consensus 157 k~t~n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~ 236 (360)
T KOG0990 157 KYTANTRFATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSI 236 (360)
T ss_pred HHCCCEEEEEECCCHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 71332379986167644681464104457878887544246788887153110387889999998677799999999999
No 52
>KOG2035 consensus
Probab=99.90 E-value=2.5e-22 Score=199.44 Aligned_cols=217 Identities=21% Similarity=0.278 Sum_probs=162.7
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CCCCHHHCCCCCCCHHHH
Q ss_conf 5555875656109299999999999828898166311798988899999999998177998-864312101267886799
Q gi|254780217|r 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF-SKAPVRMCNPDPCSPFVK 82 (347)
Q Consensus 4 ~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~-~~~~~~~~~~~~~~~~~~ 82 (347)
.||||++++.+.+|++....|+.....+.+|| +|||||.|.||.|-+..+-+.+.--... -.-...... .+.-+
T Consensus 5 dkyrpksl~~l~~~~e~~~~Lksl~~~~d~PH-ll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~----tpS~k 79 (351)
T KOG2035 5 DKYRPKSLDELIYHEELANLLKSLSSTGDFPH-LLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT----TPSKK 79 (351)
T ss_pred HHCCCCHHHHCCCHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCHHHHHHHHHHHHCCCCHHEEEEEEEEE----CCCCC
T ss_conf 65075114303318888899987414577870-78888898872111899999885787245056667886----48886
Q ss_pred HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCC-C----CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 9967898754530010001013421232378875544310222-1----1112103532205542400014567776630
Q gi|254780217|r 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT-A----NTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 (347)
Q Consensus 83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~-~----~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP 157 (347)
+++-..-..-++++..+.+-+..++. - |.++++.+..+ + ..-.+||++|.+||.+|.+||-||.+|+|..
T Consensus 80 klEistvsS~yHlEitPSDaG~~DRv--V---iQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY 154 (351)
T KOG2035 80 KLEISTVSSNYHLEITPSDAGNYDRV--V---IQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKY 154 (351)
T ss_pred EEEEEEECCCCEEEECHHHCCCCCHH--H---HHHHHHHHHHHCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 37999942565177473433751179--9---999999987414133326665489998035765088999999999998
Q ss_pred CCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 34341676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 158 PQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 158 p~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
..++.+||+|+..++|+++|||||..++++.++++++..++ +.++...+++.+.-++..|+|+.|+|+-+++.
T Consensus 155 s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035 155 SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred HCCCEEEEEECCCCCCHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 60716999926743022677622058767899878999999999987334484999999999706439999999999
No 53
>PRK04132 replication factor C small subunit; Provisional
Probab=99.89 E-value=4e-21 Score=189.74 Aligned_cols=156 Identities=16% Similarity=0.110 Sum_probs=113.8
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH-
Q ss_conf 3102221111210353220554240001456777663034341676504433573025203698864799989999999-
Q gi|254780217|r 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL- 198 (347)
Q Consensus 120 ~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L- 198 (347)
.|+...| .|+-..-||++|+.++.+++.|+-.++|--..||.|||.||+.++|+|+|.|||..|+|+||+.+++.+.|
T Consensus 636 ef~~~~~-~~~~s~kii~~a~~~t~d~~~~~~r~~~~~~~~~~~~~SCNYsSKIIePIQSRCavFRF~PL~~e~v~~RL~ 714 (863)
T PRK04132 636 EFIEKVV-DGYVSEKIIKKEYIGYKDVYDITCHNDHSFIANGFVSHNCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLR 714 (863)
T ss_pred HHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCEEEEEECCCCHHHHHHHHH
T ss_conf 9997534-455304435788866577999998778764205617986676040741665562478836899999999999
Q ss_pred ---HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf ---97278889678999999759897899988145779999999998403234322899999999983167699999999
Q gi|254780217|r 199 ---EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 (347)
Q Consensus 199 ---~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (347)
+.++.++.++.++.+...|+|++|+|++.++......-....+........+...++.++.+.....+.......+.
T Consensus 715 ~Ia~~Egv~itedGleAI~~~aeGDMRkAIN~LQsaa~~~~~Vt~d~Vy~v~~~p~P~~I~~~l~~al~g~f~~A~~~L~ 794 (863)
T PRK04132 715 YIAENEGLELTEEGLQAILYVAEGDMRRAINVLQAAAALDTKITDENVFKVASRARPEDIREMMLLALKGNFLKAREKLR 794 (863)
T ss_pred HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99997499767789999999756748999999999986169878889999708999899999999997299899999999
Q ss_pred H
Q ss_conf 9
Q gi|254780217|r 276 E 276 (347)
Q Consensus 276 ~ 276 (347)
+
T Consensus 795 ~ 795 (863)
T PRK04132 795 E 795 (863)
T ss_pred H
T ss_conf 9
No 54
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.84 E-value=2e-20 Score=184.05 Aligned_cols=210 Identities=20% Similarity=0.262 Sum_probs=152.0
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCCCCCHHHCCCC--CCC
Q ss_conf 6655558756561092999999999998288981663117989888999999999981-7799886431210126--788
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPD--PCS 78 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll-c~~~~~~~~~~~~~~~--~~~ 78 (347)
|++|=||.||++|+||++=.+.|+.+++.-+--| .++|||||||||..||..-.+=- |...+-++.-.....| .-+
T Consensus 55 L~Ek~RP~SF~EIiGQe~GI~ALKAALCGPNPQH-VIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDATT~R 133 (532)
T TIGR02902 55 LSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQH-VIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDATTAR 133 (532)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
T ss_conf 7746677763325673556899998606868963-898788696178999999998650875378988668985051036
Q ss_pred HHHHHHHC---CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 67999967---898754530010001013421232378875544310222111121035322055424000145677766
Q gi|254780217|r 79 PFVKQMAS---HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 (347)
Q Consensus 79 ~~~~~i~~---~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE 155 (347)
++.|-|+. ||-.|=+|=..-...-+|-.+. +.-.-.+ ..|+ |.+|||+=.|+.=.=|.|||.||
T Consensus 134 FDERGIADPLIGSVHDPIYQGAGplG~AGIPQP----------K~GAVT~-AHGG--vLFIDEIGELHP~~MNKLLKVLE 200 (532)
T TIGR02902 134 FDERGIADPLIGSVHDPIYQGAGPLGVAGIPQP----------KPGAVTK-AHGG--VLFIDEIGELHPVQMNKLLKVLE 200 (532)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCC-CCCC--EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 021466665677615853337654578855758----------7776320-2586--55121246658243531411330
Q ss_pred HCCCCCCEE-----------------------------E---EECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHH----
Q ss_conf 303434167-----------------------------6---5044335730252036988647999899999999----
Q gi|254780217|r 156 EPPQKVLFI-----------------------------L---ISHASPTILSTIRSRCLSIKFNSLSENNLYKALE---- 199 (347)
Q Consensus 156 EPp~~t~fi-----------------------------L---it~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~---- 199 (347)
+ .-+|+ | ||.+|+-|+|.|||||..+-|++|..+|++++-+
T Consensus 201 D---RKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC~EIFFR~L~~EEi~~iAk~Aae 277 (532)
T TIGR02902 201 D---RKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLKEEIKEIAKNAAE 277 (532)
T ss_pred C---CCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 2---2200001235877786542789972067873401213336987767834650522677168887899999876565
Q ss_pred HHCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 727888967899999975989789998814
Q gi|254780217|r 200 QLKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 200 ~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
+.+..+...+++++...|. |-|+|+|+++
T Consensus 278 KIg~~l~~~Al~~I~~Ya~-nGREAvN~~Q 306 (532)
T TIGR02902 278 KIGLNLEKEALDLIAKYAS-NGREAVNLVQ 306 (532)
T ss_pred HCCCCCCHHHHHHHHHHHC-CCCHHHHHHH
T ss_conf 3046547547999998740-5406778999
No 55
>KOG2028 consensus
Probab=99.82 E-value=2.7e-19 Score=175.05 Aligned_cols=187 Identities=19% Similarity=0.264 Sum_probs=150.7
Q ss_pred CCCCCCCCCHHHHCCHHHHHHH---HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 6655558756561092999999---9999982889816631179898889999999999817799886431210126788
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKF---LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~---L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~ 78 (347)
|++++||+..++.|||++++.+ |.+.+++||+|. ++||||||+||+++|+.+|..-
T Consensus 128 LaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipS-mIlWGppG~GKTtlArlia~ts-------------------- 186 (554)
T KOG2028 128 LAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPS-MILWGPPGTGKTTLARLIASTS-------------------- 186 (554)
T ss_pred HHHHCCCCHHHHHCCHHHHCCCCHHHHHHHHCCCCCC-EEEECCCCCCHHHHHHHHHHHC--------------------
T ss_conf 4554184368775053441483268999987088870-5886699876588999998605--------------------
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 679999678987545300100010134212323788755443102-2211112103532205542400014567776630
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS-LTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~-~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP 157 (347)
. .+.+.+|+.+ .++-++.++|.+.+... +....+++-|.+||++|++|++.|..||-.+|.
T Consensus 187 --------k-~~SyrfvelS--------At~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~- 248 (554)
T KOG2028 187 --------K-KHSYRFVELS--------ATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVEN- 248 (554)
T ss_pred --------C-CCCEEEEEEE--------CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCEECC-
T ss_conf --------7-7742799974--------145661889999999887876524406987377655323211003421306-
Q ss_pred CCCCCEEEE---ECCCC-CCCHHHHCEEEEEECCCCCHHHHHHHHHHH-------------CC----CCCHHHHHHHHHH
Q ss_conf 343416765---04433-573025203698864799989999999972-------------78----8896789999997
Q gi|254780217|r 158 PQKVLFILI---SHASP-TILSTIRSRCLSIKFNSLSENNLYKALEQL-------------KI----MGWDSKRDFVKIA 216 (347)
Q Consensus 158 p~~t~fiLi---t~~~~-~il~TI~SRc~~i~f~~l~~~~~~~~L~~~-------------~~----~~~~~~~~~~~~~ 216 (347)
..++|| |.||+ .+-..+.|||..|.+.+|+.+.+..+|... .+ ...+..+++++.+
T Consensus 249 ---G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~l 325 (554)
T KOG2028 249 ---GDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYL 325 (554)
T ss_pred ---CCEEEEECCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf ---70699853668976011277873160667336888999999999987632102568899983124568899999870
Q ss_pred CCCCHHHHHHHHCC
Q ss_conf 59897899988145
Q gi|254780217|r 217 AYGSVARAIKILHY 230 (347)
Q Consensus 217 s~Gs~~~A~~ll~~ 230 (347)
++|+.+.|++.++-
T Consensus 326 sdGDaR~aLN~Lem 339 (554)
T KOG2028 326 SDGDARAALNALEM 339 (554)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 47318888778999
No 56
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.74 E-value=6.8e-18 Score=163.74 Aligned_cols=204 Identities=23% Similarity=0.289 Sum_probs=137.2
Q ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH---HHHHCCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 555875656109299999999999828898166311798988899999999---99817799886431210126788679
Q gi|254780217|r 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYA---GHVLQNPDFSKAPVRMCNPDPCSPFV 81 (347)
Q Consensus 5 ~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A---~~llc~~~~~~~~~~~~~~~~~~~~~ 81 (347)
=.||++|++||||+.+++.|..=+.|--.-| +|+|||||+||||.|+..- +.+-..+-..+.++-+.....-.=+=
T Consensus 148 lLRP~~f~EiVGQerAI~aLlaK~aSPfPQH-iiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGtTLRWDP 226 (616)
T TIGR02903 148 LLRPRAFSEIVGQERAIKALLAKLASPFPQH-IILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGTTLRWDP 226 (616)
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 6287667643334689999997631888660-785573388478999998762136874476113785751576266774
Q ss_pred HH------------HHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHH
Q ss_conf 99------------967898754530010001013421232378875544310222111121035322055424000145
Q gi|254780217|r 82 KQ------------MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 (347)
Q Consensus 82 ~~------------i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNA 149 (347)
|. |.+|+..|+=+..-+ .+|.| + -|-..|| |.+||++=.|-.==||.
T Consensus 227 REvTNPLLGSVHDPIYQGa~RDLAE~GvP-EPk~G-----------------L-VT~AHGG--vLFIDEIGELD~lLQnK 285 (616)
T TIGR02903 227 REVTNPLLGSVHDPIYQGARRDLAETGVP-EPKLG-----------------L-VTDAHGG--VLFIDEIGELDPLLQNK 285 (616)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHCCCCCC-CCCCC-----------------C-CCCCCCC--EEEEECHHHHHHHHHHH
T ss_conf 10147767762576556764011047879-89898-----------------7-1004775--67650211222787632
Q ss_pred HHHHHHH--------------------------CCCCCCEEEE---ECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 6777663--------------------------0343416765---0443357302520369886479998999999997
Q gi|254780217|r 150 LLKSLEE--------------------------PPQKVLFILI---SHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 (347)
Q Consensus 150 LLK~LEE--------------------------Pp~~t~fiLi---t~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~ 200 (347)
|||.||+ -..=.=|||| |.+|+.|=|.+||||-.+.|.||+++++.+++.+
T Consensus 286 LLKVLEDKrV~F~SsYYDpdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~eINpALRSRCaEvfFePL~p~dI~~Iv~~ 365 (616)
T TIGR02903 286 LLKVLEDKRVEFSSSYYDPDDENVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIKEIVLN 365 (616)
T ss_pred HHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCCHHHHCCCCEEECCCCCHHHHHHHHHH
T ss_conf 44432264366532124875378655888852268882568726615882440512330143132179887899999999
Q ss_pred ----HCCCCCHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf ----2788896789999997598978999881457
Q gi|254780217|r 201 ----LKIMGWDSKRDFVKIAAYGSVARAIKILHYD 231 (347)
Q Consensus 201 ----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~ 231 (347)
.+....+...+.++..+= .-|+|++++...
T Consensus 366 AA~klnv~L~~gV~e~Ia~YTi-eGRkAvnILAD~ 399 (616)
T TIGR02903 366 AAEKLNVKLAEGVEELIARYTI-EGRKAVNILADV 399 (616)
T ss_pred HHHHCCCCCCCCHHHHHHHCCC-CCHHHHHHHHHH
T ss_conf 8886177000364878721471-311222346546
No 57
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.62 E-value=1.2e-14 Score=137.70 Aligned_cols=181 Identities=19% Similarity=0.277 Sum_probs=128.9
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHCCC-----CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC
Q ss_conf 655558756561092999999999998288-----981663117989888999999999981779988643121012678
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGR-----MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~-----l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~ 77 (347)
+...||++|++++||++++++|.-++++.+ +.| .|||||||.||||+|..+|+.+-.+-....+|.-.
T Consensus 16 ~~~lRP~~l~efiGQ~~i~~~L~v~i~Aak~r~e~ldH-~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~le------ 88 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDH-VLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------ 88 (328)
T ss_pred CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCC------
T ss_conf 00559885766359599999999999999964999880-57658899889999999999868881562450016------
Q ss_pred CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH-
Q ss_conf 8679999678987545300100010134212323788755443102221111210353220554240001456777663-
Q gi|254780217|r 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE- 156 (347)
Q Consensus 78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE- 156 (347)
| .-|+-.+... ....-|.+||++|+||....-.|.--||+
T Consensus 89 ------------------------k---------~~DL~~iLt~------l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf 129 (328)
T PRK00080 89 ------------------------K---------AGDLAALLTN------LEEGDVLFIDEIHRLSPVVEEILYPAMEDF 129 (328)
T ss_pred ------------------------C---------HHHHHHHHHH------CCCCCEEEEHHHHHCCHHHHHHHHHHHHHC
T ss_conf ------------------------7---------4789999960------887876765065324888998857987752
Q ss_pred ---------CCCC--------CCEEEEECCCCCCCHHHHCEE-EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHH
Q ss_conf ---------0343--------416765044335730252036-9886479998999999997----27888967899999
Q gi|254780217|r 157 ---------PPQK--------VLFILISHASPTILSTIRSRC-LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVK 214 (347)
Q Consensus 157 ---------Pp~~--------t~fiLit~~~~~il~TI~SRc-~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~ 214 (347)
|... -.+|-.|+....|..++|+|. ..++|..-+.+++.+++.. .+.+++++.+..++
T Consensus 130 ~iDi~iG~g~~Ar~~~i~L~pFTLIGATTr~g~Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa~~l~i~i~~~~~~eIA 209 (328)
T PRK00080 130 RLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGIEIDEEGALEIA 209 (328)
T ss_pred EEEEEECCCCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 34578647865324555899834740136766577678975793366345899999999999999839887899999999
Q ss_pred HHCCCCHHHHHHHHC
Q ss_conf 975989789998814
Q gi|254780217|r 215 IAAYGSVARAIKILH 229 (347)
Q Consensus 215 ~~s~Gs~~~A~~ll~ 229 (347)
..|.|.||-|.+++.
T Consensus 210 ~rSRGTPRiAnrLLr 224 (328)
T PRK00080 210 RRSRGTPRIANRLLR 224 (328)
T ss_pred HHCCCCCHHHHHHHH
T ss_conf 863898399999999
No 58
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=6.1e-15 Score=139.95 Aligned_cols=74 Identities=28% Similarity=0.445 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEE
Q ss_conf 23237887554431022211112103532205542400014567776630343416765044335730252036988
Q gi|254780217|r 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 (347)
Q Consensus 108 ~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i 184 (347)
...+||+.|+++...+.. +.+.||+|+ .|+.||.+|||||||+|||||.+|+|||+|++++.+|||||||-...
T Consensus 34 ~Ef~ie~Akevi~eayIa--e~~~k~ii~-~A~~~n~~a~NaLLK~lEEPp~~~~fili~~~~~~lLpTI~SRl~i~ 107 (204)
T PRK08485 34 DDFKIEDAKEVIAEAYIA--ESEEKIIVI-AAPSYGIEAQNALLKILEEPPKNIKFIIVAKSKNLLLPTIRSRLIIE 107 (204)
T ss_pred CCCCHHHHHHHHHHHHHC--CCCCEEEEE-EHHHHCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 213457799999998660--368629997-15752699999999874179988079998688777478999889999
No 59
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.51 E-value=5.3e-13 Score=124.35 Aligned_cols=182 Identities=20% Similarity=0.301 Sum_probs=128.7
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCC-----CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 665555875656109299999999999828-----898166311798988899999999998177998864312101267
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSG-----RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~-----~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
+++..||+.|++++||++++++|.-+++.. -+-| .||+||||.||+|+|..+|..+-.+-....+|.-.
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDH-vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le----- 89 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDH-VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE----- 89 (332)
T ss_pred HHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCC-----
T ss_conf 430358654888518399999999999999844987674-78647998768889999999856773763662015-----
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 88679999678987545300100010134212323788755443102221111210353220554240001456777663
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
| --|+-.+. + .....-|.+||++|+|+...---|--.||.
T Consensus 90 -------------------------K---------~gDlaaiL-----t-~Le~~DVLFIDEIHrl~~~vEE~LYpaMED 129 (332)
T COG2255 90 -------------------------K---------PGDLAAIL-----T-NLEEGDVLFIDEIHRLSPAVEEVLYPAMED 129 (332)
T ss_pred -------------------------C---------HHHHHHHH-----H-CCCCCCEEEEEHHHHCCHHHHHHHHHHHHH
T ss_conf -------------------------7---------26599998-----6-398677677725531474289896467531
Q ss_pred ----------CCCCC--------CEEEEECCCCCCCHHHHCEE-EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHH
Q ss_conf ----------03434--------16765044335730252036-9886479998999999997----2788896789999
Q gi|254780217|r 157 ----------PPQKV--------LFILISHASPTILSTIRSRC-LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFV 213 (347)
Q Consensus 157 ----------Pp~~t--------~fiLit~~~~~il~TI~SRc-~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~ 213 (347)
|...+ .+|=.|+....|..++|.|. ...++.--+.+++.+++.. .+.++.++.+..+
T Consensus 130 f~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eI 209 (332)
T COG2255 130 FRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEI 209 (332)
T ss_pred EEEEEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 05778972487553476379981375101346645633688628604540588899999999888873877685799999
Q ss_pred HHHCCCCHHHHHHHHC
Q ss_conf 9975989789998814
Q gi|254780217|r 214 KIAAYGSVARAIKILH 229 (347)
Q Consensus 214 ~~~s~Gs~~~A~~ll~ 229 (347)
+.-|.|.||-|.+++.
T Consensus 210 A~rSRGTPRIAnRLLr 225 (332)
T COG2255 210 ARRSRGTPRIANRLLR 225 (332)
T ss_pred HHHCCCCCHHHHHHHH
T ss_conf 9863699389999999
No 60
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.50 E-value=1.3e-13 Score=129.36 Aligned_cols=175 Identities=20% Similarity=0.298 Sum_probs=125.6
Q ss_pred CCHHHHCCHHHHHHHHHHHHHCC-----CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHH
Q ss_conf 75656109299999999999828-----8981663117989888999999999981779988643121012678867999
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCSG-----RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~~-----~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~ 83 (347)
++|+|++||++++++|.=+++.- .+-| +||+||||.||||+|..+|..+-.+=....+|.
T Consensus 1 ~~L~eFiGQ~~vk~~L~l~I~AAk~R~e~LDH-~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~-------------- 65 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDH-LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPA-------------- 65 (305)
T ss_pred CCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCCEEEECCC--------------
T ss_conf 98011058288999999999999824897341-663175687467899999998389326740675--------------
Q ss_pred HHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH--------
Q ss_conf 967898754530010001013421232378875544310222111121035322055424000145677766--------
Q gi|254780217|r 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE-------- 155 (347)
Q Consensus 84 i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE-------- 155 (347)
+ + |. .++..-+ |. ....=|.+|||+|+|+.++-=-|==-||
T Consensus 66 -----------L-----~---kP---------gDlaaiL--t~-L~~gDVLFIDEIHRL~p~~EE~LYpAMEDF~lDi~I 114 (305)
T TIGR00635 66 -----------L-----E---KP---------GDLAAIL--TN-LEEGDVLFIDEIHRLSPAIEELLYPAMEDFRLDIVI 114 (305)
T ss_pred -----------C-----C---CH---------HHHHHHH--HH-CCCCCEEECCHHHHCCHHHHHHCCCCCCCEEEEEEE
T ss_conf -----------5-----4---75---------7899999--70-568963101256504833453105300121787787
Q ss_pred --HCCCCCC------EEEE--ECCCCCCCHHHHCEE-EEEECCCCCHHHHHHHHHHH----CCCCCHHHHHHHHHHCCCC
Q ss_conf --3034341------6765--044335730252036-98864799989999999972----7888967899999975989
Q gi|254780217|r 156 --EPPQKVL------FILI--SHASPTILSTIRSRC-LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGS 220 (347)
Q Consensus 156 --EPp~~t~------fiLi--t~~~~~il~TI~SRc-~~i~f~~l~~~~~~~~L~~~----~~~~~~~~~~~~~~~s~Gs 220 (347)
-|...|+ |-|| |+.+..|-.+++||- ...+|.--+++|+.++++.. +.++.++++..+++-|-|.
T Consensus 115 G~Gp~Ar~v~ldLpPFTLvGATTR~G~lt~PLrdRFG~~~rl~fY~~~EL~~Iv~R~A~~L~~ei~~~~a~~IArrSRGT 194 (305)
T TIGR00635 115 GKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTPEELAEIVSRSAGLLNIEIEQEAALEIARRSRGT 194 (305)
T ss_pred ECCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
T ss_conf 12898525760686944200003477410313345447454026898789999875334414300778999998754786
Q ss_pred HHHHHHHHC
Q ss_conf 789998814
Q gi|254780217|r 221 VARAIKILH 229 (347)
Q Consensus 221 ~~~A~~ll~ 229 (347)
||-|.+++-
T Consensus 195 PRIAnRLLR 203 (305)
T TIGR00635 195 PRIANRLLR 203 (305)
T ss_pred HHHHHHHHH
T ss_conf 378887767
No 61
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.31 E-value=8.3e-09 Score=90.57 Aligned_cols=212 Identities=18% Similarity=0.196 Sum_probs=132.0
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC-
Q ss_conf 966555587565610929999999999982---8898166311798988899999999998177998864312101267-
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCS---GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP- 76 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~---~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~- 76 (347)
++.--|-| ++++|-++..+.+..++.. |..|...+++||||+|||.+++.+.+.+-.....-....-.|....
T Consensus 22 ~L~~~yvP---~~l~~Re~Ei~~l~~~l~~~l~g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t 98 (394)
T PRK00411 22 VLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRT 98 (394)
T ss_pred HCCCCCCC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 37998889---989885999999999999997599998479988999989999999999999746896599996966898
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHH-
Q ss_conf 88679999678987545300100010134212323788755-4431022211112103532205542400014567776-
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL- 154 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~-l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~L- 154 (347)
.......+... ... .......++.+++-+ +.+.+. ..++.=|+|+|++|.+-...++-+|-.|
T Consensus 99 ~~~i~~~i~~~-----------L~~-~~~p~~G~s~~~~~~~l~~~l~---~~~~~~ivvLDEiD~L~~~~~~~vLY~L~ 163 (394)
T PRK00411 99 RYAILSEIARS-----------LFG-HPPPSSGLSFDELFDKIAEYLD---ERDRVLIVALDDINYLVEKEGNDVLYSLL 163 (394)
T ss_pred HHHHHHHHHHH-----------HCC-CCCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 99999999999-----------569-9898778789999999999861---66975899996554020366508999998
Q ss_pred ---HH-CCCCCCEEEEECCCC---CCCHHHHCEE--EEEECCCCCHHHHHHHHHHH------CCCCCHHHHHHHHHHCC-
Q ss_conf ---63-034341676504433---5730252036--98864799989999999972------78889678999999759-
Q gi|254780217|r 155 ---EE-PPQKVLFILISHASP---TILSTIRSRC--LSIKFNSLSENNLYKALEQL------KIMGWDSKRDFVKIAAY- 218 (347)
Q Consensus 155 ---EE-Pp~~t~fiLit~~~~---~il~TI~SRc--~~i~f~~l~~~~~~~~L~~~------~~~~~~~~~~~~~~~s~- 218 (347)
|+ |.....+|.|+|..+ ++.|-++||| ..+.|.|-+.+++.++|.+- ..-.+++.+.+++..+.
T Consensus 164 r~~~~~~~~~~~vI~IsN~~~~~~~Ldprv~S~l~~~~i~F~PY~~~qL~~IL~~R~~~af~~gv~~~~~i~~~A~~~a~ 243 (394)
T PRK00411 164 RAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFGPEEIVFPPYTADEIFDILKDRVEEGFYPGVVSDEVLELIADLTGR 243 (394)
T ss_pred HCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 54022688738999997687177664077750278628985899989999999999984145567897899999999855
Q ss_pred --CCHHHHHHHHCC
Q ss_conf --897899988145
Q gi|254780217|r 219 --GSVARAIKILHY 230 (347)
Q Consensus 219 --Gs~~~A~~ll~~ 230 (347)
|+.|+|+.++-.
T Consensus 244 ~~GDaR~Aldllr~ 257 (394)
T PRK00411 244 EHGDARVAIDLLRR 257 (394)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 04758999999999
No 62
>KOG1969 consensus
Probab=99.27 E-value=9.8e-10 Score=98.05 Aligned_cols=187 Identities=18% Similarity=0.229 Sum_probs=136.1
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHC----------CCC----------------------C-EEEEECCCCCCCHHHH
Q ss_conf 555587565610929999999999982----------889----------------------8-1663117989888999
Q gi|254780217|r 4 RAFDPVYNQRLFGHEDIEKFLSQYYCS----------GRM----------------------H-HALLFEGEQGIGKATL 50 (347)
Q Consensus 4 ~~~~p~~~~~i~G~~~~~~~L~~~~~~----------~~l----------------------~-ha~Lf~Gp~GiGK~~~ 50 (347)
.||||++|.+++|.+..-+.+...++. .|+ + --+|++||||+||+|+
T Consensus 263 dky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTL 342 (877)
T KOG1969 263 DKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTL 342 (877)
T ss_pred CCCCHHHHHHHHCCHHHHHHHHHHHHHHCHHHHCCHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 11371678887452068799999998615786401475543354664345563246866798400687536887872479
Q ss_pred HHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHH-HHHHCCCCCCC-
Q ss_conf 9999999817799886431210126788679999678987545300100010134212323788755-44310222111-
Q gi|254780217|r 51 GFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANT- 128 (347)
Q Consensus 51 A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~-l~~~~~~~~~~- 128 (347)
|..+|+. ||- .+.+|++ .|+. +...+++ +-.-+...+..
T Consensus 343 AHViAkq-----------aGY-------------------sVvEINA-SDeR--------t~~~v~~kI~~avq~~s~l~ 383 (877)
T KOG1969 343 AHVIAKQ-----------AGY-------------------SVVEINA-SDER--------TAPMVKEKIENAVQNHSVLD 383 (877)
T ss_pred HHHHHHH-----------CCC-------------------EEEEECC-CCCC--------CHHHHHHHHHHHHHHCCCCC
T ss_conf 9999986-----------285-------------------4887325-5543--------47889999999886411225
Q ss_pred --CCCHHHHHHHHHHCCHHHHHHHHHHHH--HC----CCC---------------CCEEEEECCCC-CCCHHHHCEEEEE
Q ss_conf --121035322055424000145677766--30----343---------------41676504433-5730252036988
Q gi|254780217|r 129 --GYWRVIMIDPVDGMNRNAANALLKSLE--EP----PQK---------------VLFILISHASP-TILSTIRSRCLSI 184 (347)
Q Consensus 129 --~~~Ki~IId~ad~ln~~AaNALLK~LE--EP----p~~---------------t~fiLit~~~~-~il~TI~SRc~~i 184 (347)
+.-...|||++|---..|-+++|+.++ ++ +++ --+|-|||+.. -=|-.+|-=|+.+
T Consensus 384 adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii 463 (877)
T KOG1969 384 ADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEII 463 (877)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHHHCCCCEEEE
T ss_conf 68886359984246872899999999997416142168663203455530465458778986475553333102104899
Q ss_pred ECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 6479998999999997----27888967899999975989789998814
Q gi|254780217|r 185 KFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 185 ~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
.|.|++++.+.+.|.. ++...+...+..+..++++++|-.++-++
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQ 512 (877)
T KOG1969 464 AFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQ 512 (877)
T ss_pred EECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9569976689999999976415778878999999986130988888999
No 63
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.14 E-value=2e-08 Score=87.53 Aligned_cols=180 Identities=17% Similarity=0.145 Sum_probs=114.5
Q ss_pred CCHHHHCCHHHHHHHHHHHHHC-----------C-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 7565610929999999999982-----------8-898166311798988899999999998177998864312101267
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCS-----------G-RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~-----------~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
.+|++|-|.+++++.|..++.- | +.|-++|+|||||+|||.+|+++|...-+.
T Consensus 129 v~~~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~--------------- 193 (390)
T PRK03992 129 VTYEDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--------------- 193 (390)
T ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC---------------
T ss_conf 98466149899999999999998659899997699999727868989997899999999874888---------------
Q ss_pred CCHHHHHHHCCCCCCEEEECCCC-HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----------
Q ss_conf 88679999678987545300100-010134212323788755443102221111210353220554240-----------
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSL-NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR----------- 144 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~-~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----------- 144 (347)
++.+..+. -.| ..+ =+-..||++-.... ...--|++||++|.+-.
T Consensus 194 ---------------fi~v~~s~l~sk--~vG--esek~vr~lF~~Ar----~~aP~IiFiDEiDai~~~R~~~~~~g~~ 250 (390)
T PRK03992 194 ---------------FIRVVGSELVQK--FIG--EGARLVRELFELAR----EKAPSIIFIDEIDAIAAKRTDSGTSGDR 250 (390)
T ss_pred ---------------EEEEEHHHHHHC--CCC--HHHHHHHHHHHHHH----HHCCCEEEHHHHHHHHCCCCCCCCCCCH
T ss_conf ---------------799667997524--541--79999999999999----7099089714325663356778886208
Q ss_pred HHHH---HHHHHHH--HCCCCCCEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHHHHCCC---CCHHHHHHH
Q ss_conf 0014---5677766--303434167650443357302520--36-98864799989999999972788---896789999
Q gi|254780217|r 145 NAAN---ALLKSLE--EPPQKVLFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALEQLKIM---GWDSKRDFV 213 (347)
Q Consensus 145 ~AaN---ALLK~LE--EPp~~t~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~~~~~~---~~~~~~~~~ 213 (347)
+.+. .||--|. ++..++++|-.||.|+.|-|.++- |. +.+.|..|+.+.-.++|+-...+ ..+-....+
T Consensus 251 ev~r~l~qLL~emDG~~~~~~V~VIaATNrpd~LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~~~~~l~~dvdl~~l 330 (390)
T PRK03992 251 EVQRTLMQLLAEMDGFDPRGNVKIIAATNRPDILDPALLRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEEL 330 (390)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 89999999999744877778827996069810059777547765238870894999999999998479999988899999
Q ss_pred HHHCCCCHHHHHH
Q ss_conf 9975989789998
Q gi|254780217|r 214 KIAAYGSVARAIK 226 (347)
Q Consensus 214 ~~~s~Gs~~~A~~ 226 (347)
+..+.|--|.-+.
T Consensus 331 A~~T~G~SGADI~ 343 (390)
T PRK03992 331 AELTEGASGADLK 343 (390)
T ss_pred HHHCCCCCHHHHH
T ss_conf 9768799899999
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.04 E-value=1.7e-09 Score=96.17 Aligned_cols=138 Identities=28% Similarity=0.298 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf 09299999999999828898166311798988899999999998177998864312101267886799996789875453
Q gi|254780217|r 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 (347)
Q Consensus 15 ~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~ 94 (347)
.|+......+..........| +||+||||+|||++|+++|+.+-.. .. .++.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~-ill~GppGtGKT~la~~ia~~~~~~----~~-----------------------~~~~ 52 (151)
T cd00009 1 VGQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANELFRP----GA-----------------------PFLY 52 (151)
T ss_pred CCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCC----CC-----------------------CEEE
T ss_conf 985799999999981879980-8998999988659999999971213----79-----------------------8278
Q ss_pred ECCCCHHHCCCCCCCCCHHHHHH--HHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC------CCCCEEEE
Q ss_conf 00100010134212323788755--44310222111121035322055424000145677766303------43416765
Q gi|254780217|r 95 LSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP------QKVLFILI 166 (347)
Q Consensus 95 i~~~~~~k~~~~~~~I~vd~IR~--l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp------~~t~fiLi 166 (347)
+....... + -.++..+. ...........++..|++|||+|.|....+++++..|++.. .+..+|++
T Consensus 53 ~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~l~~~~~~~~~~~~~~vI~~ 126 (151)
T cd00009 53 LNASDLLE--G----LVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGA 126 (151)
T ss_pred EEHHHCCH--H----HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 54777046--7----77757605778898999999769986982016655999999999999871575406788899995
Q ss_pred ECCCC--CCCHHHHCEEE-EEEC
Q ss_conf 04433--57302520369-8864
Q gi|254780217|r 167 SHASP--TILSTIRSRCL-SIKF 186 (347)
Q Consensus 167 t~~~~--~il~TI~SRc~-~i~f 186 (347)
|+.+. .+.+.+.+||. .+.+
T Consensus 127 tn~~~~~~~~~~~~~R~~~~i~~ 149 (151)
T cd00009 127 TNRPLLGDLDRALYDRLDIRIVI 149 (151)
T ss_pred ECCCCCCCHHHHHHCCCCEEEEC
T ss_conf 28998868377642559869863
No 65
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=99.03 E-value=7.9e-09 Score=90.74 Aligned_cols=211 Identities=18% Similarity=0.160 Sum_probs=120.9
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHC---CC-CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 6555587565610929999999999982---88-9816631179898889999999999817799886431210126788
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCS---GR-MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~~---~~-l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~ 78 (347)
..||.|++.+++.-|+.-++.....++. ++ -.+-+|++||+|+||+|+...+|+.+-+.--.=..|...-.. .
T Consensus 10 ~ekyaP~~l~ELAVHKKKV~eV~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~~~~---~ 86 (490)
T pfam03215 10 TEKYKPRRRDELAIHKKKIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYLHNP---D 86 (490)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCC---C
T ss_conf 1430888789985535439999999999854777731899879899889999999999759689981486545677---5
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHC----CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 67999967898754530010001013421232378875544310----22211112103532205542400014567776
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL----SLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~----~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~L 154 (347)
..+. ..|+.- ..+.. ..-..++-.+...+. +++...++.||++|++.-.+...+.-+|...|
T Consensus 87 ~~~q------~~d~~g-------~~~~~-~~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~d~~~fr~~L 152 (490)
T pfam03215 87 NECQ------KPDFRG-------DCIVN-SLSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFYSDAEKFREVI 152 (490)
T ss_pred CHHH------CCCCCC-------CCCCC-CCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 0221------012123-------45766-663777767887622335654457887359999658874423669999999
Q ss_pred HHCC--C-CCCEEEEEC---------CCC-------CC-CHHHHCEE--EEEECCCCCHHHHHHHHHHH----C-CCC--
Q ss_conf 6303--4-341676504---------433-------57-30252036--98864799989999999972----7-888--
Q gi|254780217|r 155 EEPP--Q-KVLFILISH---------ASP-------TI-LSTIRSRC--LSIKFNSLSENNLYKALEQL----K-IMG-- 205 (347)
Q Consensus 155 EEPp--~-~t~fiLit~---------~~~-------~i-l~TI~SRc--~~i~f~~l~~~~~~~~L~~~----~-~~~-- 205 (347)
-+.= . .+-+|+|.+ +.. +| .|.|.--| -.+.|+|+....|.+.|+.+ + ...
T Consensus 153 ~~~L~s~~~~PlV~IiSEt~s~~g~~~~~~~~~ta~rLlg~eIl~hp~i~~I~FNpIApT~M~KaL~~I~~kE~~~~~~~ 232 (490)
T pfam03215 153 REVLQSIWHLPLIFCLTECNSLEGDNNQDRFGIDAETIMTKDILIMPRIDTITFNPIAPTFMKKALVRISVQEGKLKSPK 232 (490)
T ss_pred HHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99997089998799997046666776433232107863598887088963698688878899999999999857655675
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 9678999999759897899988145
Q gi|254780217|r 206 WDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 206 ~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
.....+.++..|.|++|-|++.++.
T Consensus 233 ~~~~le~Ia~~S~GDIRsAInsLQF 257 (490)
T pfam03215 233 SDSKLEVICQEAGGDLRSAINSLQF 257 (490)
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 2038999998648729999999998
No 66
>CHL00176 ftsH cell division protein; Validated
Probab=99.02 E-value=8.7e-09 Score=90.38 Aligned_cols=185 Identities=15% Similarity=0.203 Sum_probs=121.1
Q ss_pred CCHHHHCCHHHHHHHHHHHHH-----------CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC
Q ss_conf 756561092999999999998-----------288981663117989888999999999981779988643121012678
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYC-----------SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~-----------~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~ 77 (347)
..|+||.|++++++.|..... ..|+|.+.|++||||+|||.+|+++|.. .+.|.-.++.
T Consensus 174 vtF~DVaG~~eaK~el~EivdfLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAgE-------a~vpF~~~sg--- 243 (631)
T CHL00176 174 ITFNDVAGVEEAKEELEEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE-------AEVPFFSISG--- 243 (631)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCC-------CCCCEEEEEH---
T ss_conf 775322885899999999999835958876449968965898898998788999998565-------5884699883---
Q ss_pred CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--------------
Q ss_conf 867999967898754530010001013421232378875544310222111121035322055424--------------
Q gi|254780217|r 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-------------- 143 (347)
Q Consensus 78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-------------- 143 (347)
+ ++.+.-. -.+-.-||+|-+..... .-.|++||++|..-
T Consensus 244 ----------s--~F~e~~v-----------Gvga~rVR~LF~~Ar~~----aP~IiFIDEiDaig~~Rg~~~~gg~~e~ 296 (631)
T CHL00176 244 ----------S--EFVEMFV-----------GVGAARVRDLFKKAKEN----SPCIVFIDEIDAVGRQRGAGVGGGNDER 296 (631)
T ss_pred ----------H--HHHHHHC-----------CHHHHHHHHHHHHHHHC----CCEEEEEEEEEEEEECCCCCCCCCCCHH
T ss_conf ----------7--8556421-----------55589999999999863----9969998710120114789888985089
Q ss_pred HHHHHHHHHHHH--HCCCCCCEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHHHHCCC---CCHHHHHHHHH
Q ss_conf 000145677766--303434167650443357302520--36-98864799989999999972788---89678999999
Q gi|254780217|r 144 RNAANALLKSLE--EPPQKVLFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALEQLKIM---GWDSKRDFVKI 215 (347)
Q Consensus 144 ~~AaNALLK~LE--EPp~~t~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~~~~~~---~~~~~~~~~~~ 215 (347)
.+.-|.||--|- +..++.+.|=.||.|+.|-|.++- |- +++.+..|+.+.-.++|+-...+ .++-.+..++.
T Consensus 297 e~tlnqLL~emDGf~~~~gViViaATNrpd~LDpALlRPGRFDR~I~V~lPD~~gR~~IL~vh~k~~~l~~dvdl~~iA~ 376 (631)
T CHL00176 297 EQTLNQLLTEMDGFEGNKGVIVIAATNRIDILDAALLRPGRFDRQVTVSLPDFEGRLDILKVHARNKKLAEDVSLELIAR 376 (631)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999999984288878886999825885545686626887754998269898999999999970786665300999986
Q ss_pred HCCCCHHHHH-HHHCC
Q ss_conf 7598978999-88145
Q gi|254780217|r 216 AAYGSVARAI-KILHY 230 (347)
Q Consensus 216 ~s~Gs~~~A~-~ll~~ 230 (347)
.+.|--|.-+ ++++.
T Consensus 377 ~T~GfSGAdLanlvNE 392 (631)
T CHL00176 377 RTPGFSGADLANLLNE 392 (631)
T ss_pred HCCCCCHHHHHHHHHH
T ss_conf 2699867888769999
No 67
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.00 E-value=1.1e-08 Score=89.61 Aligned_cols=195 Identities=16% Similarity=0.112 Sum_probs=114.5
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCC
Q ss_conf 56561092999999999998288981663117989888999999999981779988643121012678867999967898
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~h 89 (347)
..+.|+|.+..++.+...+...+=.+ -++.|+||+|||..+..+|+.|.....+..- ...
T Consensus 177 klDpvIGRd~EI~r~i~IL~RR~KNN-piLvGepGVGKTAIvEGLA~rI~~g~VP~~L----~~~--------------- 236 (823)
T CHL00095 177 NLDPVIGRDKEIERVIQILGRRTKNN-PILIGEPGVGKTAIAEGLAQRIANRDVPDIL----EDK--------------- 236 (823)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHHCCCCCHHH----CCC---------------
T ss_conf 99987595699999999997732488-5023799987999999999976088998687----599---------------
Q ss_pred CCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC--------CHHHHHHHHHHHHHCCCCC
Q ss_conf 75453001000101342123237887554431022211112103532205542--------4000145677766303434
Q gi|254780217|r 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM--------NRNAANALLKSLEEPPQKV 161 (347)
Q Consensus 90 pd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~l--------n~~AaNALLK~LEEPp~~t 161 (347)
.++.++...--.+-+.+..- =+-+..+++.+.. .+.=|.+||++|.+ +..|+|-|--.|-- ..-
T Consensus 237 -~i~sLDl~~L~AGtkyRGeF-EeRlk~il~ei~~----~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLar--Gel 308 (823)
T CHL00095 237 -LVLTLDIGLLLAGTKYRGEF-EERIKKIMDEIKK----ANNIILVIDEIHTLIGAGAAEGAIDAANILKPALAR--GKL 308 (823)
T ss_pred -CEEEEEHHHHHHCCCCCHHH-HHHHHHHHHHHHH----CCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHC--CCC
T ss_conf -36884288775334222679-9999999999985----798699973516532889766643178876578648--986
Q ss_pred CEEEEECCCC--CC---CHHHHCEEEEEECCCCCHHHHHHHHHH--------HCCCCCHHHHHHHHHHCCC------CHH
Q ss_conf 1676504433--57---302520369886479998999999997--------2788896789999997598------978
Q gi|254780217|r 162 LFILISHASP--TI---LSTIRSRCLSIKFNSLSENNLYKALEQ--------LKIMGWDSKRDFVKIAAYG------SVA 222 (347)
Q Consensus 162 ~fiLit~~~~--~i---l~TI~SRc~~i~f~~l~~~~~~~~L~~--------~~~~~~~~~~~~~~~~s~G------s~~ 222 (347)
.+|-.|+..+ +. -+.+--|.|.+.+..|+.++...+|.. .+..+.++++..+..+|.- =|.
T Consensus 309 ~~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav~LS~RYi~dr~LPD 388 (823)
T CHL00095 309 QCIGATTLEEYRKHIEKDPALERRFQPVYVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAAKLSDQYIKDRFLPD 388 (823)
T ss_pred EEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 69970788999998530588996268410289987999999999999998750885047899999998776403777821
Q ss_pred HHHHHHCCCH
Q ss_conf 9998814577
Q gi|254780217|r 223 RAIKILHYDC 232 (347)
Q Consensus 223 ~A~~ll~~~~ 232 (347)
+|+.+++...
T Consensus 389 KAIDllDeA~ 398 (823)
T CHL00095 389 KAIDLLDEAG 398 (823)
T ss_pred HHHHHHHHHH
T ss_conf 7888899998
No 68
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=99.00 E-value=3.2e-08 Score=85.84 Aligned_cols=224 Identities=19% Similarity=0.248 Sum_probs=140.4
Q ss_pred CCCCCCC-HHHHCCHHHHHHH---HHHHHHCCCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC-CHHHCCCCC-
Q ss_conf 5555875-6561092999999---99999828898-166311798988899999999998177998864-312101267-
Q gi|254780217|r 4 RAFDPVY-NQRLFGHEDIEKF---LSQYYCSGRMH-HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA-PVRMCNPDP- 76 (347)
Q Consensus 4 ~~~~p~~-~~~i~G~~~~~~~---L~~~~~~~~l~-ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~-~~~~~~~~~- 76 (347)
....|+. -+-+|||.++.+. ..+.++.+++. .|+||.||||+||+.+|.++|+.|=...+...- .....+++.
T Consensus 15 ~~~~~~~~~~GlVGQ~~AReAagiiv~mIk~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~~i~gSEvyS~E~k 94 (395)
T pfam06068 15 EDGEARYVSEGLVGQEKAREAAGVIVEMIKEGKIAGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMK 94 (395)
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEEECCCCC
T ss_conf 88888364577545499999989999999727757738998779998889999999997487997345001112125654
Q ss_pred ----CCHHHH-------------------------------------------------------------HH--HCCCC
Q ss_conf ----886799-------------------------------------------------------------99--67898
Q gi|254780217|r 77 ----CSPFVK-------------------------------------------------------------QM--ASHAL 89 (347)
Q Consensus 77 ----~~~~~~-------------------------------------------------------------~i--~~~~h 89 (347)
-...+| .+ +.=.-
T Consensus 95 KTE~L~qafRrsIGvrIkE~~eVyEGEV~ei~~~~~~~p~~~~~k~~~~~~itLkT~~~~~~l~l~~~i~e~l~kekV~~ 174 (395)
T pfam06068 95 KTEALTQAFRKAIGVRIKEEKEVYEGEVVELEIEEAENPLSGYGKTIKHGKITLKTTKMEKTLKLGPKIYEQLQKEKVQA 174 (395)
T ss_pred HHHHHHHHHHHHHCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEECCHHHHHHHHHCCCCC
T ss_conf 88999999988755686788899999999999741468889876540379999997588178725889999999749866
Q ss_pred CCEEEECCCCHH-------------------------HCCC-------------------------------CCCCCCHH
Q ss_conf 754530010001-------------------------0134-------------------------------21232378
Q gi|254780217|r 90 HDFLYLSYSLNP-------------------------KTGK-------------------------------WRTVITVD 113 (347)
Q Consensus 90 pd~~~i~~~~~~-------------------------k~~~-------------------------------~~~~I~vd 113 (347)
-|+++|+..... ++.- .++.|+ +
T Consensus 175 GDVI~Id~~sG~V~klGRs~~~a~~~D~~~~~~V~~P~Gev~K~KEvv~~vTLHDlDv~Nar~qg~~slf~~~~~EIt-~ 253 (395)
T pfam06068 175 GDVIYIDKNTGKVKKLGRSFARATDFDLEATEFVPCPKGEVHKRKEVVQTVTLHDIDVANARPQGILSLFSPKKGEIT-S 253 (395)
T ss_pred CCEEEEECCCCEEEEEECCHHHHHHCCCCCCEEEECCCCCCEEEEEEEEEEEHHHHHHHCCCCCCHHHHHCCCCCCCC-H
T ss_conf 878999858715999762320343326665479778998624688999986123412221575256764179876069-9
Q ss_pred HHHH-HHHHCCCCCCCCC----CHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEC------------CCCCCCHH
Q ss_conf 8755-4431022211112----10353220554240001456777663034341676504------------43357302
Q gi|254780217|r 114 EIRR-IRYFLSLTANTGY----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH------------ASPTILST 176 (347)
Q Consensus 114 ~IR~-l~~~~~~~~~~~~----~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~------------~~~~il~T 176 (347)
++|+ +.+.++.--.+|. .-|.+||++|.|..++.--|=|.||.|- .-++||.|| .|+.||.-
T Consensus 254 elR~eInk~V~~~i~eG~AElvpGVLFIDEvHMLDiEcFsfLnralEs~l-aPivI~ATNRG~~~IRGTd~~sPHGiP~D 332 (395)
T pfam06068 254 ELREEINKKVNKWIEEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESEL-APIVILATNRGICTIRGTDIISPHGIPLD 332 (395)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCEEEECCHHCCHHHHHHHHHHHCCCC-CCEEEEEECCCCEEECCCCCCCCCCCCHH
T ss_conf 99999999999998648679842746885000000589988877650567-87699984465203525677588899877
Q ss_pred HHCEEEEEECCCCCHHHHHHHHH----HHCCCCCHHHHHHHHHHCC-CCHHHHHHHHC
Q ss_conf 52036988647999899999999----7278889678999999759-89789998814
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAY-GSVARAIKILH 229 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~----~~~~~~~~~~~~~~~~~s~-Gs~~~A~~ll~ 229 (347)
.+.||..++-.|.+.+++++++. .++...++++++.+..++. .|.|=|++++.
T Consensus 333 lLDRllII~T~py~~~ei~~Ii~iRa~~E~v~l~~~al~~L~~ig~~~SLRYaiqLlt 390 (395)
T pfam06068 333 LLDRLLIITTEPYTREEIKQILEIRAQEEGVEISEEALDLLAKIGEETSLRYAIQLLT 390 (395)
T ss_pred HHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 7730258856889989999999987776078779899999998653202999998725
No 69
>CHL00181 cbbX CbbX; Provisional
Probab=98.99 E-value=7.8e-09 Score=90.79 Aligned_cols=155 Identities=16% Similarity=0.213 Sum_probs=98.3
Q ss_pred HH-HHCCHHHHHHHHHH---HHHCCC-----------C-CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCC
Q ss_conf 65-61092999999999---998288-----------9-81663117989888999999999981779988643121012
Q gi|254780217|r 11 NQ-RLFGHEDIEKFLSQ---YYCSGR-----------M-HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP 74 (347)
Q Consensus 11 ~~-~i~G~~~~~~~L~~---~~~~~~-----------l-~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~ 74 (347)
++ +++|.+.+++.+.. .+..++ . .| ++|.||||+||||.|+.+|+.+-.. |.+
T Consensus 21 Ld~eliGL~~VK~~v~~l~~~~~~~~~R~~~Gl~~~~~s~h-~vF~GnPGTGKTTVARl~a~il~~l--------G~L-- 89 (287)
T CHL00181 21 LDEELIGLVPVKTRIREIAALLLVDRLRKNLGLVSSSPGLH-MSFTGSPGTGKTTVALKMADILYRL--------GYI-- 89 (287)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHHC--------CCC--
T ss_conf 98864696999999999999999999999879998887653-8887899867999999999999986--------995--
Q ss_pred CCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC---------HH
Q ss_conf 678867999967898754530010001013421232378875544310222111121035322055424---------00
Q gi|254780217|r 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN---------RN 145 (347)
Q Consensus 75 ~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln---------~~ 145 (347)
+.+++.++.+.---......+ -...+++++. ..|+ |.+||+|..|. .+
T Consensus 90 -------------~~g~vve~~r~dLvg~yvG~T---a~kt~~~i~~-----a~GG--VLfIDEAY~L~~~~~~~dfg~e 146 (287)
T CHL00181 90 -------------KKGHLITVTRDDLVGQYIGHT---APKTKEVLKK-----AMGG--VLFIDEAYYLYKPDNERDYGAE 146 (287)
T ss_pred -------------CCCEEEEECHHHHCCCCCCCC---HHHHHHHHHH-----CCCC--EEEEECHHHHCCCCCCCCCHHH
T ss_conf -------------589589953588416353521---6999999996-----4598--7998244653578899983799
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCC---CCC---HHHHCEEE-EEECCCCCHHHHHHHHHH
Q ss_conf 01456777663034341676504433---573---02520369-886479998999999997
Q gi|254780217|r 146 AANALLKSLEEPPQKVLFILISHASP---TIL---STIRSRCL-SIKFNSLSENNLYKALEQ 200 (347)
Q Consensus 146 AaNALLK~LEEPp~~t~fiLit~~~~---~il---~TI~SRc~-~i~f~~l~~~~~~~~L~~ 200 (347)
|-+.|+|.||.+..+.++|+.- ++. .++ |-++||-- .+.|..-+.+++.+++..
T Consensus 147 aidtLl~~me~~~~~lvvI~AG-Y~~eM~~fl~~NpGL~sRf~~~i~F~dYt~~EL~~I~~~ 207 (287)
T CHL00181 147 AIEILLQVMENQRDDLVVIFAG-YKDRMDKFYESNPGLSSRVANHVDFPDYTPEELLQIAKM 207 (287)
T ss_pred HHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHHCCCHHHHCCCEEECCCCCHHHHHHHHHH
T ss_conf 9999999987079988999846-789999999859047876887237798599999999999
No 70
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.98 E-value=5.2e-09 Score=92.17 Aligned_cols=181 Identities=19% Similarity=0.268 Sum_probs=118.7
Q ss_pred CCCCHHHHCCHHHHHHH---HHHHHHC----C-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 58756561092999999---9999982----8-89816631179898889999999999817799886431210126788
Q gi|254780217|r 7 DPVYNQRLFGHEDIEKF---LSQYYCS----G-RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 (347)
Q Consensus 7 ~p~~~~~i~G~~~~~~~---L~~~~~~----~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~ 78 (347)
+--.|++|+||+.+++. +...++. | =-|...|||||||+||+.+|+++|... +.|.-...
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-------kvp~l~vk----- 183 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-------KVPLLLVK----- 183 (368)
T ss_pred CCCCHHHHHCHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCC-------CCCEEEEC-----
T ss_conf 366176641639888887999999649687634575416877899964879999872545-------78548711-----
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC------------HHH
Q ss_conf 67999967898754530010001013421232378875544310222111121035322055424------------000
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN------------RNA 146 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln------------~~A 146 (347)
....| |.|-. -.-.+||++-.....+ .-.|++||+.|.+- .+.
T Consensus 184 -at~li--GehVG------------------dgar~Ihely~rA~~~----aPcivFiDE~DAiaLdRryQelRGDVsEi 238 (368)
T COG1223 184 -ATELI--GEHVG------------------DGARRIHELYERARKA----APCIVFIDELDAIALDRRYQELRGDVSEI 238 (368)
T ss_pred -HHHHH--HHHHH------------------HHHHHHHHHHHHHHHC----CCEEEEEHHHHHHHHHHHHHHHCCCHHHH
T ss_conf -68888--87743------------------5989999999988751----98499840024555304578864549999
Q ss_pred HHHHHHHHHHC--CCCCCEEEEECCCCCCCHHHHCEE-EEEECCCCCHHHHHHHHHHHC---CCCCHHHHHHHHHHCCCC
Q ss_conf 14567776630--343416765044335730252036-988647999899999999727---888967899999975989
Q gi|254780217|r 147 ANALLKSLEEP--PQKVLFILISHASPTILSTIRSRC-LSIKFNSLSENNLYKALEQLK---IMGWDSKRDFVKIAAYGS 220 (347)
Q Consensus 147 aNALLK~LEEP--p~~t~fiLit~~~~~il~TI~SRc-~~i~f~~l~~~~~~~~L~~~~---~~~~~~~~~~~~~~s~Gs 220 (347)
.||||--|.-- ..++++|-.||+|+.+-|.||||. -.+.|.-++.++..+++.... +--.+.....++..+.|-
T Consensus 239 VNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 239 VNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGM 318 (368)
T ss_pred HHHHHHHCCCCCCCCCEEEEEECCCHHHCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
T ss_conf 99999850174457756999505984650788886556506564888589999999989858976556899999984787
Q ss_pred HHHH
Q ss_conf 7899
Q gi|254780217|r 221 VARA 224 (347)
Q Consensus 221 ~~~A 224 (347)
-|+-
T Consensus 319 SgRd 322 (368)
T COG1223 319 SGRD 322 (368)
T ss_pred CCHH
T ss_conf 7206
No 71
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.94 E-value=2.3e-08 Score=87.04 Aligned_cols=195 Identities=17% Similarity=0.133 Sum_probs=123.2
Q ss_pred CCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCC
Q ss_conf 75656109299999999999828898166311798988899999999998177998864312101267886799996789
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (347)
...+.|+|.++.++.+...+...+=.+ -++.|+||+|||..+..+|+.+.....+..- ...
T Consensus 183 gklDPviGR~~Ei~r~i~iL~Rr~KNN-piLvGepGVGKTAIvEGLA~rI~~g~VP~~L----~~~-------------- 243 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCRRRKNN-PLLVGESGVGKTAIAEGLAWRIVQGDVPEVM----ADC-------------- 243 (758)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHHCCCCCHHH----CCC--------------
T ss_conf 899987384899999999997632589-6021699986999999999999738997655----898--------------
Q ss_pred CCCEEEECCCCHHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCCHHHHHHHHHHCC---------HHHHHHHHHHHHHCC
Q ss_conf 8754530010001013421232378-875544310222111121035322055424---------000145677766303
Q gi|254780217|r 89 LHDFLYLSYSLNPKTGKWRTVITVD-EIRRIRYFLSLTANTGYWRVIMIDPVDGMN---------RNAANALLKSLEEPP 158 (347)
Q Consensus 89 hpd~~~i~~~~~~k~~~~~~~I~vd-~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln---------~~AaNALLK~LEEPp 158 (347)
.++.++....-.+-+.+.. -+ -++.+++.+.. .+.-|.+||++|.+- .+|+|-|--.|-.
T Consensus 244 --~i~~Ldl~~LiAGtkyRGe--fEeRlk~vi~e~~~----~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~Lar-- 313 (758)
T PRK11034 244 --TIYSLDIGSLLAGTKYRGD--FEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-- 313 (758)
T ss_pred --EEEEEEHHHHHCCCCCCHH--HHHHHHHHHHHHHH----CCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHC--
T ss_conf --8998458778616864154--99999999999985----7985999804344226887677764678874578746--
Q ss_pred CCCCEEEEECCC--CCCC---HHHHCEEEEEECCCCCHHHHHHHHHH--------HCCCCCHHHHHHHHHHCCC------
Q ss_conf 434167650443--3573---02520369886479998999999997--------2788896789999997598------
Q gi|254780217|r 159 QKVLFILISHAS--PTIL---STIRSRCLSIKFNSLSENNLYKALEQ--------LKIMGWDSKRDFVKIAAYG------ 219 (347)
Q Consensus 159 ~~t~fiLit~~~--~~il---~TI~SRc~~i~f~~l~~~~~~~~L~~--------~~~~~~~~~~~~~~~~s~G------ 219 (347)
..-.+|-.|+.. .+.. +.+--|.|.+.+..|+.++...+|.. .+..+.++++..+..+|.-
T Consensus 314 G~l~~IgaTT~~EYrk~iekD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~al~~av~Ls~rYi~dr~ 393 (758)
T PRK11034 314 GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_pred CCCEEEEECCHHHHHHCCCCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCC
T ss_conf 97239994377998750321478884282653189998999999998999873236957743899999999976502688
Q ss_pred CHHHHHHHHCCCH
Q ss_conf 9789998814577
Q gi|254780217|r 220 SVARAIKILHYDC 232 (347)
Q Consensus 220 s~~~A~~ll~~~~ 232 (347)
-|.+|+.+++...
T Consensus 394 lPDKAIdllDea~ 406 (758)
T PRK11034 394 LPDKAIDVIDEAG 406 (758)
T ss_pred CCHHHHHHHHHHH
T ss_conf 9619999999998
No 72
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.3e-08 Score=84.11 Aligned_cols=136 Identities=18% Similarity=0.299 Sum_probs=63.7
Q ss_pred HHHCCHHHHHHHHHHHHHCCCC--------CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CCCCHHHCCCCCCCHHHH
Q ss_conf 5610929999999999982889--------8166311798988899999999998177998-864312101267886799
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGRM--------HHALLFEGEQGIGKATLGFRYAGHVLQNPDF-SKAPVRMCNPDPCSPFVK 82 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~l--------~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~-~~~~~~~~~~~~~~~~~~ 82 (347)
..|+||++++..+.++++..|. --++||.||.|+|||-+|.++|..|+-.+.. ---...+.. -.|.+-+
T Consensus 491 ~rViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~--EkHsVSr 568 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYM--EKHSVSR 568 (786)
T ss_pred CCEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHH--HHHHHHH
T ss_conf 65017399999999999998569999998735788667886569999999999965997444554568777--7877998
Q ss_pred HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-----
Q ss_conf 996789875453001000101342123237887554431022211112103532205542400014567776630-----
Q gi|254780217|r 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP----- 157 (347)
Q Consensus 83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP----- 157 (347)
+| |+-|.|.=. ++ +| .|-+.+..+| |-|+++|++|+=+..-.|.||-.|++=
T Consensus 569 LI--GaPPGYVGy----ee-GG------------~LTEaVRr~P----ySViLlDEIEKAHpdV~nilLQVlDdGrLTD~ 625 (786)
T COG0542 569 LI--GAPPGYVGY----EE-GG------------QLTEAVRRKP----YSVILLDEIEKAHPDVFNLLLQVLDDGRLTDG 625 (786)
T ss_pred HH--CCCCCCCEE----CC-CC------------CHHHHHHCCC----CEEEEECHHHHCCHHHHHHHHHHHCCCCEECC
T ss_conf 72--799987200----65-54------------0037660699----86888412644088999999998467805548
Q ss_pred ------CCCCCEEEEECCCCC
Q ss_conf ------343416765044335
Q gi|254780217|r 158 ------PQKVLFILISHASPT 172 (347)
Q Consensus 158 ------p~~t~fiLit~~~~~ 172 (347)
=+||++|++||=-..
T Consensus 626 ~Gr~VdFrNtiIImTSN~Gs~ 646 (786)
T COG0542 626 QGRTVDFRNTIIIMTSNAGSE 646 (786)
T ss_pred CCCEEECCEEEEEEECCCCHH
T ss_conf 998884300289984502659
No 73
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.93 E-value=3.6e-08 Score=85.38 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=125.5
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCC
Q ss_conf 56561092999999999998288981663117989888999999999981779988643121012678867999967898
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~h 89 (347)
..+.|+|.+..++.+...+...+=.+ -++.|+||+|||..+..+|+.|.....+..- ...
T Consensus 171 klDpviGRd~Ei~r~i~IL~Rr~KNN-piLVGepGVGKTAIvEGLA~rI~~g~VP~~L----~~~--------------- 230 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNN-PVLIGEPGVGKTAIVEGLAQRIVNGDVPESL----KNK--------------- 230 (852)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCC-CCEECCCCCCHHHHHHHHHHHHHCCCCCHHH----HHC---------------
T ss_conf 99977383699999999998732489-7212799987999999999998669999788----518---------------
Q ss_pred CCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC--------CHHHHHHHHHHHHHCCCCC
Q ss_conf 75453001000101342123237887554431022211112103532205542--------4000145677766303434
Q gi|254780217|r 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM--------NRNAANALLKSLEEPPQKV 161 (347)
Q Consensus 90 pd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~l--------n~~AaNALLK~LEEPp~~t 161 (347)
.++.++...--.+-+.+..- =+-++.+++.+..++ +.=|.+||++|.+ +.+|+|-|--.|-. ..-
T Consensus 231 -~i~~LDlg~LvAGtkyRGeF-EeRlk~ii~ev~~~~---~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLar--Gel 303 (852)
T TIGR03346 231 -RLLALDMGALIAGAKYRGEF-EERLKAVLNEVTKSE---GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GEL 303 (852)
T ss_pred -CCEEEEHHHHHCCCCCCHHH-HHHHHHHHHHHHHCC---CCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHC--CCC
T ss_conf -51275288775215300789-999999999998589---98799961255532688766641067774378747--985
Q ss_pred CEEEEECCCC--CC---CHHHHCEEEEEECCCCCHHHHHHHHHH--------HCCCCCHHHHHHHHHHCCC------CHH
Q ss_conf 1676504433--57---302520369886479998999999997--------2788896789999997598------978
Q gi|254780217|r 162 LFILISHASP--TI---LSTIRSRCLSIKFNSLSENNLYKALEQ--------LKIMGWDSKRDFVKIAAYG------SVA 222 (347)
Q Consensus 162 ~fiLit~~~~--~i---l~TI~SRc~~i~f~~l~~~~~~~~L~~--------~~~~~~~~~~~~~~~~s~G------s~~ 222 (347)
.+|=.|+..+ +. -+.+--|.|.+.+..|+.++...+|.. .+..+.++++..+..+|.- =|.
T Consensus 304 r~IgATT~~EYrk~iEkD~AL~RRFq~I~V~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~RYi~~R~LPD 383 (852)
T TIGR03346 304 HCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPD 383 (852)
T ss_pred EEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 59982789999988322688997377120479986899999997699997627926739999999997134667788961
Q ss_pred HHHHHHCCCH
Q ss_conf 9998814577
Q gi|254780217|r 223 RAIKILHYDC 232 (347)
Q Consensus 223 ~A~~ll~~~~ 232 (347)
+|+.+++...
T Consensus 384 KAIDlLDeA~ 393 (852)
T TIGR03346 384 KAIDLIDEAA 393 (852)
T ss_pred HHHHHHHHHH
T ss_conf 8999999999
No 74
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.92 E-value=1.6e-08 Score=88.21 Aligned_cols=194 Identities=14% Similarity=0.142 Sum_probs=120.9
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC-CHHHCCCCCCCHHHHHHHCCC
Q ss_conf 5656109299999999999828898166311798988899999999998177998864-312101267886799996789
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA-PVRMCNPDPCSPFVKQMASHA 88 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 88 (347)
.++.|+|-++.++.+...+...+=.+ -++.|+||+|||..|..+|+.|.....+..- .+..++- +...+.+|+
T Consensus 185 klDPvIGRd~EI~r~iqIL~Rr~KNN-PiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sL-----Dlg~LvAGt 258 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQNN-PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL-----DLGLLQAGA 258 (852)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEE-----EHHHHHHCC
T ss_conf 99988694999999999998624799-746579998799999999999976999867743856786-----788886403
Q ss_pred CCCEEEECCCCHHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--------HHHHHHHHHHHHHCCC
Q ss_conf 8754530010001013421232378-875544310222111121035322055424--------0001456777663034
Q gi|254780217|r 89 LHDFLYLSYSLNPKTGKWRTVITVD-EIRRIRYFLSLTANTGYWRVIMIDPVDGMN--------RNAANALLKSLEEPPQ 159 (347)
Q Consensus 89 hpd~~~i~~~~~~k~~~~~~~I~vd-~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln--------~~AaNALLK~LEEPp~ 159 (347)
+.+.. -+ -+..+++.+..++ +.=|.+||++|.+- .+|+|-|--.|=. .
T Consensus 259 ----------------kyRGe--FEeRlk~ii~ei~~~~---~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLar--G 315 (852)
T TIGR03345 259 ----------------SVKGE--FENRLKSVIDEVKASP---QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--G 315 (852)
T ss_pred ----------------CCCCH--HHHHHHHHHHHHHHCC---CCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHC--C
T ss_conf ----------------57635--9999999999998489---97699963487752899888862278875178737--8
Q ss_pred CCCEEEEECCCC--CC---CHHHHCEEEEEECCCCCHHHHHHHHHH--------HCCCCCHHHHHHHHHHCCC------C
Q ss_conf 341676504433--57---302520369886479998999999997--------2788896789999997598------9
Q gi|254780217|r 160 KVLFILISHASP--TI---LSTIRSRCLSIKFNSLSENNLYKALEQ--------LKIMGWDSKRDFVKIAAYG------S 220 (347)
Q Consensus 160 ~t~fiLit~~~~--~i---l~TI~SRc~~i~f~~l~~~~~~~~L~~--------~~~~~~~~~~~~~~~~s~G------s 220 (347)
.-.+|-.|+.-+ +. -+.+--|.|.+.+..|+.++...+|.. .+..+.++++..+..+|.- =
T Consensus 316 elr~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI~dR~L 395 (852)
T TIGR03345 316 ELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQL 395 (852)
T ss_pred CCEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCC
T ss_conf 73499835789998886426889962475527999879999999987999855479687089999999998721554558
Q ss_pred HHHHHHHHCCCH
Q ss_conf 789998814577
Q gi|254780217|r 221 VARAIKILHYDC 232 (347)
Q Consensus 221 ~~~A~~ll~~~~ 232 (347)
|.+|+.+++...
T Consensus 396 PDKAIDLlDeA~ 407 (852)
T TIGR03345 396 PDKAVSLLDTAC 407 (852)
T ss_pred CHHHHHHHHHHH
T ss_conf 427899999999
No 75
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.92 E-value=1.7e-08 Score=87.97 Aligned_cols=206 Identities=17% Similarity=0.171 Sum_probs=136.0
Q ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC-CCHHHHH
Q ss_conf 555875656109299999999999828898166311798988899999999998177998864312101267-8867999
Q gi|254780217|r 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP-CSPFVKQ 83 (347)
Q Consensus 5 ~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~-~~~~~~~ 83 (347)
.+.|..|..=-.|+++...|.-.+..++-. .+++|++|+|||++.+.+++.+-.... ..+....+.. .....+.
T Consensus 16 ~pd~~~~y~s~~h~~al~~L~~~l~~~~g~--~lltGe~GtGKTtllr~l~~~l~~~~~---~~~~i~~~~l~~~~ll~~ 90 (269)
T TIGR03015 16 LPDPDFFYPSKGHKRAMAYLEYGLSQREGF--ILITGEVGAGKTTLIRNLLKRLDQERV---VAAKLVNTRVDAEDLLRM 90 (269)
T ss_pred CCCHHHCCCCHHHHHHHHHHHHHHHCCCCE--EEEECCCCCCHHHHHHHHHHHCCCCCE---EEEEECCCCCCHHHHHHH
T ss_conf 998454147866999999999999648965--999729989889999999984593454---899976999999999999
Q ss_pred HHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH--HHHCCCCC
Q ss_conf 9678987545300100010134212323788755443102221111210353220554240001456777--66303434
Q gi|254780217|r 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS--LEEPPQKV 161 (347)
Q Consensus 84 i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~--LEEPp~~t 161 (347)
+...- ...... . =..+-.|.+.+++......|+.=|+|||+|+.|+.++...|.-. +|....+-
T Consensus 91 i~~~l-------g~~~~~---~----~~~~~~~~l~~~L~~~~~~g~~~vliIDEAq~L~~~~Le~Lr~L~n~e~~~~~l 156 (269)
T TIGR03015 91 VAADF-------GLETEG---R----DKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKL 156 (269)
T ss_pred HHHHC-------CCCCCC---C----CHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 99985-------989889---8----999999999999999996699469997242219999999999997013588870
Q ss_pred CEEEEECCCC---C----CCHHHHCEE-EEEECCCCCHHHHHHHHHHH----C----CCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 1676504433---5----730252036-98864799989999999972----7----88896789999997598978999
Q gi|254780217|r 162 LFILISHASP---T----ILSTIRSRC-LSIKFNSLSENNLYKALEQL----K----IMGWDSKRDFVKIAAYGSVARAI 225 (347)
Q Consensus 162 ~fiLit~~~~---~----il~TI~SRc-~~i~f~~l~~~~~~~~L~~~----~----~~~~~~~~~~~~~~s~Gs~~~A~ 225 (347)
+-++.+-+|+ + -++.+++|- ..+++.|++.+++..++..- + .-..+++...+...|.|.||..=
T Consensus 157 l~iiL~GqpeL~~~L~~~~~~~l~qRI~~~~~L~pl~~eet~~YI~~RL~~AG~~~~~~Ft~~A~~~I~~~S~G~PR~IN 236 (269)
T TIGR03015 157 LQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLIN 236 (269)
T ss_pred EEEEEECCHHHHHHHCCCCHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 48999578679998727402545550767998479998999999999998669999998599999999998699008999
Q ss_pred HHHC
Q ss_conf 8814
Q gi|254780217|r 226 KILH 229 (347)
Q Consensus 226 ~ll~ 229 (347)
.+.+
T Consensus 237 ~Lc~ 240 (269)
T TIGR03015 237 ILCD 240 (269)
T ss_pred HHHH
T ss_conf 9999
No 76
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.89 E-value=5.5e-08 Score=83.98 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=126.6
Q ss_pred CCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCC
Q ss_conf 75656109299999999999828898166311798988899999999998177998864312101267886799996789
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (347)
-..+.|+|.++.++.+...+...+=.+ -++.|+||+|||..+..+|+.|.....+.. ....
T Consensus 175 gkldpvIGRd~EI~r~i~IL~RR~KNN-piLvGepGVGKTAIvEGLA~rI~~g~VP~~----L~~~-------------- 235 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPEG----LKGR-------------- 235 (857)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCC-CEEECCCCCCHHHHHHHHHHHHHCCCCCHH----HCCC--------------
T ss_conf 999988582999999999970257899-758789998899999999999983899978----8169--------------
Q ss_pred CCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC--------CHHHHHHHHHHHHHCCCC
Q ss_conf 875453001000101342123237887554431022211112103532205542--------400014567776630343
Q gi|254780217|r 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM--------NRNAANALLKSLEEPPQK 160 (347)
Q Consensus 89 hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~l--------n~~AaNALLK~LEEPp~~ 160 (347)
.++.++...--.+-+.+... =+-+..+++.+..+ .+.=|.+||++|.+ +.+|+|-|--.|-. ..
T Consensus 236 --~I~~LDlg~L~AGakyRGeF-EeRLk~il~ev~~~---~~~iILFIDEiHtlvGaG~~~G~~DaaNlLKPaLaR--Ge 307 (857)
T PRK10865 236 --RVLALDMGALVAGAKYRGEF-EERLKGVLNDLAKQ---EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GE 307 (857)
T ss_pred --CEEEEEHHHHHHCCCCCHHH-HHHHHHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHC--CC
T ss_conf --02473388786147652117-99999999999847---898699973435433688777753478886788737--98
Q ss_pred CCEEEEECCCC--CC---CHHHHCEEEEEECCCCCHHHHHHHHHH--------HCCCCCHHHHHHHHHHCCC------CH
Q ss_conf 41676504433--57---302520369886479998999999997--------2788896789999997598------97
Q gi|254780217|r 161 VLFILISHASP--TI---LSTIRSRCLSIKFNSLSENNLYKALEQ--------LKIMGWDSKRDFVKIAAYG------SV 221 (347)
Q Consensus 161 t~fiLit~~~~--~i---l~TI~SRc~~i~f~~l~~~~~~~~L~~--------~~~~~~~~~~~~~~~~s~G------s~ 221 (347)
-.+|-.|+.-+ +. -+.+--|.|.+.+..|+.++...+|.. .+..+.++++..+..+|.- =|
T Consensus 308 lr~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~e~ti~ILrgl~~~yE~hH~V~itdeAl~aAV~LS~RYI~dR~LP 387 (857)
T PRK10865 308 LHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLP 387 (857)
T ss_pred CEEEEECCHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCCCC
T ss_conf 54999458999998713458899853710068998799999999888899873791587999999999862456666781
Q ss_pred HHHHHHHCCCH
Q ss_conf 89998814577
Q gi|254780217|r 222 ARAIKILHYDC 232 (347)
Q Consensus 222 ~~A~~ll~~~~ 232 (347)
.+|+.+++...
T Consensus 388 DKAIDLLDeA~ 398 (857)
T PRK10865 388 DKAIDLIDEAA 398 (857)
T ss_pred HHHHHHHHHHH
T ss_conf 48988999998
No 77
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=98.88 E-value=4.3e-09 Score=92.84 Aligned_cols=115 Identities=23% Similarity=0.200 Sum_probs=72.3
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHH
Q ss_conf 63117989888999999999981779988643121012678867999967898754530010001013421232378875
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR 116 (347)
+|||||||+||+++|+++|+.+-.. .-.. +-+++. .. +. + -+.+.++
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~-------~~~v---------------~~~~~~--~~-~~---g-----~~~~~i~ 47 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAP-------FIEI---------------SGSELV--SK-YV---G-----ESEKRLR 47 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCC-------CEEC---------------CCCCCC--CC-CC---C-----HHHHHHH
T ss_conf 9878999999999999999997898-------5332---------------420122--23-34---5-----0688899
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHCCHH-----------HHHHHHHHHHH---CCCCCCEEEEECCCCCCCHHHH-CEE
Q ss_conf 54431022211112103532205542400-----------01456777663---0343416765044335730252-036
Q gi|254780217|r 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRN-----------AANALLKSLEE---PPQKVLFILISHASPTILSTIR-SRC 181 (347)
Q Consensus 117 ~l~~~~~~~~~~~~~Ki~IId~ad~ln~~-----------AaNALLK~LEE---Pp~~t~fiLit~~~~~il~TI~-SRc 181 (347)
.+.+.... ....|++|||+|.+..+ +.++||..|+. +..+.+||.+||++++|.|-++ |||
T Consensus 48 ~~f~~a~~----~~p~Il~iDe~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~~ld~al~r~Rf 123 (131)
T pfam00004 48 ELFEAAKK----LAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLRGRF 123 (131)
T ss_pred HHHHHHHH----CCCCEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHCCCC
T ss_conf 99999997----49918983116777516788888751326878999985022468876999975990449977962833
Q ss_pred EEEECCC
Q ss_conf 9886479
Q gi|254780217|r 182 LSIKFNS 188 (347)
Q Consensus 182 ~~i~f~~ 188 (347)
..+-.-|
T Consensus 124 d~~i~~p 130 (131)
T pfam00004 124 DRIIEFP 130 (131)
T ss_pred EEEEEEC
T ss_conf 2899806
No 78
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.86 E-value=4.5e-08 Score=84.63 Aligned_cols=185 Identities=15% Similarity=0.193 Sum_probs=116.9
Q ss_pred CCCHHHHCCHHHHHHHHHHHHH-----------CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 8756561092999999999998-----------28898166311798988899999999998177998864312101267
Q gi|254780217|r 8 PVYNQRLFGHEDIEKFLSQYYC-----------SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 8 p~~~~~i~G~~~~~~~L~~~~~-----------~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
...|+||.|.+++++.|..... ..|+|-+.|++||||+|||.+|+++|.. .+.|.-.++
T Consensus 148 ~vtF~DVaG~~eaK~el~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgE-------a~vpF~~~s--- 217 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE-------AKVPFFTIS--- 217 (644)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCC-------CCCEEEEEE---
T ss_conf 8771040897899999999999812979999749979985177798998778999998645-------598089978---
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-------------
Q ss_conf 8867999967898754530010001013421232378875544310222111121035322055424-------------
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN------------- 143 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln------------- 143 (347)
.+++...-. -.+-.-||++=+.... ..-.|++||++|.+-
T Consensus 218 ------------gsef~e~~v-----------Gvga~rVR~lF~~Ar~----~aP~IIFIDEiDaig~~R~~~~~gg~~e 270 (644)
T PRK10733 218 ------------GSDFVEMFV-----------GVGASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDE 270 (644)
T ss_pred ------------HHHHHHEEE-----------ECCHHHHHHHHHHHHH----CCCEEEEEECHHCCCCCCCCCCCCCCHH
T ss_conf ------------477302225-----------3068999999999996----6997999953220366678988898328
Q ss_pred -HHHHHHHHHHHH--HCCCCCCEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHHHHCCC---CCHHHHHHHH
Q ss_conf -000145677766--303434167650443357302520--36-98864799989999999972788---8967899999
Q gi|254780217|r 144 -RNAANALLKSLE--EPPQKVLFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALEQLKIM---GWDSKRDFVK 214 (347)
Q Consensus 144 -~~AaNALLK~LE--EPp~~t~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~~~~~~---~~~~~~~~~~ 214 (347)
.+.-|.||--|. ++..+++.|-.||.|+.|-|.++- |- +++.+..|+.+.-.++|+-...+ .++-....++
T Consensus 271 ~~~tlNqlL~EmDGf~~~~~ViviaATNrpd~LD~ALlRPGRFDr~I~V~lPd~~~R~~ILkvh~~~~~l~~dvdl~~lA 350 (644)
T PRK10733 271 REQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA 350 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 88789999999548888787699962699755477771688865599977989889999999996488777311589884
Q ss_pred HHCCCCHHHHH-HHHC
Q ss_conf 97598978999-8814
Q gi|254780217|r 215 IAAYGSVARAI-KILH 229 (347)
Q Consensus 215 ~~s~Gs~~~A~-~ll~ 229 (347)
..+.|--|..+ ++++
T Consensus 351 ~~T~GfSGADLaNlvN 366 (644)
T PRK10733 351 RGTPGFSGADLANLVN 366 (644)
T ss_pred CCCCCCCHHHHCCHHH
T ss_conf 4599867033325999
No 79
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.85 E-value=3.4e-07 Score=77.58 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=114.1
Q ss_pred CCHHHHCC--HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHC
Q ss_conf 75656109--2999999999998288981663117989888999999999981779988643121012678867999967
Q gi|254780217|r 9 VYNQRLFG--HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS 86 (347)
Q Consensus 9 ~~~~~i~G--~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (347)
.+|+++++ ...+...+.+...... .+.+.+|||+|+|||.++.+++......
T Consensus 12 ~tfdnFi~~~N~~~~~~l~~~~~~~~-~~~l~i~G~~GsGKTHLl~a~~~~~~~~------------------------- 65 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAGKG-DRFLYLWGESGSGKSHLLQAACAAAEER------------------------- 65 (226)
T ss_pred CCHHCCCCCCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHHCC-------------------------
T ss_conf 76312365867999999998764668-8869998999998899999999998626-------------------------
Q ss_pred CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHCCC-CCCE
Q ss_conf 8987545300100010134212323788755443102221111210353220554240--001456777663034-3416
Q gi|254780217|r 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEPPQ-KVLF 163 (347)
Q Consensus 87 ~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEPp~-~t~f 163 (347)
....++++...- .+...++.+.+ ...-+++||++|.+.. ..+.+|..++-.--. +..+
T Consensus 66 --~~~~~yl~~~~~-----------~~~~~~~l~~l------~~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~i 126 (226)
T TIGR03420 66 --GKSAIYLPLAEL-----------AQADPEVLEGL------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRL 126 (226)
T ss_pred --CCCEEEECHHHH-----------HHHHHHHHHHC------CCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCEE
T ss_conf --995799529998-----------77539999727------44899999663334378378999999999998652828
Q ss_pred EEEECCCCC----CCHHHHCE---EEEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 765044335----73025203---69886479998999999997----27888967899999975989789998814
Q gi|254780217|r 164 ILISHASPT----ILSTIRSR---CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 164 iLit~~~~~----il~TI~SR---c~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
+++++.+-. .+|-++|| +..+.+.+|+.++...+|.+ .+...+++..++++.-...+++....+++
T Consensus 127 lits~~~p~~l~~~l~dL~SRl~~~~~~~I~~pdd~~~~~iL~k~~~~r~i~i~~~vi~yl~~r~~R~~~~l~~~l~ 203 (226)
T TIGR03420 127 LIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred EEECCCCHHHCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 98678882320320177999996885685279999999999999999859988999999999863798999999999
No 80
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=98.83 E-value=9.9e-06 Score=65.79 Aligned_cols=169 Identities=9% Similarity=0.061 Sum_probs=117.8
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHH
Q ss_conf 99999998288981663117989888999999999981779988643121012678867999967898754530010001
Q gi|254780217|r 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNP 101 (347)
Q Consensus 22 ~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~ 101 (347)
+.|++.++++ +++.|||||+.--=+......+...+..... ...++..++
T Consensus 5 ~~l~~~lkk~-l~pvyli~G~e~~li~~~~~~i~~~~~~~~~------------------------~~~n~~~~d----- 54 (336)
T PRK05574 5 EQLEAHLKKG-LAPVYLLYGDEPLLLQEAKDAIRAAARAQGF------------------------DERNVFTVD----- 54 (336)
T ss_pred HHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCC------------------------CCEEEEEEE-----
T ss_conf 9999998278-9867999858699999999999998607786------------------------530589971-----
Q ss_pred HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH----HHHHHHHHHHHHCCCCCCEEEEECCCC------
Q ss_conf 0134212323788755443102221111210353220554240----001456777663034341676504433------
Q gi|254780217|r 102 KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR----NAANALLKSLEEPPQKVLFILISHASP------ 171 (347)
Q Consensus 102 k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----~AaNALLK~LEEPp~~t~fiLit~~~~------ 171 (347)
+....+ .++...+...|+.|++|+|||.+++.+.. .....|.+.++.||+.|.+++++....
T Consensus 55 -----~~~~~~---~~l~~~~~t~slf~~krlViv~~~~~~~~k~~~~~l~~l~~~l~~~~~~~~lvli~~~~~~d~~~k 126 (336)
T PRK05574 55 -----GSETDW---DDVLEACQSLPLFSDRKLVELRLPEGLTGKKGEEALKRLEAYLENPLPHTDLLLLAPLPKLDKRKE 126 (336)
T ss_pred -----CCCCCH---HHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHH
T ss_conf -----686999---999998648997789759999888766531137999999998707999976999987786336888
Q ss_pred --CCCHHHHCEEEEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf --57302520369886479998999999997----2788896789999997598978999881
Q gi|254780217|r 172 --TILSTIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKIL 228 (347)
Q Consensus 172 --~il~TI~SRc~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll 228 (347)
+...++..-+..+.|.++...++..|+.+ .+..+++++...++..+.|+.+.+.+-+
T Consensus 127 ~~k~~k~l~~~~~~i~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~El 189 (336)
T PRK05574 127 KSAWFKALKKKAVVVEAQTPKEAELPQWIQQRLKQQGLRIDAAALQLLAERVEGNLLALAQEI 189 (336)
T ss_pred HHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 899999998480799806999899999999999984999898999999997211399999999
No 81
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=98.77 E-value=1e-08 Score=89.89 Aligned_cols=137 Identities=23% Similarity=0.266 Sum_probs=89.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHH
Q ss_conf 66311798988899999999998177998864312101267886799996789875453001000101342123237887
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~I 115 (347)
=+-|+||||||||++|+.+|++|.=..- .-..|.....+.=+--|+-.-|+-|.
T Consensus 452 IlClvGPPGVGKTSlg~SIA~ALnRkFv--R~SlGG~~DeAEIrGHRRTYvGAMPG------------------------ 505 (941)
T TIGR00763 452 ILCLVGPPGVGKTSLGKSIAKALNRKFV--RFSLGGVRDEAEIRGHRRTYVGAMPG------------------------ 505 (941)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEE--EEEECCCEEHHHCCCCCCCCCCCCHH------------------------
T ss_conf 7872072695422278999999688049--99526722031127864320346725------------------------
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHCC--HHH----HHHHHHHHH-------------HCC--CCCC--EEEEECCCCC
Q ss_conf 5544310222111121035322055424--000----145677766-------------303--4341--6765044335
Q gi|254780217|r 116 RRIRYFLSLTANTGYWRVIMIDPVDGMN--RNA----ANALLKSLE-------------EPP--QKVL--FILISHASPT 172 (347)
Q Consensus 116 R~l~~~~~~~~~~~~~Ki~IId~ad~ln--~~A----aNALLK~LE-------------EPp--~~t~--fiLit~~~~~ 172 (347)
.|+.-+-.....++ |++||++|.|. .+- |-|||=.|= .|= ++++ ||.++|+.+.
T Consensus 506 -riiQ~lk~~~t~NP--l~LlDEIDK~~~~~~~~GDPaSALLEvLDPEQN~~F~DHYldvp~DLS~V~CyFi~TAN~~d~ 582 (941)
T TIGR00763 506 -RIIQGLKKAKTKNP--LILLDEIDKIGLKSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVLCYFIATANSIDT 582 (941)
T ss_pred -HHHHHHHHCCCCCC--EEEEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHEEECCCCCCC
T ss_conf -78999876041588--068620220016788655637888641286436042553002340042002100024475767
Q ss_pred CCHHHHCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 73025203698864799989999999972
Q gi|254780217|r 173 ILSTIRSRCLSIKFNSLSENNLYKALEQL 201 (347)
Q Consensus 173 il~TI~SRc~~i~f~~l~~~~~~~~L~~~ 201 (347)
||+++|-|-=.|.++.-..+|=.++-.++
T Consensus 583 IP~PLLDRMEvI~lsGY~~~EK~~IA~~y 611 (941)
T TIGR00763 583 IPRPLLDRMEVIELSGYTEEEKLEIAKKY 611 (941)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 77221374024523888767899999854
No 82
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.76 E-value=1.2e-05 Score=65.13 Aligned_cols=133 Identities=19% Similarity=0.294 Sum_probs=90.4
Q ss_pred HHHCCHHHHHHHHHHHHHCCC--------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CCCCHHHCCCCCCCHHHH
Q ss_conf 561092999999999998288--------98166311798988899999999998177998-864312101267886799
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR--------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDF-SKAPVRMCNPDPCSPFVK 82 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~--------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~-~~~~~~~~~~~~~~~~~~ 82 (347)
..|+||+++++.+.+++...| .--++||.||.|+|||.+|.++|..|+..... -...+.+... .|.+-+
T Consensus 568 ~rViGQd~AI~~v~~aI~~sraGL~dp~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDMSEy~E--~hsVSr 645 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME--KHSVSR 645 (857)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECCHHHCC--CHHHHH
T ss_conf 785280999999999999986389999997389998689878889999999999838933425625332113--012767
Q ss_pred HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC----
Q ss_conf 9967898754530010001013421232378875544310222111121035322055424000145677766303----
Q gi|254780217|r 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP---- 158 (347)
Q Consensus 83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp---- 158 (347)
. -|+-|.|.=++ + +| .-.+.| ..+| |-|+++|++|+-+.+-.|.||-+|.|--
T Consensus 646 L--iGaPPGYVGy~----e-GG-----~LTeaV-------Rr~P----ySVvLfDEIEKAHpdV~nilLQvlD~G~LtD~ 702 (857)
T PRK10865 646 L--VGAPPGYVGYE----E-GG-----YLTEAV-------RRRP----YSVILLDEVEKAHPDVFNILLQVLDDGRLTDG 702 (857)
T ss_pred H--CCCCCCCCCCC----C-CC-----CHHHHH-------HHCC----CEEEEEHHHHHHCHHHHHHHHHHHCCCEEECC
T ss_conf 5--58998766757----7-88-----110999-------8198----77886325766385899999987036832079
Q ss_pred -------CCCCEEEEECC
Q ss_conf -------43416765044
Q gi|254780217|r 159 -------QKVLFILISHA 169 (347)
Q Consensus 159 -------~~t~fiLit~~ 169 (347)
.||++||+||=
T Consensus 703 ~Gr~vdF~NtIIImTSN~ 720 (857)
T PRK10865 703 QGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred CCCEEEEEEEEEEECCCH
T ss_conf 998885133489964623
No 83
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.76 E-value=4.1e-07 Score=76.92 Aligned_cols=192 Identities=15% Similarity=0.162 Sum_probs=106.4
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC--CCCCCHHHCCCCCCCH
Q ss_conf 66555587565610929999999999982889816631179898889999999999817799--8864312101267886
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD--FSKAPVRMCNPDPCSP 79 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~--~~~~~~~~~~~~~~~~ 79 (347)
+++.+=| |+.|+||++++..|.-+.-..++.| .|+.|++|+||+|+|+++|.-|---.. .....|....++..+.
T Consensus 4 ~~~~~fP--f~aIvGQe~~k~aLll~av~p~iGg-VLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p~~p~~~~~ 80 (347)
T CHL00081 4 IARPVFP--FTAIVGQEEMKLALLLNVIDPKIGG-VMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDPRDPDLMSD 80 (347)
T ss_pred CCCCCCC--HHHHCCHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCH
T ss_conf 7778898--4065384999999999825788786-998789987499999999985787422068876789898100242
Q ss_pred HH-HHHHCCCCCCEEE-----ECCCCHHHCCCCCCCCCHHHHHHHHHH-CCCCC---CCCCCHHHHHHHHHHCCHHHHHH
Q ss_conf 79-9996789875453-----001000101342123237887554431-02221---11121035322055424000145
Q gi|254780217|r 80 FV-KQMASHALHDFLY-----LSYSLNPKTGKWRTVITVDEIRRIRYF-LSLTA---NTGYWRVIMIDPVDGMNRNAANA 149 (347)
Q Consensus 80 ~~-~~i~~~~hpd~~~-----i~~~~~~k~~~~~~~I~vd~IR~l~~~-~~~~~---~~~~~Ki~IId~ad~ln~~AaNA 149 (347)
.| ..+..+....... ++.+.+-...+.-..|-++. .+..- -...| ....+-|..||++..+...-+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~p~v~lPlgaTEDrv~GslDie~--al~~G~~~f~pGlLa~A~rGiLyvDEINll~d~~v~~ 158 (347)
T CHL00081 81 EVRERIRNGEKIPTKKIKIPMVDLPLGATEDRVCGTIDIEK--ALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDI 158 (347)
T ss_pred HHHHHHCCCCCCCCEECCCCEEECCCCCCCCEECCCHHHHH--HHHCCCCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHH
T ss_conf 66654314666752114686253688885230114000998--9845871156531222038858861454323799999
Q ss_pred HHHHHHHCCCCC------------CEEEE-ECCCC--CCCHHHHCEE-EEEECC-CCCHHHHHHHHH
Q ss_conf 677766303434------------16765-04433--5730252036-988647-999899999999
Q gi|254780217|r 150 LLKSLEEPPQKV------------LFILI-SHASP--TILSTIRSRC-LSIKFN-SLSENNLYKALE 199 (347)
Q Consensus 150 LLK~LEEPp~~t------------~fiLi-t~~~~--~il~TI~SRc-~~i~f~-~l~~~~~~~~L~ 199 (347)
||-.+++ ..++ .|+|+ |-||. .+.|-+.-|- ..+.+. +.+.++-.+++.
T Consensus 159 LLda~a~-G~~~VEReG~S~~~Pa~F~liaT~NPeEgeLrp~llDRF~l~v~v~~~~~~e~R~eiv~ 224 (347)
T CHL00081 159 LLDSAAS-GWNTVEREGISIRHPARFVLIGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVE 224 (347)
T ss_pred HHHHHHC-CEEEECCCCEEECCCCCEEEEECCCCCCCCCCHHHHHHEEEEEECCCCCCHHHHHHHHH
T ss_conf 9999855-80898046423305750068855786556748888826322674588789899999999
No 84
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=98.75 E-value=8.2e-06 Score=66.47 Aligned_cols=166 Identities=14% Similarity=0.111 Sum_probs=115.5
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCH
Q ss_conf 99999999828898166311798988899999999998177998864312101267886799996789875453001000
Q gi|254780217|r 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLN 100 (347)
Q Consensus 21 ~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~ 100 (347)
.+.|.+.+++|++|.+|||||+..-=-..++..++..+-+... . ..++++
T Consensus 3 k~e~d~~ik~~~~~~~ylLyG~d~fli~~y~~~I~~~~~~~~~-----------------~---------~~~yfd---- 52 (328)
T PRK08487 3 KKELDTLLKQNKLPNAFFLYGEDEFQIEYYAKEISSKFKPEEL-----------------L---------KELYFD---- 52 (328)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCH-----------------H---------HHCCCC----
T ss_conf 6899999865988845999568575899999999998577521-----------------1---------200226----
Q ss_pred HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC------C
Q ss_conf 1013421232378875544310222111121035322055424000145677766303434167650443357------3
Q gi|254780217|r 101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI------L 174 (347)
Q Consensus 101 ~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~i------l 174 (347)
+ ...++ +...+...|..|+.|+++|.....+.......|+..+|.||.+++++.......+- .
T Consensus 53 E--------~d~~~---i~~~l~~~sLFg~~klv~IK~~~ki~~k~l~~Li~~~~~~~~n~~Ii~~~~~~~k~~~~~k~~ 121 (328)
T PRK08487 53 E--------YNFSQ---AKDFLSQGSLFGGKNLLVIKTDKKIPKKELKLLIELCEKNSDNFFIIELYEASMKSSDTEKIF 121 (328)
T ss_pred C--------CCHHH---HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 5--------78899---999973515347774799957774552269999998628977789999706133456788877
Q ss_pred HHHHCEEEEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 02520369886479998999999997----2788896789999997598978999881
Q gi|254780217|r 175 STIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKIL 228 (347)
Q Consensus 175 ~TI~SRc~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll 228 (347)
++.. =+..++|-+++..++..|+.. .+..++++++..+.....++...+.+=+
T Consensus 122 ~~~~-~~~~V~ff~p~~~el~~~i~~~ak~~g~~Is~~al~~L~e~~g~dL~~~~nEL 178 (328)
T PRK08487 122 TPKF-IAKFVRFFKPNAWEALKLLQERAKELGLDIDQNALNHLFEIQNENLYLAANEL 178 (328)
T ss_pred HHHC-CEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 6633-62377513998689999999999991997799999999998596399999899
No 85
>KOG1970 consensus
Probab=98.74 E-value=4.5e-07 Score=76.58 Aligned_cols=204 Identities=15% Similarity=0.174 Sum_probs=118.8
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHH-----CCCCCE-EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC
Q ss_conf 55558756561092999999999998-----288981-663117989888999999999981779988643121012678
Q gi|254780217|r 4 RAFDPVYNQRLFGHEDIEKFLSQYYC-----SGRMHH-ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 (347)
Q Consensus 4 ~~~~p~~~~~i~G~~~~~~~L~~~~~-----~~~l~h-a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~ 77 (347)
.||+|+..+++.-|+.-+.....++. ...++| -+|++||.|+||+|+...+++-+--.--.-..|.. |
T Consensus 74 eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~-~----- 147 (634)
T KOG1970 74 EKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPIN-L----- 147 (634)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCC-C-----
T ss_conf 7608562888755177489999999999974536676079985798887131999999864802123047766-5-----
Q ss_pred CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHH---------CCCC--CCCCCCHHHHHHHHHHCCHH-
Q ss_conf 86799996789875453001000101342123237887554431---------0222--11112103532205542400-
Q gi|254780217|r 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYF---------LSLT--ANTGYWRVIMIDPVDGMNRN- 145 (347)
Q Consensus 78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~---------~~~~--~~~~~~Ki~IId~ad~ln~~- 145 (347)
+ .-...|-+-.... .. -.-+++....| +... -..++.|+++|++.-.....
T Consensus 148 ----~-~~~~~h~~t~~~~-------~~-----~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d 210 (634)
T KOG1970 148 ----K-EPENLHNETSFLM-------FP-----YQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD 210 (634)
T ss_pred ----C-CCCCCCCCCHHCC-------CC-----HHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEEEECCCHHHHHH
T ss_conf ----6-6555455440013-------30-----36678999989999876231653133334675079850261444003
Q ss_pred HH----HHHHHHHHHCCCCCCEEEEEC------CCCCCCH---HHHCEEEEEECCCCCHHHHHHHHHHH----CCCCC--
Q ss_conf 01----456777663034341676504------4335730---25203698864799989999999972----78889--
Q gi|254780217|r 146 AA----NALLKSLEEPPQKVLFILISH------ASPTILS---TIRSRCLSIKFNSLSENNLYKALEQL----KIMGW-- 206 (347)
Q Consensus 146 Aa----NALLK~LEEPp~~t~fiLit~------~~~~il~---TI~SRc~~i~f~~l~~~~~~~~L~~~----~~~~~-- 206 (347)
+. |-|....-+|---++||++-. +..++-+ +..-|.-.+.|+|+...-|++.|+.+ .....
T Consensus 211 ~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~ 290 (634)
T KOG1970 211 DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGI 290 (634)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHCHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 69999999999984577767999863535787634342426565335852476157767999999999999862666667
Q ss_pred ----HHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf ----678999999759897899988145
Q gi|254780217|r 207 ----DSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 207 ----~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
....+.+...+.|++|-|++.++-
T Consensus 291 k~~~~~~v~~i~~~s~GDIRsAInsLQl 318 (634)
T KOG1970 291 KVPDTAEVELICQGSGGDIRSAINSLQL 318 (634)
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 6750679999987527739999877533
No 86
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.71 E-value=8.7e-06 Score=66.26 Aligned_cols=134 Identities=19% Similarity=0.315 Sum_probs=90.3
Q ss_pred HHHCCHHHHHHHHHHHHHCCC--------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCC-CCCCCHHHCCCCCCCHHHH
Q ss_conf 561092999999999998288--------9816631179898889999999999817799-8864312101267886799
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR--------MHHALLFEGEQGIGKATLGFRYAGHVLQNPD-FSKAPVRMCNPDPCSPFVK 82 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~--------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~-~~~~~~~~~~~~~~~~~~~ 82 (347)
..|+||+++++.+.+++...| .--++||.||.|+|||.+|.++|..|+-.+. .-.-.+.++.. .|.+.+
T Consensus 565 ~rViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E--~hsvsr 642 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME--KHSVAR 642 (852)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCC--HHHHHH
T ss_conf 897170999999999999997188889997458998678877689999999999855852069843044301--224778
Q ss_pred HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC----
Q ss_conf 9967898754530010001013421232378875544310222111121035322055424000145677766303----
Q gi|254780217|r 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP---- 158 (347)
Q Consensus 83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp---- 158 (347)
. -|+-|.|.=.+ + +| .-.+.|| .+ +|-|+++|++|+-+.+-.|.||-+|+|=-
T Consensus 643 L--iGaPPGYVGy~----e-gG-----~Lte~vr-------~~----PysVvL~DEIEKAh~~V~~~lLQilD~G~ltD~ 699 (852)
T TIGR03346 643 L--IGAPPGYVGYE----E-GG-----QLTEAVR-------RK----PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG 699 (852)
T ss_pred H--CCCCCCCCCCC----C-CC-----EECHHHH-------HC----CCEEEEECCHHHHCHHHHHHHHHHHCCCEEECC
T ss_conf 5--58999767768----7-87-----4239898-------19----887998530543076899999988236743079
Q ss_pred -------CCCCEEEEECCC
Q ss_conf -------434167650443
Q gi|254780217|r 159 -------QKVLFILISHAS 170 (347)
Q Consensus 159 -------~~t~fiLit~~~ 170 (347)
.||++||+||=-
T Consensus 700 ~Gr~vdF~NtiiimTSN~G 718 (852)
T TIGR03346 700 QGRTVDFRNTVIIMTSNLG 718 (852)
T ss_pred CCCEEEEEEEEEEEECCCC
T ss_conf 9988853556898615406
No 87
>KOG0730 consensus
Probab=98.71 E-value=2.6e-06 Score=70.45 Aligned_cols=182 Identities=18% Similarity=0.121 Sum_probs=105.8
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHC-----------C-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCC
Q ss_conf 5587565610929999999999982-----------8-898166311798988899999999998177998864312101
Q gi|254780217|r 6 FDPVYNQRLFGHEDIEKFLSQYYCS-----------G-RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 (347)
Q Consensus 6 ~~p~~~~~i~G~~~~~~~L~~~~~~-----------~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~ 73 (347)
....+|++|=|++++++.|..++.- | ..|-+.|||||||+||+++|+++|..-=|+.-.-
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv-------- 499 (693)
T KOG0730 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV-------- 499 (693)
T ss_pred CCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEC--------
T ss_conf 788782204578999999999986166565999872578875477778998624789999864635872641--------
Q ss_pred CCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH-------
Q ss_conf 2678867999967898754530010001013421232378875544310222111121035322055424000-------
Q gi|254780217|r 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA------- 146 (347)
Q Consensus 74 ~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A------- 146 (347)
.-|.++- .|...+ =.-||++=......+ --|+.+|++|.+-.+=
T Consensus 500 --------------kgpEL~s---k~vGeS--------Er~ir~iF~kAR~~a----P~IiFfDEiDsi~~~R~g~~~~v 550 (693)
T KOG0730 500 --------------KGPELFS---KYVGES--------ERAIREVFRKARQVA----PCIIFFDEIDALAGSRGGSSSGV 550 (693)
T ss_pred --------------CCHHHHH---HHCCCH--------HHHHHHHHHHHHHCC----CEEEEHHHHHHHHHCCCCCCCCH
T ss_conf --------------5789987---751825--------899999999986269----83774466666663047875514
Q ss_pred ----HHHHHHHHH--HCCCCCCEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHHHHC--CCCCH-HHHHHHH
Q ss_conf ----145677766--303434167650443357302520--36-988647999899999999727--88896-7899999
Q gi|254780217|r 147 ----ANALLKSLE--EPPQKVLFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALEQLK--IMGWD-SKRDFVK 214 (347)
Q Consensus 147 ----aNALLK~LE--EPp~~t~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~~~~--~~~~~-~~~~~~~ 214 (347)
-|.||+-|- |--+++++|=.||.|+.|-+.+.+ |- +.+++.+++.+.-.++|+... ....+ -.++.++
T Consensus 551 ~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730 551 TDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 89999999987004101470899950588101269775986533057515834788999999997339998655699999
Q ss_pred HHCCCCHHHH
Q ss_conf 9759897899
Q gi|254780217|r 215 IAAYGSVARA 224 (347)
Q Consensus 215 ~~s~Gs~~~A 224 (347)
..++|--|.-
T Consensus 631 ~~T~g~SGAe 640 (693)
T KOG0730 631 QATEGYSGAE 640 (693)
T ss_pred HHHCCCCHHH
T ss_conf 9854677389
No 88
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=98.70 E-value=9.3e-07 Score=74.07 Aligned_cols=213 Identities=17% Similarity=0.181 Sum_probs=132.7
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHH---C-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCC-HHH----
Q ss_conf 96655558756561092999999999998---2-88981663117989888999999999981779988643-121----
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYC---S-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP-VRM---- 71 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~---~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~-~~~---- 71 (347)
||.--|-| -=+.|+|-++.++.|.++++ . |.-|..+++|||.|+|||..+..+.+.|--.....+.. +.-
T Consensus 7 ~L~~dY~P-den~i~hRdeqI~~l~~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~N 85 (383)
T TIGR02928 7 LLEPDYVP-DENRIVHRDEQIEELAKALRPILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYIN 85 (383)
T ss_pred CCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 37757702-74246686789999999988750674898725887888987889999999999998622699715899977
Q ss_pred CCCCC-CCHH----HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHH-HHHHHHCC-CCCCCCCCHHHHHHHHHHCCH
Q ss_conf 01267-8867----99996789875453001000101342123237887-55443102-221111210353220554240
Q gi|254780217|r 72 CNPDP-CSPF----VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI-RRIRYFLS-LTANTGYWRVIMIDPVDGMNR 144 (347)
Q Consensus 72 ~~~~~-~~~~----~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~I-R~l~~~~~-~~~~~~~~Ki~IId~ad~ln~ 144 (347)
|.... .-.+ +++++ ..+-+. +-+.+-++-+++ +.|.+.+. . .++.=|||+||+|.|=.
T Consensus 86 C~~~~T~y~~~~~L~~~ln-~~~~~~-----------~vP~tG~s~~~~~~~l~~~l~~~---~~~~~~ivLDEiD~Lv~ 150 (383)
T TIGR02928 86 CQILDTSYQVLVELANQLN-RRGSGE-----------EVPTTGLSTSEVFRELYKELNRE---RGDSLIIVLDEIDKLVR 150 (383)
T ss_pred CCCCCCHHHHHHHHHHHHC-CCCCCC-----------CCCCCCCCHHHHHHHHHHHHHHH---CCCEEEEEECCCCHHHC
T ss_conf 8546846999999999851-577888-----------89887787899999999998320---18879998623102215
Q ss_pred ----H-----HHHHHHHH--HHHCC-CCCCEEEEECCCC---CCCHHHHCEEE--EEECCCCCHHHHHHHHHHHC-C-CC
Q ss_conf ----0-----01456777--66303-4341676504433---57302520369--88647999899999999727-8-88
Q gi|254780217|r 145 ----N-----AANALLKS--LEEPP-QKVLFILISHASP---TILSTIRSRCL--SIKFNSLSENNLYKALEQLK-I-MG 205 (347)
Q Consensus 145 ----~-----AaNALLK~--LEEPp-~~t~fiLit~~~~---~il~TI~SRc~--~i~f~~l~~~~~~~~L~~~~-~-~~ 205 (347)
+ .-=.|+++ -++-. ...=.|-|||+.. .|=|=++|.-. .+.|+|-+.+++.++|++-. . .+
T Consensus 151 ~~~d~PAyS~~LY~L~Ra~~~~~~~~~~vgvIgISND~~f~~~Ld~RVkSsL~~eei~FpPYdA~eL~~IL~~R~v~~AF 230 (383)
T TIGR02928 151 KDDDDPAYSKLLYQLSRARENGDLENAKVGVIGISNDLKFRENLDPRVKSSLCEEEIVFPPYDAEELRDILENRAVEKAF 230 (383)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHCCCCEECCCCCCCCEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 88888078788534331000357788534899986571436445753013248740040798869999999720312033
Q ss_pred -----CHHHHH---HHHHHCCCCHHHHHHHHC
Q ss_conf -----967899---999975989789998814
Q gi|254780217|r 206 -----WDSKRD---FVKIAAYGSVARAIKILH 229 (347)
Q Consensus 206 -----~~~~~~---~~~~~s~Gs~~~A~~ll~ 229 (347)
.++.+. .++.-..|+.|+|+.++=
T Consensus 231 ~dGvl~d~VI~lcAA~aAq~hGDAR~AiDLLR 262 (383)
T TIGR02928 231 YDGVLDDGVIPLCAALAAQEHGDARKAIDLLR 262 (383)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 68854622799999986206787899999999
No 89
>KOG1051 consensus
Probab=98.67 E-value=2e-07 Score=79.47 Aligned_cols=137 Identities=20% Similarity=0.316 Sum_probs=93.2
Q ss_pred HHHCCHHHHHHHHHHHHHCCC-------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 561092999999999998288-------9816631179898889999999999817799886431210126788679999
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR-------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM 84 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~-------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i 84 (347)
..|+||++++..+..++..-| -.-.+||.||.|+||+-+|.++|.+++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg------------------------ 617 (898)
T KOG1051 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG------------------------ 617 (898)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCC------------------------
T ss_conf 54466377899999999843203578888858999788841389999999999728------------------------
Q ss_pred HCCCCCCEEEECCCC-HH--H-CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC---
Q ss_conf 678987545300100-01--0-1342123237887554431022211112103532205542400014567776630---
Q gi|254780217|r 85 ASHALHDFLYLSYSL-NP--K-TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP--- 157 (347)
Q Consensus 85 ~~~~hpd~~~i~~~~-~~--k-~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP--- 157 (347)
++++++.|+... .+ + .+....-..-++.-.+-+-+...| |-|+++|++|.-...-+|.||..||+=
T Consensus 618 ---se~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP----~sVvLfdeIEkAh~~v~n~llq~lD~Grlt 690 (898)
T KOG1051 618 ---SEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRP----YSVVLFEEIEKAHPDVLNILLQLLDRGRLT 690 (898)
T ss_pred ---CCCCEEEECHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC----CEEEEEECHHHCCHHHHHHHHHHHHCCCCC
T ss_conf ---8642689614555556530489955546305778889971699----659998302222888999999998627400
Q ss_pred --------CCCCCEEEEECCCCCCCHHHHC
Q ss_conf --------3434167650443357302520
Q gi|254780217|r 158 --------PQKVLFILISHASPTILSTIRS 179 (347)
Q Consensus 158 --------p~~t~fiLit~~~~~il~TI~S 179 (347)
=+|++||++++--...+.|=.+
T Consensus 691 Ds~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~ 720 (898)
T KOG1051 691 DSHGREVDFKNAIFIMTSNVGSSAIANDAS 720 (898)
T ss_pred CCCCCEEECCCEEEEEECCCCHHHHHCCCC
T ss_conf 588867504645999942631666640454
No 90
>KOG0743 consensus
Probab=98.67 E-value=2.2e-06 Score=71.07 Aligned_cols=151 Identities=14% Similarity=0.175 Sum_probs=89.6
Q ss_pred CCCCCHHHHCCHHHHHHHHH----HHHHCCC----C----CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCC
Q ss_conf 55875656109299999999----9998288----9----8166311798988899999999998177998864312101
Q gi|254780217|r 6 FDPVYNQRLFGHEDIEKFLS----QYYCSGR----M----HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 (347)
Q Consensus 6 ~~p~~~~~i~G~~~~~~~L~----~~~~~~~----l----~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~ 73 (347)
-||+.|+.++=..+.++.+. ...+... . -.+||+|||||+||+++.-++|.+|- .
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~---------y---- 261 (457)
T KOG0743 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN---------Y---- 261 (457)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCC---------C----
T ss_conf 999874420148667899999999997223578864845000412047999988899999972058---------7----
Q ss_pred CCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC---CH------
Q ss_conf 267886799996789875453001000101342123237887554431022211112103532205542---40------
Q gi|254780217|r 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM---NR------ 144 (347)
Q Consensus 74 ~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~l---n~------ 144 (347)
|++.++.... =.-+|.|.|.. .+|. .-|++|+++|.= +.
T Consensus 262 -----------------dIydLeLt~v---------~~n~dLr~LL~---~t~~---kSIivIEDIDcs~~l~~~~~~~~ 309 (457)
T KOG0743 262 -----------------DIYDLELTEV---------KLDSDLRHLLL---ATPN---KSILLIEDIDCSFDLRERRKKKK 309 (457)
T ss_pred -----------------CEEEEEECCC---------CCCHHHHHHHH---HCCC---CCEEEEEECCCCCCCCCCCCCCC
T ss_conf -----------------3677440023---------68389999997---2899---71899961243230443455566
Q ss_pred ---------HHHHHHHHHHHHCCCCC----CEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHHHH
Q ss_conf ---------00145677766303434----167650443357302520--36-98864799989999999972
Q gi|254780217|r 145 ---------NAANALLKSLEEPPQKV----LFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALEQL 201 (347)
Q Consensus 145 ---------~AaNALLK~LEEPp~~t----~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~~~ 201 (347)
=..--||-.+--.=+.+ ++|++||++++|-|++.- |. .++.+..=+.+.++...+..
T Consensus 310 ~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nY 382 (457)
T KOG0743 310 ENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNY 382 (457)
T ss_pred CCCCCCCCEEEHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 4546776606647756641343004887349999468710068866288752256672669879999999983
No 91
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.67 E-value=7.1e-07 Score=74.98 Aligned_cols=187 Identities=11% Similarity=0.080 Sum_probs=115.9
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHH---HHHC-----C-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 96655558756561092999999999---9982-----8-8981663117989888999999999981779988643121
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQ---YYCS-----G-RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM 71 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~---~~~~-----~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~ 71 (347)
+|+..+-..+|++|=|-++.++-|.. ++.. | +.|-++|++||||+||+.+|.++|...-. |.-.
T Consensus 217 ~Le~~~~~~~~~~vGGl~~lK~wl~~r~~~f~~~a~~~gl~~PkGvLL~GpPG~GKtl~AKAvA~e~~~-------p~l~ 289 (491)
T CHL00195 217 ILEFYSVNEKISDIGGLDNLKDWLKKRSTSFSKQAENYGLPTPRGLLLVGIQGTGKSLTAKAIANEWNL-------PLLR 289 (491)
T ss_pred CEEEEECCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------CEEE
T ss_conf 658874899804146889999999998898623366459999987999799998789999999866389-------4699
Q ss_pred CCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--------
Q ss_conf 012678867999967898754530010001013421232378875544310222111121035322055424--------
Q gi|254780217|r 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-------- 143 (347)
Q Consensus 72 ~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-------- 143 (347)
... ..+.++ ++. . +=..+|++...... ..--|+.||++|.+=
T Consensus 290 l~~-------~~l~~~------~vG-----e--------sE~~~r~~f~~A~~----~aP~ilfiDEidk~~~~~~~~~d 339 (491)
T CHL00195 290 LDV-------GKLFGG------IVG-----E--------SESRMRQMIQLAET----ISPCILWIDEIDKAFSGLDSKGD 339 (491)
T ss_pred EEH-------HHHHHH------HCC-----H--------HHHHHHHHHHHHHH----HCCEEEEEEHHHHHCCCCCCCCC
T ss_conf 667-------997560------067-----0--------49999999999986----19858997465454258888888
Q ss_pred ----HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHC--EEE-EEECCCCCHHHHHHHHHHH----CCC-CCHHHHH
Q ss_conf ----000145677766303434167650443357302520--369-8864799989999999972----788-8967899
Q gi|254780217|r 144 ----RNAANALLKSLEEPPQKVLFILISHASPTILSTIRS--RCL-SIKFNSLSENNLYKALEQL----KIM-GWDSKRD 211 (347)
Q Consensus 144 ----~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~S--Rc~-~i~f~~l~~~~~~~~L~~~----~~~-~~~~~~~ 211 (347)
..-.+.||.-|-|-.+.++++-+||+++.++|-+.- |-- .|.+..|+.++-.++++-. ... ..+....
T Consensus 340 ~g~s~rv~~~~Lt~m~e~~~~VfViattN~~~~L~pellR~GRFD~~~~v~lP~~~~R~~I~~ihl~~~~~~~~~~~d~~ 419 (491)
T CHL00195 340 SGTSNRVLATFITWLSEKKSPVFVVATANNIDSLPLELLRKGRFDEIFFLDLPNLEERELIFKIHLKRFRPNSWQNYDIE 419 (491)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 72328999999998646899769999589975589877089877704764895989999999999854478875546999
Q ss_pred HHHHHCCCCHHHH
Q ss_conf 9999759897899
Q gi|254780217|r 212 FVKIAAYGSVARA 224 (347)
Q Consensus 212 ~~~~~s~Gs~~~A 224 (347)
.++..++|=-|.-
T Consensus 420 ~la~~t~gfsGAe 432 (491)
T CHL00195 420 ILSQLTNKFSGAE 432 (491)
T ss_pred HHHHHCCCCCHHH
T ss_conf 9997685988899
No 92
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=7.8e-07 Score=74.68 Aligned_cols=208 Identities=19% Similarity=0.168 Sum_probs=125.2
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC-C
Q ss_conf 6555587565610929999999999982---88981663117989888999999999981779988643121012678-8
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCS---GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-S 78 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~~---~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~-~ 78 (347)
..-|-|.. +.+-+...+++...+.. |-.|+..++|||+|+|||.+++.+++.+-.........--.|..... .
T Consensus 11 ~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 11 LEDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred CCCCCCHH---CCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHH
T ss_conf 75558220---103488999999999998558998607998899987328999999999733156757999513078787
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH--
Q ss_conf 67999967898754530010001013421232378875-544310222111121035322055424000145677766--
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE-- 155 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR-~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE-- 155 (347)
.+..++.+. -++.....++..++= .+.+.+.. .++.=|+|+|++|.|-...+..|..++.
T Consensus 88 ~i~~~i~~~--------------~~~~p~~g~~~~~~~~~l~~~~~~---~~~~~IvvLDEid~L~~~~~~~LY~L~r~~ 150 (366)
T COG1474 88 QVLSKILNK--------------LGKVPLTGDSSLEILKRLYDNLSK---KGKTVIVILDEVDALVDKDGEVLYSLLRAP 150 (366)
T ss_pred HHHHHHHHH--------------HCCCCCCCCCHHHHHHHHHHHHHH---CCCEEEEEECCHHHHHCCCCCHHHHEECCC
T ss_conf 999999998--------------268997676326899999997774---187599997647654154641455111247
Q ss_pred -HCCCCCCEEEEECCC---CCCCHHHHCEEEE--EECCCCCHHHHHHHHHHH------CCCCCHHHHHHHH---HHCCCC
Q ss_conf -303434167650443---3573025203698--864799989999999972------7888967899999---975989
Q gi|254780217|r 156 -EPPQKVLFILISHAS---PTILSTIRSRCLS--IKFNSLSENNLYKALEQL------KIMGWDSKRDFVK---IAAYGS 220 (347)
Q Consensus 156 -EPp~~t~fiLit~~~---~~il~TI~SRc~~--i~f~~l~~~~~~~~L~~~------~~~~~~~~~~~~~---~~s~Gs 220 (347)
++-.++.+|.+++.. ..+.|-|+||-.. +.|+|-+.+++.++|.+- ...+.+.....++ ....|+
T Consensus 151 ~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GD 230 (366)
T COG1474 151 GENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGD 230 (366)
T ss_pred CCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 76753799999735488999875667650687635528989899999999999854046874803999999988761864
Q ss_pred HHHHHHHHCC
Q ss_conf 7899988145
Q gi|254780217|r 221 VARAIKILHY 230 (347)
Q Consensus 221 ~~~A~~ll~~ 230 (347)
.|.|+.++..
T Consensus 231 AR~aidilr~ 240 (366)
T COG1474 231 ARKAIDILRR 240 (366)
T ss_pred HHHHHHHHHH
T ss_conf 7760899999
No 93
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.63 E-value=5.9e-07 Score=75.66 Aligned_cols=153 Identities=20% Similarity=0.264 Sum_probs=96.2
Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCC
Q ss_conf 56109299999999999828898166311798988899999999998177998864312101267886799996789875
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD 91 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd 91 (347)
..++|+++.......++..|+ | .|+.||||+||+++|..+|+.+-- ...--.|.+ |
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~--~-vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~----------------~ 79 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG--H-VLLEGPPGVGKTLLARALARALGL-----PFVRIQCTP----------------D 79 (329)
T ss_pred CCCCCCHHHHHHHHHHHHCCC--C-EEEECCCCCCHHHHHHHHHHHHCC-----CCEEEECCC----------------C
T ss_conf 655266999999999998599--7-787798987779999999998389-----818995689----------------9
Q ss_pred EEEECCCCHHHCCCCCCCCCHHHHHHH---HHHCCC--CCCCCC-CHHHHHHHHHHCCHHHHHHHHHHHHH---------
Q ss_conf 453001000101342123237887554---431022--211112-10353220554240001456777663---------
Q gi|254780217|r 92 FLYLSYSLNPKTGKWRTVITVDEIRRI---RYFLSL--TANTGY-WRVIMIDPVDGMNRNAANALLKSLEE--------- 156 (347)
Q Consensus 92 ~~~i~~~~~~k~~~~~~~I~vd~IR~l---~~~~~~--~~~~~~-~Ki~IId~ad~ln~~AaNALLK~LEE--------- 156 (347)
+.- ...++...+... ...+.. .|.... ..|+.+|++++-+...+|+||-.|+|
T Consensus 80 l~p------------~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vt~~~~~ 147 (329)
T COG0714 80 LLP------------SDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLT 147 (329)
T ss_pred CCH------------HHHCCHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCEEEECCCC
T ss_conf 888------------88205688876642577189846873345133899870345898899999999972689707966
Q ss_pred -CCCCCCEEEE-ECC------CCCCCHHHHCEE-EEEECCCCCHHHHHHHHHH
Q ss_conf -0343416765-044------335730252036-9886479998999999997
Q gi|254780217|r 157 -PPQKVLFILI-SHA------SPTILSTIRSRC-LSIKFNSLSENNLYKALEQ 200 (347)
Q Consensus 157 -Pp~~t~fiLi-t~~------~~~il~TI~SRc-~~i~f~~l~~~~~~~~L~~ 200 (347)
.+-..-|+.+ |.| .+.+++..+-|| ..+.+..+..++....+..
T Consensus 148 ~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 148 TIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 53379987899826867657887899888810388776489973889999987
No 94
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=98.61 E-value=3.3e-06 Score=69.62 Aligned_cols=133 Identities=21% Similarity=0.252 Sum_probs=86.1
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHH---HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 55558756561092999999999---998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 4 RAFDPVYNQRLFGHEDIEKFLSQ---YYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 4 ~~~~p~~~~~i~G~~~~~~~L~~---~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
..+.|-.+++++|-+.+++.|.+ .+..|..+|..|+||.+|+||+++.+++....-.
T Consensus 20 ~~~d~v~l~~L~Gie~Qk~~l~~NT~~F~~G~pAnnvLLwG~RGtGKSSlVKall~~~~~-------------------- 79 (248)
T pfam05673 20 PHPDPVDLDDLVGIDRQKEALLRNTEQFLAGLPANNVLLWGARGTGKSSLVKALLNEYAD-------------------- 79 (248)
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH--------------------
T ss_conf 788989988934939999999999999980898613676768989888999999998631--------------------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH---HHHHHHH----
Q ss_conf 999967898754530010001013421232378875544310222111121035322055424000---1456777----
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA---ANALLKS---- 153 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A---aNALLK~---- 153 (347)
..-.+++|.+. .+.++-.|...+... ++|++|. +|+++-++ .=..||+
T Consensus 80 -------~gLrlIEv~k~------------~L~~Lp~i~~~l~~~----~~kFIiF--~DDLSFe~~d~~yk~LKs~LeG 134 (248)
T pfam05673 80 -------QGLRLIEVDKD------------DLGDLPDIVDLLRGR----PYRFILF--CDDLSFEEGESSYKALKSVLEG 134 (248)
T ss_pred -------CCCEEEEECHH------------HHCCHHHHHHHHHCC----CCCEEEE--ECCCCCCCCCHHHHHHHHHHCC
T ss_conf -------49569998788------------872199999999649----9757999--6355767897369999999657
Q ss_pred -HHHCCCCCCEEEEECCCCCCCHHHHCEE
Q ss_conf -6630343416765044335730252036
Q gi|254780217|r 154 -LEEPPQKVLFILISHASPTILSTIRSRC 181 (347)
Q Consensus 154 -LEEPp~~t~fiLit~~~~~il~TI~SRc 181 (347)
+|.+|+|++|--+||..+-|+.+-.-|-
T Consensus 135 ~l~~~p~NvliYaTSNRRHLi~e~~~d~~ 163 (248)
T pfam05673 135 GLEARPDNVLIYATSNRRHLIPEYMSDNE 163 (248)
T ss_pred CCCCCCCEEEEEEECCCHHCCCHHHCCCC
T ss_conf 64468873899984270003633323477
No 95
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.58 E-value=1.5e-06 Score=72.45 Aligned_cols=114 Identities=24% Similarity=0.324 Sum_probs=69.7
Q ss_pred HHHCCHHHHHHHHHHHHHC--CC-------------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 5610929999999999982--88-------------98166311798988899999999998177998864312101267
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCS--GR-------------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~--~~-------------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
.-|+||+++++.|.-+.-+ .| -...+|+.||-|+|||.+|+.+|+.+-- |.-.+..
T Consensus 72 ~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~v-------PF~iaDA-- 142 (411)
T PRK05342 72 QYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNV-------PFAIADA-- 142 (411)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC-------CEEEEEE--
T ss_conf 1402848888999999999999986021335665213453899899997788999999998699-------9899861--
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----------
Q ss_conf 88679999678987545300100010134212323788-755443102221111210353220554240-----------
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE-IRRIRYFLSLTANTGYWRVIMIDPVDGMNR----------- 144 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~-IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----------- 144 (347)
...-+ +|..+. -||. |+.|......-.....+=|+.||++|.+..
T Consensus 143 ----T~lTE-----------------aGYVGe--DVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDV 199 (411)
T PRK05342 143 ----TTLTE-----------------AGYVGE--DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDV 199 (411)
T ss_pred ----CEECC-----------------CCCCCC--CHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCC
T ss_conf ----20012-----------------674560--7999999999982888998836828885023454247888887776
Q ss_pred ---HHHHHHHHHHHHC
Q ss_conf ---0014567776630
Q gi|254780217|r 145 ---NAANALLKSLEEP 157 (347)
Q Consensus 145 ---~AaNALLK~LEEP 157 (347)
.-|.||||++|.-
T Consensus 200 SgEGVQqaLLkiiEGt 215 (411)
T PRK05342 200 SGEGVQQALLKILEGT 215 (411)
T ss_pred CCHHHHHHHHHHHCCC
T ss_conf 5124899999987587
No 96
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.9e-06 Score=70.03 Aligned_cols=175 Identities=18% Similarity=0.116 Sum_probs=107.9
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHC------------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC
Q ss_conf 87565610929999999999982------------889816631179898889999999999817799886431210126
Q gi|254780217|r 8 PVYNQRLFGHEDIEKFLSQYYCS------------GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 (347)
Q Consensus 8 p~~~~~i~G~~~~~~~L~~~~~~------------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~ 75 (347)
.-.+.++.|.+.+.+.+..++.. -+-|..+||+||||+||+.+|.++|...-..
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~-------------- 303 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSR-------------- 303 (494)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC--------------
T ss_conf 851453236377999999999999970887632589888369998899975899999987544982--------------
Q ss_pred CCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-----------H
Q ss_conf 78867999967898754530010001013421232378875544310222111121035322055424-----------0
Q gi|254780217|r 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-----------R 144 (347)
Q Consensus 76 ~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-----------~ 144 (347)
+.+-..|++.-- |-.. +-.-||++-.... ...--|++||++|.+- .
T Consensus 304 --------fi~v~~~~l~sk---~vGe--------sek~ir~~F~~A~----~~~p~iifiDEiDs~~~~r~~~~~~~~~ 360 (494)
T COG0464 304 --------FISVKGSELLSK---WVGE--------SEKNIRELFEKAR----KLAPSIIFIDEIDSLASGRGPSEDGSGR 360 (494)
T ss_pred --------EEEECCHHHHHH---HHHH--------HHHHHHHHHHHHH----HCCCCEEEHHHHHHHHCCCCCCCCCHHH
T ss_conf --------488433555407---7659--------9999999999999----6699889748866674128998763799
Q ss_pred HHHHHHHHHHH--HCCCCCCEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHHHHCCC--C---CHHHHHHHH
Q ss_conf 00145677766--303434167650443357302520--36-98864799989999999972788--8---967899999
Q gi|254780217|r 145 NAANALLKSLE--EPPQKVLFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALEQLKIM--G---WDSKRDFVK 214 (347)
Q Consensus 145 ~AaNALLK~LE--EPp~~t~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~~~~~~--~---~~~~~~~~~ 214 (347)
...|-||..+. |+-++++.|-.||.+..+.|-++- |- ..+.|.+++.++-.++++..... . .+.....++
T Consensus 361 rv~~~ll~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~ 440 (494)
T COG0464 361 RVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELA 440 (494)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999999974754437648996479833268756243663037871798989999999998541565115564199999
Q ss_pred HHCCC
Q ss_conf 97598
Q gi|254780217|r 215 IAAYG 219 (347)
Q Consensus 215 ~~s~G 219 (347)
..++|
T Consensus 441 ~~t~~ 445 (494)
T COG0464 441 EITEG 445 (494)
T ss_pred HHHCC
T ss_conf 87527
No 97
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.55 E-value=4.3e-06 Score=68.68 Aligned_cols=216 Identities=19% Similarity=0.244 Sum_probs=131.9
Q ss_pred HHHCCHHHHHHH---HHHHHHCCCC-CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC---------------------
Q ss_conf 561092999999---9999982889-816631179898889999999999817799886---------------------
Q gi|254780217|r 12 QRLFGHEDIEKF---LSQYYCSGRM-HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK--------------------- 66 (347)
Q Consensus 12 ~~i~G~~~~~~~---L~~~~~~~~l-~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~--------------------- 66 (347)
+-++||..+.+. ....+++||+ .+++|+.||||+||+.+|..+|+.|=...+...
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~ 118 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQAL 118 (450)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCHHHHHHHHH
T ss_conf 86112498887625999999717666617999789997688999999998589998215013322331000889999999
Q ss_pred ----------------------------CCHHHCC------------CCC-----CC-HHH-HHHHCC-CCCCEEEECCC
Q ss_conf ----------------------------4312101------------267-----88-679-999678-98754530010
Q gi|254780217|r 67 ----------------------------APVRMCN------------PDP-----CS-PFV-KQMASH-ALHDFLYLSYS 98 (347)
Q Consensus 67 ----------------------------~~~~~~~------------~~~-----~~-~~~-~~i~~~-~hpd~~~i~~~ 98 (347)
.|.+... .|. .. ... .....+ ..-|++.|+..
T Consensus 119 RraIGvrikE~reV~EGeV~~l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~k~~~lg~~i~~ql~~~~V~~GDVI~Id~e 198 (450)
T COG1224 119 RRAIGVRIKETREVYEGEVVELEIRRARNPLNPYGKVPSGAIITLKTKDEEKTLRLGPEIAEQLVKEGVEEGDVIYIDAE 198 (450)
T ss_pred HHHHCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 98645486466688877899998762357998766554532899996366457625989999999837445878999825
Q ss_pred CHH--------------------------HCCCC-------------------------------CCCCCHHHHHHH-HH
Q ss_conf 001--------------------------01342-------------------------------123237887554-43
Q gi|254780217|r 99 LNP--------------------------KTGKW-------------------------------RTVITVDEIRRI-RY 120 (347)
Q Consensus 99 ~~~--------------------------k~~~~-------------------------------~~~I~vd~IR~l-~~ 120 (347)
... ++.-. -..| -|++|+- .+
T Consensus 199 tG~V~klGrs~~~~~~~~dl~~~~~V~~P~Gev~K~KEi~~~vTLHDlDv~nar~~G~~sl~~~~~~eI-~~evR~~vn~ 277 (450)
T COG1224 199 TGRVKKLGRSKARAREDFDLEDTRFVPLPEGEVQKRKEIVQTVTLHDLDVANARAQGILSLFSGGTGEI-TDEVREEVNE 277 (450)
T ss_pred CCEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEEEEHHHHHHHCCCCCHHHHHCCCCCCC-CHHHHHHHHH
T ss_conf 667999422423354223344217987798852566778999870031343204111375652776657-8899999999
Q ss_pred HCCCCCCCCC----CHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEC------------CCCCCCHHHHCEEEEE
Q ss_conf 1022211112----10353220554240001456777663034341676504------------4335730252036988
Q gi|254780217|r 121 FLSLTANTGY----WRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH------------ASPTILSTIRSRCLSI 184 (347)
Q Consensus 121 ~~~~~~~~~~----~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~------------~~~~il~TI~SRc~~i 184 (347)
.+..--.+|+ --|.+||++|.|..++..-|=|-||++=. -++||.|| .|+.|+.-++-|...+
T Consensus 278 ~V~~~ieeGkAElVpGVLFIDEvHmLDIE~FsFlnrAlEse~a-PIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII 356 (450)
T COG1224 278 KVKKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELA-PIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLII 356 (450)
T ss_pred HHHHHHHCCCEEEECCEEEEECHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCEEEECCCCCCCCCCCCHHHHHHEEEE
T ss_conf 9999985495786134289732134557899999987631467-579997177500121667768888987666225677
Q ss_pred ECCCCCHHHHHHHHH----HHCCCCCHHHHHHHHHHCCC-CHHHHHHHHC
Q ss_conf 647999899999999----72788896789999997598-9789998814
Q gi|254780217|r 185 KFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYG-SVARAIKILH 229 (347)
Q Consensus 185 ~f~~l~~~~~~~~L~----~~~~~~~~~~~~~~~~~s~G-s~~~A~~ll~ 229 (347)
.-.|-+.+++++++. .+....++++++.+..++.- |.|-|++++.
T Consensus 357 ~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~ 406 (450)
T COG1224 357 STRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLT 406 (450)
T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHCC
T ss_conf 44779889999999976435403048889999975150344899998616
No 98
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.52 E-value=6.2e-07 Score=75.48 Aligned_cols=178 Identities=16% Similarity=0.211 Sum_probs=95.2
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHC
Q ss_conf 58756561092999999999998288981663117989888999999999981779988643121012678867999967
Q gi|254780217|r 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS 86 (347)
Q Consensus 7 ~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (347)
||--|++|+||++++..|.-+.-...++| +|+.||||+||+++|++++.-|---......+|..-.+ ..++.+.....
T Consensus 3 ~~~Pfs~IvGQe~~K~AL~laav~p~~gg-vLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~~~~-~~~~~~~~~~~ 80 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGG-VLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP-EDCPEWAEVSS 80 (334)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCC-CCCHHHHHCCC
T ss_conf 99992376493999999999772789860-89978998659999999997289951103675566774-21133431145
Q ss_pred CC--CCCEEEECCCCHHHCCCCCCCCCHHHHHHHHH-HCCCCC---CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 89--87545300100010134212323788755443-102221---1112103532205542400014567776630343
Q gi|254780217|r 87 HA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY-FLSLTA---NTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 87 ~~--hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~-~~~~~~---~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
.. ....-+++.+..-.....-..|.++. .+.. .-...| .....-|..+|++-.+...-.++||-.+|+= .+
T Consensus 81 ~~~~~~~~p~v~lPl~atedr~~G~ldie~--al~~G~~~~~PGlLa~Ah~GVLylDEinll~~~vld~Ll~~~e~G-~~ 157 (334)
T PRK13407 81 TTMVERPTPVIDLPLGATEDRVVGALDIER--ALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSG-EN 157 (334)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHH--HHHCCCCCCCCCHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCC-CE
T ss_conf 553448998767899999866447421888--862698778860543402886787205333388999999887169-57
Q ss_pred ------------CCEEEE-ECCCC--CCCHHHHCEE-EEEECCCC
Q ss_conf ------------416765-04433--5730252036-98864799
Q gi|254780217|r 161 ------------VLFILI-SHASP--TILSTIRSRC-LSIKFNSL 189 (347)
Q Consensus 161 ------------t~fiLi-t~~~~--~il~TI~SRc-~~i~f~~l 189 (347)
+.|+|+ |-||+ .+-|-+.-|- ..+.+..+
T Consensus 158 ~IeReg~s~~~ParF~LVatmNPeEg~Lrp~lLDRf~l~v~v~~~ 202 (334)
T PRK13407 158 VVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSP 202 (334)
T ss_pred EEEECCEEEECCCCCEEEEEECCCCCCCCHHHHHHHCEEEEECCC
T ss_conf 999776346036626589820888777598998361006871487
No 99
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=98.52 E-value=2.1e-06 Score=71.16 Aligned_cols=70 Identities=16% Similarity=0.407 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHCCH------------HHHHHHHHHHHHCCCC--------CCEEEEE------CCCCCCCHHHHCEE-EE
Q ss_conf 10353220554240------------0014567776630343--------4167650------44335730252036-98
Q gi|254780217|r 131 WRVIMIDPVDGMNR------------NAANALLKSLEEPPQK--------VLFILIS------HASPTILSTIRSRC-LS 183 (347)
Q Consensus 131 ~Ki~IId~ad~ln~------------~AaNALLK~LEEPp~~--------t~fiLit------~~~~~il~TI~SRc-~~ 183 (347)
.=||+||++|.... .-|-+|||++|--.-+ ..+++|| ..|+.++|-..-|. .+
T Consensus 249 ~GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~tK~G~V~TdhILFIasGAFh~sKPSDLIPEl~GRlPv~ 328 (442)
T PRK05201 249 NGIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVAKPSDLIPELQGRFPIR 328 (442)
T ss_pred CCCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCEEE
T ss_conf 17045114656530357889897733078887887538855567776025503455045001478202249871755058
Q ss_pred EECCCCCHHHHHHHHHH
Q ss_conf 86479998999999997
Q gi|254780217|r 184 IKFNSLSENNLYKALEQ 200 (347)
Q Consensus 184 i~f~~l~~~~~~~~L~~ 200 (347)
+.+.+|+.+++.++|.+
T Consensus 329 v~L~~L~~~dl~~ILte 345 (442)
T PRK05201 329 VELDALTEEDFVRILTE 345 (442)
T ss_pred EECCCCCHHHHHHHHCC
T ss_conf 88244999999999678
No 100
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.51 E-value=4.2e-07 Score=76.86 Aligned_cols=158 Identities=18% Similarity=0.278 Sum_probs=96.0
Q ss_pred HHHCCHHHHHHHHHHHHHCCC-----CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHC
Q ss_conf 561092999999999998288-----981663117989888999999999981779988643121012678867999967
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR-----MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS 86 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~-----l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (347)
.+-+|-+.+++.+...+.-.+ -..=+.|+||||+|||++|..+|+++--... .-.+|.......=+-.|+-.-
T Consensus 322 ~dHyGL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~--rislGGv~DeaeirGHrrTYv 399 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV--RMALGGVRDEAEIRGHRRTYI 399 (784)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE--EEECCCCCCHHHHCCCCCCCC
T ss_conf 543065779999999999998624677877996469987724699999998589869--980688788888256433434
Q ss_pred CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH----HHHHHHHHHHHHCC----
Q ss_conf 8987545300100010134212323788755443102221111210353220554240----00145677766303----
Q gi|254780217|r 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR----NAANALLKSLEEPP---- 158 (347)
Q Consensus 87 ~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----~AaNALLK~LEEPp---- 158 (347)
|+.|.-+ |..+ ...... .-|+++|++|.|+. +-+.|||-.|- |-
T Consensus 400 gampGri------------------i~~l-------~~a~~~--nPv~llDEiDK~~~~~~Gdp~salLEvLD-peQN~~ 451 (784)
T PRK10787 400 GSMPGKL------------------IQKM-------AKVGVK--NPLFLLDEIDKMSSDMRGDPASALLEVLD-PEQNVA 451 (784)
T ss_pred CCCCHHH------------------HHHH-------HHHCCC--CCEEEEHHHHHHCCCCCCCHHHHHHHHCC-HHHCCC
T ss_conf 4368389------------------9999-------974898--85665003555224558998899998459-765564
Q ss_pred ------------CCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHH
Q ss_conf ------------434167650443357302520369886479998999999997
Q gi|254780217|r 159 ------------QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 (347)
Q Consensus 159 ------------~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~ 200 (347)
++++||.++|..+ |+++++-|.-.+.++.-+.++-.++-++
T Consensus 452 F~Dhyl~~~~DlS~v~Fi~TaN~~~-ip~pLlDRmE~i~~~gYt~~eK~~Ia~~ 504 (784)
T PRK10787 452 FSDHYLEVDYDLSDVMFVATSNSMN-IPAPLLDRMEVIRLSGYTEDEKLNIAKR 504 (784)
T ss_pred CCCCEEECCCCHHHEEEEEECCCCC-CCHHHHHHEEEEEECCCCHHHHHHHHHH
T ss_conf 0003220464522258997327677-8767763121554116767889999997
No 101
>PRK08903 hypothetical protein; Validated
Probab=98.50 E-value=5.5e-06 Score=67.82 Aligned_cols=172 Identities=15% Similarity=0.170 Sum_probs=112.0
Q ss_pred CHHHHCCHHH--HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCC
Q ss_conf 5656109299--99999999982889816631179898889999999999817799886431210126788679999678
Q gi|254780217|r 10 YNQRLFGHED--IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 (347)
Q Consensus 10 ~~~~i~G~~~--~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (347)
+|+.++.-.+ +...+........-...+.+|||+|+|||-+..+++......
T Consensus 16 tfdnFv~g~n~~~~~~l~~~~~~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~-------------------------- 69 (227)
T PRK08903 16 TFDNFIAGENAELVTRLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAAASEG-------------------------- 69 (227)
T ss_pred CHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC--------------------------
T ss_conf 643155777599999999887438878669998999998889999999999806--------------------------
Q ss_pred CCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--CCEEE
Q ss_conf 9875453001000101342123237887554431022211112103532205542400014567776630343--41676
Q gi|254780217|r 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK--VLFIL 165 (347)
Q Consensus 88 ~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~--t~fiL 165 (347)
.++..++..... .+. ..+ .....+++||++|.+....+.+|..++.+--.+ +.++.
T Consensus 70 -~~~~~yl~~~~~------------~~~---~~~------~~~~d~l~iDDi~~i~~~~q~~lF~l~N~~~~~~~~~ll~ 127 (227)
T PRK08903 70 -GKNARYLDPASP------------LLA---FDF------DPRAELYAVDDVERLDDAQQIALFNLFNRVRAHGKTALLV 127 (227)
T ss_pred -CCCEEEECCCCC------------HHH---HHH------HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf -997499651104------------577---742------0018989996411489569999999999999729948997
Q ss_pred EECCCC---CCCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 504433---5730252036---9886479998999999997----27888967899999975989789998814
Q gi|254780217|r 166 ISHASP---TILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 166 it~~~~---~il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
.++.+. .+.|-++||. ..+.+.+|+.+....+|.+ .+...+++..++++.-..++++.....++
T Consensus 128 s~~~~p~~l~~~~DL~SRl~~gl~~~i~~pdde~~~~iL~~~a~~rgl~l~~~v~~yl~~r~~R~~~~L~~~l~ 201 (227)
T PRK08903 128 AGPAAPLALDVREDLRTRLGWGLVYEVKPLSDEDKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLD 201 (227)
T ss_pred CCCCCHHHCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 18997120120089999993897389979799999999999999629999889999999983478999999999
No 102
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.50 E-value=0.00015 Score=56.36 Aligned_cols=134 Identities=12% Similarity=0.258 Sum_probs=91.7
Q ss_pred HHHCCHHHHHHHHHHHHHCCC--------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CCCCHHHCCCCCCCHHHH
Q ss_conf 561092999999999998288--------98166311798988899999999998177998-864312101267886799
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR--------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDF-SKAPVRMCNPDPCSPFVK 82 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~--------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~-~~~~~~~~~~~~~~~~~~ 82 (347)
..|+||++++..+.+++...| .--++||.||.|+|||-+|.++|..++..... -...+.++.. .|.+.+
T Consensus 566 ~~ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E--~hsvsr 643 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE--AHTVSR 643 (852)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCC--HHHHHH
T ss_conf 997284999999999999987179999998568998789987789999999999719861147842243210--436878
Q ss_pred HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC----
Q ss_conf 9967898754530010001013421232378875544310222111121035322055424000145677766303----
Q gi|254780217|r 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP---- 158 (347)
Q Consensus 83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp---- 158 (347)
. -|+-|.|.=++ + +| .-.+.| ..+| |-|+++|++|.-+.+-.|-||-+|+|--
T Consensus 644 L--iGaPPGYVGy~----e-GG-----~LTe~V-------rr~P----ysVvLfDEIEKAHpdV~nilLQvlD~G~LtD~ 700 (852)
T TIGR03345 644 L--KGSPPGYVGYG----E-GG-----VLTEAV-------RRKP----YSVVLLDEVEKAHPDVLELFYQVFDKGVMEDG 700 (852)
T ss_pred H--CCCCCCCCCCC----C-CC-----HHHHHH-------HHCC----CEEEEECHHHHCCHHHHHHHHHHHCCCEEECC
T ss_conf 6--38999766748----7-77-----210988-------8099----86888611300288999999987246777579
Q ss_pred -------CCCCEEEEECCC
Q ss_conf -------434167650443
Q gi|254780217|r 159 -------QKVLFILISHAS 170 (347)
Q Consensus 159 -------~~t~fiLit~~~ 170 (347)
.||++|++||=-
T Consensus 701 ~Gr~vdF~NtIIImTSN~G 719 (852)
T TIGR03345 701 EGREIDFKNTVILLTSNAG 719 (852)
T ss_pred CCCEEECEEEEEEECCCHH
T ss_conf 9998845212999757244
No 103
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.50 E-value=2.6e-07 Score=78.58 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=58.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCC-CCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 16631179898889999999999817799-88643121012678867999967898754530010001013421232378
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPD-FSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~-~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
-++||.||+|+||+.+|.++|+.+..... .....|..... +...-..-|+.|.+.- .+
T Consensus 4 ~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~----~~~v~~l~g~~~gyvg-----------------~~ 62 (168)
T pfam07724 4 GSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYME----EHSVSRLIGAPPGYVG-----------------YE 62 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC----HHHHHHHCCCCCCCCC-----------------CC
T ss_conf 79998898998999999999999679853448855756542----5699987058998726-----------------24
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 8755443102221111210353220554240001456777663
Q gi|254780217|r 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
+--.+.+.+... ++.|+++|++|+.+.+.+|+||++|||
T Consensus 63 ~~G~l~~~v~~~----p~~VillDEIeKa~~~V~~~LL~ild~ 101 (168)
T pfam07724 63 EGGQLTEAVRRK----PYSIVLIDEIEKAHPGVQNDLLQILEG 101 (168)
T ss_pred CCCCHHHHHHHC----CCCEEEEHHHHHHCHHHHHHHHHHCCC
T ss_conf 265078999838----984898657766589999999987058
No 104
>PRK06893 DNA replication initiation factor; Validated
Probab=98.50 E-value=4.4e-06 Score=68.63 Aligned_cols=177 Identities=15% Similarity=0.167 Sum_probs=112.1
Q ss_pred CCCHHHHCCHHH--HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 875656109299--999999999828898166311798988899999999998177998864312101267886799996
Q gi|254780217|r 8 PVYNQRLFGHED--IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA 85 (347)
Q Consensus 8 p~~~~~i~G~~~--~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (347)
..+|+.+++-++ +...|...+..-.-|. +.+|||+|+||+-+..+++.......
T Consensus 12 ~~tfdnF~~~~n~~~~~~l~~~~~~~~~~~-l~i~G~~gsGKTHLLqa~~~~~~~~~----------------------- 67 (229)
T PRK06893 12 DETLDNFYSDNNLLLLDSLRKNFIDLKQPF-FYIWGGKSSGKSHLLKAVSNHYLLNQ----------------------- 67 (229)
T ss_pred CCCHHCCCCCCHHHHHHHHHHHCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHHHC-----------------------
T ss_conf 665431546874999999997550246987-99989999988999999999999718-----------------------
Q ss_pred CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--HHHHHHHHHHHHHCCC-CCC
Q ss_conf 7898754530010001013421232378875544310222111121035322055424--0001456777663034-341
Q gi|254780217|r 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN--RNAANALLKSLEEPPQ-KVL 162 (347)
Q Consensus 86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln--~~AaNALLK~LEEPp~-~t~ 162 (347)
+ ...+++.. +... ... ++ .+. ....-+++||++|.+. .+.+.+|.-++-+--+ +..
T Consensus 68 ---~-~~~yi~~~---~~~~----~~~-~~---l~~------l~~~d~l~iDDi~~i~g~~~~e~~lF~l~N~l~~~~~~ 126 (229)
T PRK06893 68 ---R-TAIYIPLS---KSQY----FSP-AV---LEN------LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKESGKT 126 (229)
T ss_pred ---C-CEEEEEHH---HHHH----CCH-HH---HHH------HHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf ---9-85999737---7564----069-99---987------65479799967234248838999999999999975991
Q ss_pred EEEEE-CC-CCC---CCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 67650-44-335---730252036---9886479998999999997----27888967899999975989789998814
Q gi|254780217|r 163 FILIS-HA-SPT---ILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 163 fiLit-~~-~~~---il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
++++| +. |.. .+|-++||. ..+.+.+|+.++..++|.. .+...+++..+++..-...+++....+++
T Consensus 127 ~ll~ss~~~p~~l~~~l~DL~SRl~~~~~~~i~~~dd~~~~~iL~~~a~~rgl~l~~~v~~yl~~r~~R~~~~l~~~l~ 205 (229)
T PRK06893 127 LLLISANQSPHALQIKLPDLASRLTWGEIYQLNDLTDEQKIEVLQRNAYQRGIELSDETANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred EEEEECCCCHHHHCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 7998579883322100267999996883699667775799999999999649999989999999983478999999999
No 105
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=98.48 E-value=7.5e-06 Score=66.75 Aligned_cols=201 Identities=15% Similarity=0.118 Sum_probs=112.9
Q ss_pred HCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEE
Q ss_conf 10929999999999982889816631179898889999999999817799886431210126788679999678987545
Q gi|254780217|r 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 (347)
Q Consensus 14 i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~ 93 (347)
++|-++..+.|.+.+.++.-+ -+++|||+|+|||++++.+++.+-.... ....-.|.. ......+..-....
T Consensus 1 F~~Re~EL~~L~~~~~~~~~~-~ivi~G~RR~GKTsLi~~~~~~~~~~~~--~~i~~~~~~---~~~~~~~~~~~~~~-- 72 (223)
T pfam01637 1 FFDREKELKELEEWAERGTYP-IIVVYGPRRCGKTALLREFLEELRELGY--RVIYYDPLR---REFEEKLDRFEEAK-- 72 (223)
T ss_pred CCCHHHHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCC--EEEEEECHH---HHHHHHHHHHHHHH--
T ss_conf 989799999999999669971-8999868878799999999986334685--289995144---43799999888889--
Q ss_pred EECCCCHHHCCC---CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-HH----HHHHHHHHHHCC--CCCCE
Q ss_conf 300100010134---212323788755443102221111210353220554240-00----145677766303--43416
Q gi|254780217|r 94 YLSYSLNPKTGK---WRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-NA----ANALLKSLEEPP--QKVLF 163 (347)
Q Consensus 94 ~i~~~~~~k~~~---~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-~A----aNALLK~LEEPp--~~t~f 163 (347)
.+........+. ...........++...+.. .++.-|++||++..+-. ++ -..|.++++..+ .++.+
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~---~~~~~iiviDEfq~l~~~~~~~~~~~~l~~~~d~~~~~~~~~~ 149 (223)
T pfam01637 73 RLAEALGDALPKIGIAKSKLAFLSLTLLFELLKR---KGKKIAIIIDEVQYAIGLNGAESYVKLLLNLIDYPPKEYHLIV 149 (223)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999987651233222112078899999999985---5996599970167764024430599999999997524577589
Q ss_pred EEEECCCCCCCHH------HHCEEEEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 7650443357302------520369886479998999999997----2788896789999997598978999
Q gi|254780217|r 164 ILISHASPTILST------IRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAI 225 (347)
Q Consensus 164 iLit~~~~~il~T------I~SRc~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~ 225 (347)
|++.+..+-+..- .--|-..+.+.|++.++..+++.. .+...++++...++....|.|+-..
T Consensus 150 I~~GS~~~~m~~~~~~~~plygR~~~i~l~p~~~~~~~efl~~~f~e~~~~~~~~~~~~iy~~~gG~P~yL~ 221 (223)
T pfam01637 150 VLCGSSEGLTIELLDYKSPLYGRHRWALLKPFDFETAWNFLREGFEELYEPGPKEEFEEVWRLLGGNPGYLE 221 (223)
T ss_pred EEECCHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHH
T ss_conf 997271999999862056535750227726899899999999999984789998999999999698389984
No 106
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=98.48 E-value=4e-07 Score=76.99 Aligned_cols=199 Identities=18% Similarity=0.184 Sum_probs=133.4
Q ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 55587565610929999999999982889816631179898889999999999817799886431210126788679999
Q gi|254780217|r 5 AFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM 84 (347)
Q Consensus 5 ~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i 84 (347)
|+|==..|.+||-++.++.....++..+=-+ =||.|.||||||..|.-+|+.|.... ..|-..=..
T Consensus 201 ~A~~GkiDPLIGRE~EleRtiQvLCRR~KNN-Pl~VGEPGVGKTAI~EGLA~~I~~~~---kvPe~Lkn~---------- 266 (774)
T TIGR02639 201 KAKNGKIDPLIGREDELERTIQVLCRRKKNN-PLLVGEPGVGKTAIVEGLAQRIAEGQ---KVPEVLKNA---------- 266 (774)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC-CCEECCCCCCHHHHHHHHHHHHHCCC---CCCHHHCCC----------
T ss_conf 9860887873456688742333203456788-72044888644899999999864156---467002478----------
Q ss_pred HCCCCCCEEEECCCCHHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCCH-HHHHHHHHHC---------CHHHHHHHHHH
Q ss_conf 67898754530010001013421232378-8755443102221111210-3532205542---------40001456777
Q gi|254780217|r 85 ASHALHDFLYLSYSLNPKTGKWRTVITVD-EIRRIRYFLSLTANTGYWR-VIMIDPVDGM---------NRNAANALLKS 153 (347)
Q Consensus 85 ~~~~hpd~~~i~~~~~~k~~~~~~~I~vd-~IR~l~~~~~~~~~~~~~K-i~IId~ad~l---------n~~AaNALLK~ 153 (347)
.++-++...--.+-|.|.. =| =+.++++.+... +.. |+.|||+|.. +.+|+|-|=-.
T Consensus 267 ------~IY~LDmG~LLAGTKYRGD--FE~RLK~V~~Ei~~~----~~anILFIDEIHTIVGAGATSGGsmDASNLLKPa 334 (774)
T TIGR02639 267 ------KIYSLDMGTLLAGTKYRGD--FEERLKAVVSEIEKE----PNANILFIDEIHTIVGAGATSGGSMDASNLLKPA 334 (774)
T ss_pred ------CEEEECHHHHHHHCCCCCH--HHHHHHHHHHHHHCC----CCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHH
T ss_conf ------3454043456410245424--789999999998528----9995466411010331787875155244321125
Q ss_pred HHHCCCCCCEEEEECCCC--CCC---HHHHCEEEEEECCCCCHHHHHHHHHHH--------CCCCCHHHHHHHHHHCCCC
Q ss_conf 663034341676504433--573---025203698864799989999999972--------7888967899999975989
Q gi|254780217|r 154 LEEPPQKVLFILISHASP--TIL---STIRSRCLSIKFNSLSENNLYKALEQL--------KIMGWDSKRDFVKIAAYGS 220 (347)
Q Consensus 154 LEEPp~~t~fiLit~~~~--~il---~TI~SRc~~i~f~~l~~~~~~~~L~~~--------~~~~~~~~~~~~~~~s~Gs 220 (347)
|.. ..-.||=.|++-+ +.- -.+-=|-|+|.+.=||.+|..++|+.. ...+.++.++.++.+|.--
T Consensus 335 L~~--G~iRCIGsTTy~EY~~~FeKDrALsRRFQKIDv~EPs~eet~~ILkGLk~~YE~fH~V~Y~~eal~~Av~LS~ry 412 (774)
T TIGR02639 335 LAS--GKIRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSARY 412 (774)
T ss_pred HHC--CCEEEECCCCHHHHHCHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHH
T ss_conf 307--877862265248641110102021654233117957888999999865542013250113869999999998886
Q ss_pred ------HHHHHHHHCCC
Q ss_conf ------78999881457
Q gi|254780217|r 221 ------VARAIKILHYD 231 (347)
Q Consensus 221 ------~~~A~~ll~~~ 231 (347)
|-+||.++|.-
T Consensus 413 I~DRfLPDKAIDviDEa 429 (774)
T TIGR02639 413 INDRFLPDKAIDVIDEA 429 (774)
T ss_pred CCCCCCCCHHHHHHHHH
T ss_conf 02578985432288999
No 107
>KOG0734 consensus
Probab=98.46 E-value=7.9e-07 Score=74.64 Aligned_cols=183 Identities=16% Similarity=0.216 Sum_probs=107.4
Q ss_pred CCCHHHHCCHHHHHHHHHHHHH-----------CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 8756561092999999999998-----------28898166311798988899999999998177998864312101267
Q gi|254780217|r 8 PVYNQRLFGHEDIEKFLSQYYC-----------SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 8 p~~~~~i~G~~~~~~~L~~~~~-----------~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
-..|++|-|-+++++.|..... .|+||-+.|++||||+||+.+|++.|.. .+.|.-.|
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE-------A~VPFF~~---- 368 (752)
T KOG0734 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE-------AGVPFFYA---- 368 (752)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCC-------CCCCEEEC----
T ss_conf 6550021472789999999999860908764314758885387689997556999986055-------68974741----
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC-----------CHH
Q ss_conf 886799996789875453001000101342123237887554431022211112103532205542-----------400
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM-----------NRN 145 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~l-----------n~~ 145 (347)
+|+.-|=+++. .+-.-||+|-...... .-.|++||++|.. ..+
T Consensus 369 ---------sGSEFdEm~VG-------------vGArRVRdLF~aAk~~----APcIIFIDEiDavG~kR~~~~~~y~kq 422 (752)
T KOG0734 369 ---------SGSEFDEMFVG-------------VGARRVRDLFAAAKAR----APCIIFIDEIDAVGGKRNPSDQHYAKQ 422 (752)
T ss_pred ---------CCCCHHHHHHC-------------CCHHHHHHHHHHHHHC----CCEEEEEECHHHHCCCCCCCHHHHHHH
T ss_conf ---------66204454220-------------1489999999998734----985999720022056678627789998
Q ss_pred HHHHHHHHHH--HCCCCCCEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHHHHCCCCC---HHHHHHHHHHC
Q ss_conf 0145677766--303434167650443357302520--36-9886479998999999997278889---67899999975
Q gi|254780217|r 146 AANALLKSLE--EPPQKVLFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALEQLKIMGW---DSKRDFVKIAA 217 (347)
Q Consensus 146 AaNALLK~LE--EPp~~t~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~~~~~~~~---~~~~~~~~~~s 217 (347)
.-|-||--|. ++.+..++|=.||-|+.+-+.+.- |. +++.++.|+..--.++|+....++. +-+...+ +
T Consensus 423 TlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~ii---A 499 (752)
T KOG0734 423 TLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKII---A 499 (752)
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHH---C
T ss_conf 9999999842867688669995168745556873488755336746897733289999999834876567787672---2
Q ss_pred CCCHH----HHHHHHCC
Q ss_conf 98978----99988145
Q gi|254780217|r 218 YGSVA----RAIKILHY 230 (347)
Q Consensus 218 ~Gs~~----~A~~ll~~ 230 (347)
.|.|| +..+++|+
T Consensus 500 RGT~GFsGAdLaNlVNq 516 (752)
T KOG0734 500 RGTPGFSGADLANLVNQ 516 (752)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 68898765789988889
No 108
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.45 E-value=1.3e-05 Score=64.74 Aligned_cols=132 Identities=15% Similarity=0.303 Sum_probs=89.1
Q ss_pred HHHCCHHHHHHHHHHHHHCCC--------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHH
Q ss_conf 561092999999999998288--------981663117989888999999999981779988643121012678867999
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR--------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~--------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~ 83 (347)
..|+||++++..+.+++...| ..-++||.||.|+|||-+|..+|..| . ...-...+.+.. -.|.+.+.
T Consensus 458 ~~viGQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L-~-~~lir~DMSEy~--e~hsvsrL 533 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-G-IELLRFDMSEYM--ERHTVSRL 533 (758)
T ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH-H-HHHHCCCHHHHC--CHHHHHHH
T ss_conf 7874549999999999999863888999970589997899877799999999998-6-677214266531--20147774
Q ss_pred HHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC-----
Q ss_conf 967898754530010001013421232378875544310222111121035322055424000145677766303-----
Q gi|254780217|r 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP----- 158 (347)
Q Consensus 84 i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp----- 158 (347)
+ |+-|.|.=.+ + +| .-.+.| ...| |-|+++|++|.-+.+-.|.||-+|+|--
T Consensus 534 i--GaPPGYVGy~----e-GG-----~Lte~V-------r~~P----ysVvL~DEIEKAhpdV~nilLQvlD~G~LtD~~ 590 (758)
T PRK11034 534 I--GAPPGYVGFD----Q-GG-----LLTDAV-------IKHP----HAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNN 590 (758)
T ss_pred C--CCCCCCCCCC----C-CC-----CCCHHH-------HHCC----CEEEEEHHHHHHCHHHHHHHHHHCCCCCCCCCC
T ss_conf 4--8998666767----7-77-----012878-------7398----779973367563989999887323778301799
Q ss_pred ------CCCCEEEEECCC
Q ss_conf ------434167650443
Q gi|254780217|r 159 ------QKVLFILISHAS 170 (347)
Q Consensus 159 ------~~t~fiLit~~~ 170 (347)
.||++|++||=-
T Consensus 591 Gr~vdF~NtiIImTSN~G 608 (758)
T PRK11034 591 GRKADFRNVVLVMTTNAG 608 (758)
T ss_pred CCEEECEEEEEEEECCCC
T ss_conf 998844001999825617
No 109
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.5e-06 Score=72.39 Aligned_cols=159 Identities=20% Similarity=0.275 Sum_probs=94.8
Q ss_pred HHCCHHHHHHHHHHHHHC----CCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCC
Q ss_conf 610929999999999982----8898-16631179898889999999999817799886431210126788679999678
Q gi|254780217|r 13 RLFGHEDIEKFLSQYYCS----GRMH-HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 (347)
Q Consensus 13 ~i~G~~~~~~~L~~~~~~----~~l~-ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (347)
+=+|-+.+++.+...+.- +.+- .=+.|+||||+|||+++..+|+++--..- .-..|.....+.=+-.|+-.-|
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv--R~sLGGvrDEAEIRGHRRTYIG 401 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV--RISLGGVRDEAEIRGHRRTYIG 401 (782)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE--EEECCCCCCHHHHCCCCCCCCC
T ss_conf 55671168999999999998614678857999789988701189999999589779--9954765427775355312335
Q ss_pred CCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH----HHHHHHHHHHH--------
Q ss_conf 987545300100010134212323788755443102221111210353220554240----00145677766--------
Q gi|254780217|r 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR----NAANALLKSLE-------- 155 (347)
Q Consensus 88 ~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----~AaNALLK~LE-------- 155 (347)
+-|.= ++.-+...-.. .=|+++|++|.|+. +-|-|||-.|-
T Consensus 402 aMPGr-------------------------IiQ~mkka~~~--NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~ 454 (782)
T COG0466 402 AMPGK-------------------------IIQGMKKAGVK--NPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFS 454 (782)
T ss_pred CCCHH-------------------------HHHHHHHHCCC--CCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHH
T ss_conf 68728-------------------------99999986776--8747864033316777788688888626976567612
Q ss_pred -----HCC--CCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHH
Q ss_conf -----303--434167650443357302520369886479998999999997
Q gi|254780217|r 156 -----EPP--QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 (347)
Q Consensus 156 -----EPp--~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~ 200 (347)
.|= +++.||.++|+.+.|+.+++-|.-.++++.-++++-.++-+.
T Consensus 455 DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~ 506 (782)
T COG0466 455 DHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKR 506 (782)
T ss_pred HCCCCCCCCHHHEEEEEECCCCCCCCHHHHCCEEEEEECCCCHHHHHHHHHH
T ss_conf 2201676644325888603751329867843030564268886999999998
No 110
>PRK05642 DNA replication initiation factor; Validated
Probab=98.42 E-value=1.6e-05 Score=64.03 Aligned_cols=177 Identities=16% Similarity=0.210 Sum_probs=109.3
Q ss_pred CCHHHHC-C-HHHHHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 7565610-9-299999999999828--89816631179898889999999999817799886431210126788679999
Q gi|254780217|r 9 VYNQRLF-G-HEDIEKFLSQYYCSG--RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM 84 (347)
Q Consensus 9 ~~~~~i~-G-~~~~~~~L~~~~~~~--~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i 84 (347)
.+|+.++ | ...+...+....+.. ..+..+.+|||+|+||+-+..+.+.....
T Consensus 16 ~tfdnFi~g~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~------------------------ 71 (234)
T PRK05642 16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQ------------------------ 71 (234)
T ss_pred CCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH------------------------
T ss_conf 77303571875999999999876067877883899889999889999999999980------------------------
Q ss_pred HCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHCC-CCC
Q ss_conf 678987545300100010134212323788755443102221111210353220554240--00145677766303-434
Q gi|254780217|r 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEPP-QKV 161 (347)
Q Consensus 85 ~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEPp-~~t 161 (347)
.....+++....- .+.--++.+. ....-+++||++|.+.. ..+.+|-.++..-- .+.
T Consensus 72 ---~~~~~~yl~~~~~-----------~~~~~~~~~~------l~~~d~l~IDDi~~i~g~~~~e~~lF~l~N~~~~~~~ 131 (234)
T PRK05642 72 ---RGEPAVYLPLAEL-----------LDRGPELLDN------LEQYELVCIDDLDVIAGKADWEEALFHLFNRLRDSGR 131 (234)
T ss_pred ---CCCCEEEEEHHHH-----------HHHHHHHHHH------HHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf ---7996799789998-----------7544999862------4227989893645546885999999999999998399
Q ss_pred CEEEEECCCC----CCCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 1676504433----5730252036---9886479998999999997----27888967899999975989789998814
Q gi|254780217|r 162 LFILISHASP----TILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 162 ~fiLit~~~~----~il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
.++++++.+- -.+|-++||. ..+.+++++.++..++|.. .+...+++..++++.-...+++....+++
T Consensus 132 ~llits~~~P~~l~~~l~DL~SRl~~~~~~~i~~l~d~~~~~iL~~~a~~rgi~l~~~v~~yl~~r~~R~~~~L~~~l~ 210 (234)
T PRK05642 132 RLLLAASKSPRELPVKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred EEEEECCCCHHHHCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 5999578795552300167999995781275148998999999999977546899989999999973588999999999
No 111
>PRK05629 hypothetical protein; Validated
Probab=98.41 E-value=0.00017 Score=55.80 Aligned_cols=158 Identities=12% Similarity=0.094 Sum_probs=113.2
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCC--CEEEECCCCHHHCCCCCCCC
Q ss_conf 9816631179898889999999999817799886431210126788679999678987--54530010001013421232
Q gi|254780217|r 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH--DFLYLSYSLNPKTGKWRTVI 110 (347)
Q Consensus 33 l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hp--d~~~i~~~~~~k~~~~~~~I 110 (347)
-|+-|||+|+..-=....-..+...+.... .... ++..+. .+.+
T Consensus 15 ~pPvYLl~G~E~yLid~a~~~l~~~i~~~~------------------------~~~~~~n~~~~~----------~~e~ 60 (331)
T PRK05629 15 QPAVHLVLGEDEFLAERARINIVHDIRSSM------------------------ASPDSLQVTTLK----------ASEI 60 (331)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHC------------------------CCCCCCEEEEEE----------CCCC
T ss_conf 999799971719999999999999998628------------------------874462258850----------7879
Q ss_pred CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCC---CCCHHHHCEEEEEECC
Q ss_conf 3788755443102221111210353220554240001456777663034341676504433---5730252036988647
Q gi|254780217|r 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP---TILSTIRSRCLSIKFN 187 (347)
Q Consensus 111 ~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~---~il~TI~SRc~~i~f~ 187 (347)
+.+++-+. .+ .|..+..|+|||.+++..+.+....++.-+++|++.|+++++....+ ++..+|+.-...+.+.
T Consensus 61 ~~~~l~~a---~~-~~~F~~~RlVvv~~~~~~~~~~~d~ll~y~~~p~p~t~LV~~~~~~dkrkkl~k~l~k~g~v~e~~ 136 (331)
T PRK05629 61 TQGELLDA---LS-PSLFAEDRVVVLTNMDQAGQDAVDLALSAAVDPSPGTYLIVMHSGGGRSKSMVKKLEKVAVVHDAA 136 (331)
T ss_pred CHHHHHHH---CC-CCCCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCEEEEECC
T ss_conf 99999987---37-588888259999572530644799999984199996499998458751067999986074698668
Q ss_pred CCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9998999999997----2788896789999997598978999881
Q gi|254780217|r 188 SLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKIL 228 (347)
Q Consensus 188 ~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll 228 (347)
++.+.++..|+.+ .+..+++++...+......+.+...+-+
T Consensus 137 ~l~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~G~DL~~l~~El 181 (331)
T PRK05629 137 KLKDRDRPGWVKQEFKNHKVQVTPDVIHALLEGVGSDLRELASAV 181 (331)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 899999999999999986999799999999999680499999999
No 112
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.41 E-value=8.4e-06 Score=66.36 Aligned_cols=134 Identities=16% Similarity=0.258 Sum_probs=91.4
Q ss_pred HHHCCHHHHHHHHHHHHHCCC--------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC-CCCHHHH
Q ss_conf 561092999999999998288--------9816631179898889999999999817799886431210126-7886799
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR--------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD-PCSPFVK 82 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~--------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~-~~~~~~~ 82 (347)
..|+||++++..+.+++...| .--++||.||.|+|||-+|..+|..++..+. .--.-.++.- -.|.+.+
T Consensus 509 ~~ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~--~liR~DMSEy~E~hsvsr 586 (823)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEE--AMIRLDMSEYMEKHTVSK 586 (823)
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC--CEEEECCCCCCCCCCHHH
T ss_conf 784076999999999999997089989997468998789988779999999999747820--258853510155420767
Q ss_pred HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC----
Q ss_conf 9967898754530010001013421232378875544310222111121035322055424000145677766303----
Q gi|254780217|r 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP---- 158 (347)
Q Consensus 83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp---- 158 (347)
.+ |+-|.|.=.+ + +| .-.+.| ..+| |-|+++|++|.-+.+-.|-||-+|+|--
T Consensus 587 LI--GaPPGYVGy~----e-GG-----~LTeaV-------rr~P----ysVvLfDEIEKAHpdV~nilLQvlDdG~LtD~ 643 (823)
T CHL00095 587 LI--GSPPGYVGYN----E-GG-----QLTEAV-------RKKP----YTVVLFDEIEKAHPDIFNLLLQILDDGRLTDS 643 (823)
T ss_pred HC--CCCCCCCCCC----C-CC-----CHHHHH-------HCCC----CEEEEECHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf 45--8998766778----7-88-----201988-------7199----86998621311388999988765168843489
Q ss_pred -------CCCCEEEEECCC
Q ss_conf -------434167650443
Q gi|254780217|r 159 -------QKVLFILISHAS 170 (347)
Q Consensus 159 -------~~t~fiLit~~~ 170 (347)
.||++|++||=-
T Consensus 644 ~Gr~vdF~NtIIImTSNlG 662 (823)
T CHL00095 644 KGRTIDFKNTLIIMTSNLG 662 (823)
T ss_pred CCCEEECEEEEEEECCCCC
T ss_conf 9998843103999716505
No 113
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.41 E-value=1.7e-05 Score=63.91 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=112.8
Q ss_pred CCCHHHHC-CHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 87565610-92999-99999999828898166311798988899999999998177998864312101267886799996
Q gi|254780217|r 8 PVYNQRLF-GHEDI-EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA 85 (347)
Q Consensus 8 p~~~~~i~-G~~~~-~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (347)
+.+|+.++ |..+. ...+..... +.-...+.+|||+|+||+-+..+++.......
T Consensus 18 ~~tfdnFi~g~n~~~~~al~~~~~-~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~----------------------- 73 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNVLR-QEHSGYIYLWGREGAGRSHLLHAACAELSQRG----------------------- 73 (235)
T ss_pred CCCHHCCCCCCCHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-----------------------
T ss_conf 766302344886999999999985-78987699989999888999999999997079-----------------------
Q ss_pred CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHCC--CCC
Q ss_conf 78987545300100010134212323788755443102221111210353220554240--00145677766303--434
Q gi|254780217|r 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEPP--QKV 161 (347)
Q Consensus 86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEPp--~~t 161 (347)
....++... ... .. ..++ .+.+ ...-+++||++|.+.. ..+.+|-.++-+-- .++
T Consensus 74 ----~~~~yl~~~--~~~-----~~-~~~~---l~~l------~~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~ 132 (235)
T PRK08084 74 ----DAVGYVPLD--KRA-----WF-VPEV---LEGM------EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKT 132 (235)
T ss_pred ----CCEEEEEHH--HHH-----HH-HHHH---HHHH------HHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf ----857998779--866-----51-7999---9876------4189899827455469978999999999999984896
Q ss_pred CEEEEECCCC-C---CCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 1676504433-5---730252036---9886479998999999997----27888967899999975989789998814
Q gi|254780217|r 162 LFILISHASP-T---ILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 162 ~fiLit~~~~-~---il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
.++++++.+- . .+|=++||. ..+.+.+++.++..++|.. .+...+++..++++.-...+++.....++
T Consensus 133 ~ll~ts~~~P~~l~~~l~DL~SRl~~g~~~~i~~~dde~~~~iL~~~a~~rgl~l~~~V~~yl~~~~~R~~~~L~~~l~ 211 (235)
T PRK08084 133 RLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred EEEEECCCCHHHCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 6999679882430231288999995697278559998999999999999739999989999999861588999999999
No 114
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=98.39 E-value=1.2e-05 Score=65.26 Aligned_cols=212 Identities=17% Similarity=0.188 Sum_probs=122.8
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCE-------EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 55558756561092999999999998288981-------66311798988899999999998177998864312101267
Q gi|254780217|r 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHH-------ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 4 ~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~h-------a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
.||.|....++.-|+.-++....++.+.-|+. -+|++||+||||+|+...+|+-+--.-...-.|...-....
T Consensus 81 eKykP~~~~~lAvHK~Ki~~v~~wl~a~~Le~~~~rGGs~LLi~GPsGCgKsT~~k~LsKelg~~~~ew~Np~~~~~~~n 160 (670)
T TIGR00602 81 EKYKPETQEELAVHKKKIEEVEEWLKAQVLESAKKRGGSILLITGPSGCGKSTTIKILSKELGIKVQEWLNPVLLKEQKN 160 (670)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 02675424577664777999999975200204566775378841755884478999998886445655407878888851
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHH------HHHCCCC--CCCCCCHHHHHHHHHHCCH----
Q ss_conf 886799996789875453001000101342123237887554------4310222--1111210353220554240----
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI------RYFLSLT--ANTGYWRVIMIDPVDGMNR---- 144 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l------~~~~~~~--~~~~~~Ki~IId~ad~ln~---- 144 (347)
..+..--....-+.+ . +.. . ++.=.++ .+.+.+. -..+..|+++|++.=.+|.
T Consensus 161 ~~k~~~~~~~~f~~~----P--Y~s-------q--~e~f~efll~a~kY~~lQ~lG~~~~~~kk~Il~e~lPhln~F~~d 225 (670)
T TIGR00602 161 DEKDTLSLESKFSRF----P--YLS-------Q--IEVFSEFLLRATKYNKLQKLGDDLQTDKKLILVEDLPHLNKFYRD 225 (670)
T ss_pred HHHHHHHCCCCEEEC----C--CCC-------H--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHCCC
T ss_conf 244442125402216----7--631-------4--554678764212346664214110247545772137640221366
Q ss_pred -H--HHHHHHH-HHHHCCCCC-CEEEEECC-CCCC--------------C--HHH-----HC--EEEEEECCCCCHHHHH
Q ss_conf -0--0145677-766303434-16765044-3357--------------3--025-----20--3698864799989999
Q gi|254780217|r 145 -N--AANALLK-SLEEPPQKV-LFILISHA-SPTI--------------L--STI-----RS--RCLSIKFNSLSENNLY 195 (347)
Q Consensus 145 -~--AaNALLK-~LEEPp~~t-~fiLit~~-~~~i--------------l--~TI-----~S--Rc~~i~f~~l~~~~~~ 195 (347)
. ++.-.|+ .+-.-|.-. ++|.||.- ...| - .|| .- |...+.|+|+.+.-|.
T Consensus 226 ~~rr~~~~vlr~~~~~~g~~pPlv~~~te~~~~nlegdNnq~kfGir~~F~~~~IM~~~il~~pr~~~i~FNPiapT~mk 305 (670)
T TIGR00602 226 LDRRALREVLRTKYVSEGRLPPLVIIITESELNNLEGDNNQDKFGIRLLFPAVTIMNKEILEEPRVSNIKFNPIAPTLMK 305 (670)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCHHHHH
T ss_conf 12689999999986237898835899712434445775551010410135257775266540776131001787178999
Q ss_pred HHHHHH----------CCCC-CHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 999972----------7888-9678999999759897899988145
Q gi|254780217|r 196 KALEQL----------KIMG-WDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 196 ~~L~~~----------~~~~-~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
++|..+ .... .......+...+.|++|-||+-++-
T Consensus 306 K~L~~I~~~e~~~~~~K~~~~~~~~ve~~c~~~~GDiRSAInsLQf 351 (670)
T TIGR00602 306 KFLNRIVTKEAKKKGEKILVPKKTSVEDLCQGESGDIRSAINSLQF 351 (670)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9855562131434678544663468999971068847888888886
No 115
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=98.38 E-value=5e-05 Score=60.14 Aligned_cols=202 Identities=12% Similarity=0.055 Sum_probs=120.3
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCH
Q ss_conf 98166311798988899999999998177998864312101267886799996789875453001000101342123237
Q gi|254780217|r 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 (347)
Q Consensus 33 l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~v 112 (347)
||= |||||+..-=.......+...++.... ..-|+..++. . . .
T Consensus 1 ~Pv-Yll~GeE~~li~~~~~~i~~~~~~~~~------------------------~~fn~~~~dg-------~---e--~ 43 (326)
T PRK07452 1 MPI-YLYWGEDDFALNQAIEKLIDQVVDPEW------------------------KSFNYSRLDG-------D---D--A 43 (326)
T ss_pred CCE-EEEEECCHHHHHHHHHHHHHHCCCCCC------------------------CCCCEEEECC-------C---C--C
T ss_conf 988-999838289999999999996089544------------------------6762378737-------5---5--4
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH---HHHHHHHHHHHHCCCCCCEEEEECC-CC---CCCHHHHCEEEEEE
Q ss_conf 88755443102221111210353220554240---0014567776630343416765044-33---57302520369886
Q gi|254780217|r 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR---NAANALLKSLEEPPQKVLFILISHA-SP---TILSTIRSRCLSIK 185 (347)
Q Consensus 113 d~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~---~AaNALLK~LEEPp~~t~fiLit~~-~~---~il~TI~SRc~~i~ 185 (347)
+++.++...+..-|+.+++|+||+.+++.++. +....|.+.++.||+.|++|+++.. ++ ++-..+..-.....
T Consensus 44 ~~~~~~l~~a~T~Pf~~~~RlVvvk~a~~~~~~~~~~~~~l~~~l~~~p~~t~lv~~~~~k~D~R~K~~K~l~k~~~~~e 123 (326)
T PRK07452 44 EQAIQALNEAMTPPFGSGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKE 123 (326)
T ss_pred CHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHEEEEE
T ss_conf 25999999862788778855999836610024878899999998617999759999846763237787899984011345
Q ss_pred CCCC---CHHHHHHHHH----HHCCCCCHHHHHHHHHHCCCCHHHHHHHH-------CCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 4799---9899999999----72788896789999997598978999881-------45779999999998403234322
Q gi|254780217|r 186 FNSL---SENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIKIL-------HYDCDKIISSYIDLIHIPRQEYA 251 (347)
Q Consensus 186 f~~l---~~~~~~~~L~----~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll-------~~~~~~~~~~~~~~l~~~~~~~~ 251 (347)
|..+ ..+++.+|+. ..+..++.+++..+.....++.+...+-+ .++...+-...++.+.. ..+.
T Consensus 124 f~~~~~~~~~~l~~wi~~~~~~~g~~i~~~a~~~Lv~~~G~dl~~l~~EleKL~ly~~~~~~~It~e~V~~lv~-~~~~- 201 (326)
T PRK07452 124 FSLPPPWDGEGQKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSEKPISAEDVKALVS-NTTQ- 201 (326)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC-CCCC-
T ss_conf 40688657999999999999986999899999999998684399999999999986289997068999998827-7644-
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 899999999983167699999999
Q gi|254780217|r 252 LQKMQQIADELLSQDQKIAFDFLI 275 (347)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~ 275 (347)
.+.++.+.+...+....+..+-
T Consensus 202 --~iF~L~dAi~~~~~~~Al~~l~ 223 (326)
T PRK07452 202 --NSLQLADALLQGNTGEALALID 223 (326)
T ss_pred --CHHHHHHHHHCCCHHHHHHHHH
T ss_conf --0999999998689999999999
No 116
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.38 E-value=0.00061 Score=51.39 Aligned_cols=191 Identities=15% Similarity=0.192 Sum_probs=121.7
Q ss_pred HHHCCHHHHHHHHHHHHHCC----CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCC
Q ss_conf 56109299999999999828----89816631179898889999999999817799886431210126788679999678
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSG----RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~----~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (347)
..+.|.++..+...+.+.++ --...+-++|.||+|||.+.+...+.|- ....+|
T Consensus 267 e~lpcRe~E~~~I~~Fie~~i~q~GtG~cLYISGVPGTGKTATV~eVIr~L~----------------------~~~~~~ 324 (650)
T PTZ00112 267 EYILGREKEAKEIRTFLETGIKQGGTGQILYISGVPGTGKTATVYMVIKELQ----------------------NKKLKG 324 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH----------------------HHHHCC
T ss_conf 4477707899999999986411688665699978999980036999999999----------------------999708
Q ss_pred CCCCEEEECCCCH--------------HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 9875453001000--------------10134212323788755443102221111210353220554240001456777
Q gi|254780217|r 88 ALHDFLYLSYSLN--------------PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS 153 (347)
Q Consensus 88 ~hpd~~~i~~~~~--------------~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~ 153 (347)
.-|++.+++-.-. .=.++ +..-.......|.+.++. .-...|+++|+.|.|=..-|+-|--.
T Consensus 325 ~lp~F~fVEINGMkLt~P~qaY~~L~e~Ltg~-k~~~~~~A~~lL~k~F~~---~r~p~VlLvDELD~LvTkkQ~VlYNL 400 (650)
T PTZ00112 325 QLPWFNLFEINGVNLVHPNAAYRVFYKKLFNK-KPPNALNSYKELDKLFNN---NRTPSILIVDEADYIVTKTQKVLFTL 400 (650)
T ss_pred CCCCCEEEEECCEECCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHCC---CCCCEEEEECHHHHHHHCCCCEEEEC
T ss_conf 99981599973637798788999999998489-888678999999998268---99718999715777763677457773
Q ss_pred HHHCC-CCCCEEEE--EC---CCCCCCHHHHCEE--EEEECCCCCHHHHHHHHHHHC---CCCCHHHHHHHHH---HCCC
Q ss_conf 66303-43416765--04---4335730252036--988647999899999999727---8889678999999---7598
Q gi|254780217|r 154 LEEPP-QKVLFILI--SH---ASPTILSTIRSRC--LSIKFNSLSENNLYKALEQLK---IMGWDSKRDFVKI---AAYG 219 (347)
Q Consensus 154 LEEPp-~~t~fiLi--t~---~~~~il~TI~SRc--~~i~f~~l~~~~~~~~L~~~~---~~~~~~~~~~~~~---~s~G 219 (347)
++=|. +++.+|.+ +| =|++++|-|.||- .++.|+|-+.+++.+++..-. ....+++.++.++ .-.|
T Consensus 401 FdWPT~~~SkLIVIaIANTMDLPERL~~RVsSRLGltRltF~PYt~~QL~eII~sRL~~~~~f~~dAIQl~ARKVAavSG 480 (650)
T PTZ00112 401 FDWPTKKNSKLILIIISNTMDLPYKMKPSCRSRLAFGRLVFSPYKYQQIEKVIKERLENCEIIDHTALQLCARRVTNYSG 480 (650)
T ss_pred CCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 66889888707999985067860656666555228850043998999999999998626777887899999888875031
Q ss_pred CHHHHHHHH
Q ss_conf 978999881
Q gi|254780217|r 220 SVARAIKIL 228 (347)
Q Consensus 220 s~~~A~~ll 228 (347)
+.|+|+.+-
T Consensus 481 DARRALdIC 489 (650)
T PTZ00112 481 DMRKALQIC 489 (650)
T ss_pred HHHHHHHHH
T ss_conf 489999999
No 117
>KOG0742 consensus
Probab=98.38 E-value=2.9e-06 Score=70.09 Aligned_cols=154 Identities=23% Similarity=0.337 Sum_probs=102.8
Q ss_pred HHHHCCHHHHHHH---HHHHHHCCCCC----EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHH
Q ss_conf 6561092999999---99999828898----1663117989888999999999981779988643121012678867999
Q gi|254780217|r 11 NQRLFGHEDIEKF---LSQYYCSGRMH----HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 (347)
Q Consensus 11 ~~~i~G~~~~~~~---L~~~~~~~~l~----ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~ 83 (347)
|..||-|...... |..+..+-+.| ..+|||||||+||+.+|+.+|+.- + -++ ..
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S----G-lDY--------------A~ 414 (630)
T KOG0742 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS----G-LDY--------------AI 414 (630)
T ss_pred CCCEECCHHHHHHHHHHHHHHCCCCCCCCHHHHEEEECCCCCCHHHHHHHHHHHC----C-CCE--------------EH
T ss_conf 6784127779999999988740430024304400324799986049999998852----8-741--------------00
Q ss_pred HHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH---------CC---HHHHHHHH
Q ss_conf 9678987545300100010134212323788755443102221111210353220554---------24---00014567
Q gi|254780217|r 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDG---------MN---RNAANALL 151 (347)
Q Consensus 84 i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~---------ln---~~AaNALL 151 (347)
+..| |+--+. . =.|-.|.++-.|...+ -.| =+++||+||. |+ .+|.||||
T Consensus 415 mTGG---DVAPlG--------~----qaVTkiH~lFDWakkS-~rG--LllFIDEADAFLceRnktymSEaqRsaLNAlL 476 (630)
T KOG0742 415 MTGG---DVAPLG--------A----QAVTKIHKLFDWAKKS-RRG--LLLFIDEADAFLCERNKTYMSEAQRSALNALL 476 (630)
T ss_pred HCCC---CCCCCH--------H----HHHHHHHHHHHHHHHC-CCC--EEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 1378---755521--------7----8899999987887515-664--49986116789987520102588999998898
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCHHHHCEE-EEEECCCCCHHHHHHHHHHH
Q ss_conf 776630343416765044335730252036-98864799989999999972
Q gi|254780217|r 152 KSLEEPPQKVLFILISHASPTILSTIRSRC-LSIKFNSLSENNLYKALEQL 201 (347)
Q Consensus 152 K~LEEPp~~t~fiLit~~~~~il~TI~SRc-~~i~f~~l~~~~~~~~L~~~ 201 (347)
=---+-+...++.|.||.|..+-..+--|. ..+.|.-|.+++-.+.|..+
T Consensus 477 fRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lY 527 (630)
T KOG0742 477 FRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLY 527 (630)
T ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHH
T ss_conf 762565542689960588321016787655541306899778999999999
No 118
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=98.38 E-value=2.7e-06 Score=70.30 Aligned_cols=132 Identities=17% Similarity=0.283 Sum_probs=92.2
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHC--------CCCCEEEEECCCCCCCHHHHHHHHHHHHHC---CCCCCCCCHHHCCCC
Q ss_conf 587565610929999999999982--------889816631179898889999999999817---799886431210126
Q gi|254780217|r 7 DPVYNQRLFGHEDIEKFLSQYYCS--------GRMHHALLFEGEQGIGKATLGFRYAGHVLQ---NPDFSKAPVRMCNPD 75 (347)
Q Consensus 7 ~p~~~~~i~G~~~~~~~L~~~~~~--------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc---~~~~~~~~~~~~~~~ 75 (347)
.+.--+.|+||+.+++.|..+++. +|.--++||+||-|||||-+|+.+|+.|== -.+-+.+--.
T Consensus 492 ~~~L~~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDMSEYmEK----- 566 (774)
T TIGR02639 492 EKELKAKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSEYMEK----- 566 (774)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCHHHHHH-----
T ss_conf 476301315158999999999999874247788816888864798962578899999970820010465044689-----
Q ss_pred CCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 78867999967898754530010001013421232378875544310222111121035322055424000145677766
Q gi|254780217|r 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 (347)
Q Consensus 76 ~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE 155 (347)
|-+.|+| |+=|.|+=+ ++. | .|-+-+. .+++-|+++||+|+=+.+=.|-||=+|=
T Consensus 567 --HTVsRLI--GsPPGYVGf----EqG-G------------LLT~Avr----K~P~cVLLLDEIEKAHpDI~NILLQVMD 621 (774)
T TIGR02639 567 --HTVSRLI--GSPPGYVGF----EQG-G------------LLTDAVR----KHPHCVLLLDEIEKAHPDIYNILLQVMD 621 (774)
T ss_pred --HHHHHHH--CCCCCCCCC----CCC-C------------CCHHHHC----CCCCEEEHHHHHHHHHHHHHHHHHHHHC
T ss_conf --9998741--688885131----677-7------------2122331----2885354234666631336667876633
Q ss_pred HCC-----------CCCCEEEEEC
Q ss_conf 303-----------4341676504
Q gi|254780217|r 156 EPP-----------QKVLFILISH 168 (347)
Q Consensus 156 EPp-----------~~t~fiLit~ 168 (347)
--. .|+++|++||
T Consensus 622 ~AtLTDN~GrKaDFRNVILIMTSN 645 (774)
T TIGR02639 622 YATLTDNNGRKADFRNVILIMTSN 645 (774)
T ss_pred CCEEECCCCCEEEECCEEEEECCC
T ss_conf 543405888576311368884037
No 119
>PRK08727 hypothetical protein; Validated
Probab=98.37 E-value=3.2e-05 Score=61.71 Aligned_cols=176 Identities=15% Similarity=0.181 Sum_probs=108.4
Q ss_pred CCHHHHCCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCC
Q ss_conf 7565610929-999999999982889816631179898889999999999817799886431210126788679999678
Q gi|254780217|r 9 VYNQRLFGHE-DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 (347)
Q Consensus 9 ~~~~~i~G~~-~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (347)
.+|+.+++-. .....+... ..+.-++-+.+|||+|+||+-++.+++...-..
T Consensus 16 ~tfdnFi~~~n~~~a~l~~~-~~~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~-------------------------- 68 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQAL-AAGQSSDWLYLSGPAGTGKTHLALSLCAAAEQA-------------------------- 68 (233)
T ss_pred CCHHHCCCCCHHHHHHHHHH-HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC--------------------------
T ss_conf 24212067855999999987-438888989998999998899999999999827--------------------------
Q ss_pred CCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHCC-CCCCEE
Q ss_conf 987545300100010134212323788755443102221111210353220554240--00145677766303-434167
Q gi|254780217|r 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEPP-QKVLFI 164 (347)
Q Consensus 88 ~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEPp-~~t~fi 164 (347)
.....++... .. .+..+++.+. ....-++.||++|.+.. +.+-+|-.+...-- .++.++
T Consensus 69 -~~~~~yl~l~--~~---------~~~~~~~l~~------le~~~ll~iDDid~i~g~~~~e~aLFhL~N~~~~~~~~ll 130 (233)
T PRK08727 69 -GRSSAYLPLQ--AA---------AGRLRDALEA------LEGRSLVALDGVDSIAGQREDEVALFDFHNRARAAGITLL 130 (233)
T ss_pred -CCCEEEEEHH--HH---------HHHHHHHHHH------HCCCCEEEEECCHHCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf -9972884478--85---------3202567753------1038978985501126982799999999999986198389
Q ss_pred EEECCC-C---CCCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 650443-3---5730252036---9886479998999999997----27888967899999975989789998814
Q gi|254780217|r 165 LISHAS-P---TILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 165 Lit~~~-~---~il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
++++.+ . -.+|-++||. ..+.+++++.++...+|.+ .+...+++..+++..-..-++..+..+++
T Consensus 131 ~ts~~~P~~l~~~l~DL~SRL~~~~~~~l~~~dD~~~~~iL~~~a~~rgl~l~~~V~~Yll~r~~R~~~~l~~~l~ 206 (233)
T PRK08727 131 YTARQMPDGLALVLPDLRSRLSQCIRIGLPVLDDVARAAVLRDRAQRRGLALDEAAIDWLLTHGERELAGLVALLD 206 (233)
T ss_pred EECCCCHHHHCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9779895662310021999996692288578897999999999999869999989999999856889999999999
No 120
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.32 E-value=4e-05 Score=60.91 Aligned_cols=185 Identities=17% Similarity=0.178 Sum_probs=106.4
Q ss_pred CHHHH-CCHHHHHH-HHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 56561-09299999-99999982--8898166311798988899999999998177998864312101267886799996
Q gi|254780217|r 10 YNQRL-FGHEDIEK-FLSQYYCS--GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA 85 (347)
Q Consensus 10 ~~~~i-~G~~~~~~-~L~~~~~~--~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (347)
+|+.+ +|..+... .+...+.. +.--+.+.+|||+|+||+.+..+++..........
T Consensus 6 TFdnF~vg~~N~~a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~-------------------- 65 (219)
T pfam00308 6 TFENFVIGSSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNL-------------------- 65 (219)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC--------------------
T ss_conf 710202368389999999999967587678269988999988899999999999849998--------------------
Q ss_pred CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHH--HHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHCCC-C
Q ss_conf 78987545300100010134212323788755--443102221111210353220554240--001456777663034-3
Q gi|254780217|r 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEPPQ-K 160 (347)
Q Consensus 86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~--l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEPp~-~ 160 (347)
.+.+++.. +-.. -.++-+++ +..+ .......-+++||++|.+.. ..+.+|.-++..--. +
T Consensus 66 -----~v~yl~~~--~~~~-----~~~~~l~~~~~~~f---~~~l~~~d~l~iDDi~~l~~~~~~ee~lf~l~N~~~~~~ 130 (219)
T pfam00308 66 -----RVVYLTSE--EFLN-----DFVDALRDNKIEAF---KKSYRNVDLLLIDDIQFLAGKEKTQEEFFHTFNALHENN 130 (219)
T ss_pred -----EEEEEEHH--HHHH-----HHHHHHHCCCHHHH---HHHHHHCCHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf -----28884399--9999-----88999981888899---999763233652236765686478999999999999729
Q ss_pred CCEEEEECCC-C---CCCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 4167650443-3---5730252036---9886479998999999997----27888967899999975989789998814
Q gi|254780217|r 161 VLFILISHAS-P---TILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 161 t~fiLit~~~-~---~il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
..++++++.+ . ..++-++||+ ..+.+.+|+.++..++|.+ .+..++++..++++.-..++++.....++
T Consensus 131 ~~lllts~~~p~~l~~~~~dL~SRL~~g~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v~~yl~~r~~R~~r~L~~~L~ 210 (219)
T pfam00308 131 KQIVLTSDRPPKELEGFEDRLRSRFEWGLIIAIEPPDLETRLAILRKKAEEENINIPNEVLNFIAQRITDNVRELEGALN 210 (219)
T ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 86999779981002453277999986875661169999999999999999849999999999999842798999999999
No 121
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.31 E-value=0.00043 Score=52.60 Aligned_cols=191 Identities=15% Similarity=0.138 Sum_probs=115.4
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 6555587565610929999999999982-889816631179898889999999999817799886431210126788679
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~ 81 (347)
..+|..-+|-.=-+...+.....+..+. |+.-+-+.+|||.|.|||-++.++....+...
T Consensus 81 ~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~------------------- 141 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANG------------------- 141 (408)
T ss_pred CCCCCHHHEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-------------------
T ss_conf 9888554220477449999999998756688689579987999978999999999998629-------------------
Q ss_pred HHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHH--HHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHC
Q ss_conf 999678987545300100010134212323788755--443102221111210353220554240--0014567776630
Q gi|254780217|r 82 KQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEP 157 (347)
Q Consensus 82 ~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~--l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEP 157 (347)
-++-++++..+ .-... -|..+|+ +.+| +-.. ..-+++||+++.+.. ..+.+|--|..+-
T Consensus 142 ------~~a~v~y~~se--~f~~~-----~v~a~~~~~~~~F---k~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l 204 (408)
T COG0593 142 ------PNARVVYLTSE--DFTND-----FVKALRDNEMEKF---KEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNAL 204 (408)
T ss_pred ------CCCEEEECCHH--HHHHH-----HHHHHHHHHHHHH---HHHH-CCCEEEECHHHHHCCCHHHHHHHHHHHHHH
T ss_conf ------98648850489--98999-----9999885048888---8764-267355513867567715799999999988
Q ss_pred CCCC-CEEEEECCC-C---CCCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 3434-167650443-3---5730252036---9886479998999999997----2788896789999997598978999
Q gi|254780217|r 158 PQKV-LFILISHAS-P---TILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAI 225 (347)
Q Consensus 158 p~~t-~fiLit~~~-~---~il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~ 225 (347)
..+. .+++++..+ . .+.|-++||. ..+.+.||+.+....+|.. .+..++++...+++..-..+++.+.
T Consensus 205 ~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLe 284 (408)
T COG0593 205 LENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELE 284 (408)
T ss_pred HHCCCEEEEECCCCCHHHCCCCHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHH
T ss_conf 85088799970788322110358899898630577527988899999999999865888887999999997003099999
Q ss_pred HHHC
Q ss_conf 8814
Q gi|254780217|r 226 KILH 229 (347)
Q Consensus 226 ~ll~ 229 (347)
-.++
T Consensus 285 gaL~ 288 (408)
T COG0593 285 GALN 288 (408)
T ss_pred HHHH
T ss_conf 9999
No 122
>KOG2004 consensus
Probab=98.31 E-value=1.6e-05 Score=64.08 Aligned_cols=157 Identities=23% Similarity=0.328 Sum_probs=97.0
Q ss_pred HHHCCHHHHHHHHHHHHHCCCCC-----EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHC
Q ss_conf 56109299999999999828898-----1663117989888999999999981779988643121012678867999967
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGRMH-----HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS 86 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~l~-----ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (347)
.+=+|-+++++.....+.-++|- --+-|+||||+||++.|+.+|++|.-..- ....|.. +-.-+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf--RfSvGG~--------tDvAeI 480 (906)
T KOG2004 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF--RFSVGGM--------TDVAEI 480 (906)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEE--EEECCCC--------CCHHHH
T ss_conf 653016889999999999875146678837998689987732189999998487469--9853663--------427764
Q ss_pred CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH----HHHHHHHHHHHHCC----
Q ss_conf 8987545300100010134212323788755443102221111210353220554240----00145677766303----
Q gi|254780217|r 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR----NAANALLKSLEEPP---- 158 (347)
Q Consensus 87 ~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----~AaNALLK~LEEPp---- 158 (347)
.-|..-++ . .++. .++.-+-..-.++ -+++||++|.+-. +-+-|||-.|- |-
T Consensus 481 kGHRRTYV-G--AMPG--------------kiIq~LK~v~t~N--PliLiDEvDKlG~g~qGDPasALLElLD-PEQNan 540 (906)
T KOG2004 481 KGHRRTYV-G--AMPG--------------KIIQCLKKVKTEN--PLILIDEVDKLGSGHQGDPASALLELLD-PEQNAN 540 (906)
T ss_pred CCCCEEEE-C--CCCH--------------HHHHHHHHHCCCC--CEEEEEHHHHHCCCCCCCHHHHHHHHCC-HHHCCC
T ss_conf 25421100-1--4884--------------8999998617788--6588532234178877986899987439-653553
Q ss_pred ------------CCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH
Q ss_conf ------------4341676504433573025203698864799989999999
Q gi|254780217|r 159 ------------QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 (347)
Q Consensus 159 ------------~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L 198 (347)
+.++||-++|..+.|+|+++-|--.+.++.-..++-.++-
T Consensus 541 FlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA 592 (906)
T KOG2004 541 FLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIA 592 (906)
T ss_pred HHHHCCCCCCCHHHEEEEEECCCCCCCCHHHHHHHHEEECCCCCHHHHHHHH
T ss_conf 4542026642111068898536445698566412232203672279899999
No 123
>KOG0733 consensus
Probab=98.31 E-value=2.4e-05 Score=62.73 Aligned_cols=182 Identities=20% Similarity=0.189 Sum_probs=112.3
Q ss_pred CHHHHCCHHHHHHHHHHHHHC-----------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 565610929999999999982-----------889816631179898889999999999817799886431210126788
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCS-----------GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~-----------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~ 78 (347)
+|++|=|-+.....|-..+-. -+.|.++|||||||+|||.+|.++|..+=- |
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-------P---------- 250 (802)
T KOG0733 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-------P---------- 250 (802)
T ss_pred CHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCC-------C----------
T ss_conf 36541673899999999998852811686628779975164489986478999997521288-------5----------
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHH----------
Q ss_conf 6799996789875453001000101342123237887554431022211112103532205542400014----------
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN---------- 148 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaN---------- 148 (347)
++-|..+.-- .|..+ =+=+.||++-.... ...-.|++||++|..+..-.+
T Consensus 251 -------------f~~isApeiv-SGvSG--ESEkkiRelF~~A~----~~aPcivFiDeIDAI~pkRe~aqreMErRiV 310 (802)
T KOG0733 251 -------------FLSISAPEIV-SGVSG--ESEKKIRELFDQAK----SNAPCIVFIDEIDAITPKREEAQREMERRIV 310 (802)
T ss_pred -------------EEEECCHHHH-CCCCC--CCHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf -------------4851414653-15575--22899999999873----6697599851100136440457889999999
Q ss_pred -HHHHHHHHCCCC------CCEEEEECCCCCCCHHHHCEE---EEEECCCCCHHHHHHHHHHH--CCCC-CHHHHHHHHH
Q ss_conf -567776630343------416765044335730252036---98864799989999999972--7888-9678999999
Q gi|254780217|r 149 -ALLKSLEEPPQK------VLFILISHASPTILSTIRSRC---LSIKFNSLSENNLYKALEQL--KIMG-WDSKRDFVKI 215 (347)
Q Consensus 149 -ALLK~LEEPp~~------t~fiLit~~~~~il~TI~SRc---~~i~f~~l~~~~~~~~L~~~--~~~~-~~~~~~~~~~ 215 (347)
-||-.|-|+... ++.|=.|+.|+.|-|.+|-=- +.+-+.-+++..-.++|... +... .+-...-++.
T Consensus 311 aQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~ 390 (802)
T KOG0733 311 AQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAK 390 (802)
T ss_pred HHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99998510025666689976998247897655877732565532353068966889999999986277787768999975
Q ss_pred HCCCCHHHHHHHH
Q ss_conf 7598978999881
Q gi|254780217|r 216 AAYGSVARAIKIL 228 (347)
Q Consensus 216 ~s~Gs~~~A~~ll 228 (347)
++.|=+|.-+.-+
T Consensus 391 lTPGfVGADL~AL 403 (802)
T KOG0733 391 LTPGFVGADLMAL 403 (802)
T ss_pred CCCCCCCHHHHHH
T ss_conf 1887521419999
No 124
>KOG1968 consensus
Probab=98.31 E-value=6.9e-06 Score=67.05 Aligned_cols=201 Identities=18% Similarity=0.209 Sum_probs=125.6
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHCC--------------CCCE-EEEECCCCCCCHHHHHHHHHHHHHCC-CCCCC
Q ss_conf 65555875656109299999999999828--------------8981-66311798988899999999998177-99886
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSG--------------RMHH-ALLFEGEQGIGKATLGFRYAGHVLQN-PDFSK 66 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~~~--------------~l~h-a~Lf~Gp~GiGK~~~A~~~A~~llc~-~~~~~ 66 (347)
..||+|++-.++.|.......+.+....- ..-+ |.|.+||||+||++.|...|+.+.-. -+.+.
T Consensus 311 ~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Na 390 (871)
T KOG1968 311 TEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNA 390 (871)
T ss_pred CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEECCC
T ss_conf 31126530776633520366666588762213335400268615667788731788777205676630120654010475
Q ss_pred CCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH
Q ss_conf 43121012678867999967898754530010001013421232378875544310222111121035322055424000
Q gi|254780217|r 67 APVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 (347)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A 146 (347)
..|. + -+... ++-+....+=+|..=+ ..+-+-....+..-|+|+|++|-|...+
T Consensus 391 s~~R---S------k~~l~---------------~~~~~~~~s~si~~~~--~~~~~~~~~~~~~~vil~devD~~~~~d 444 (871)
T KOG1968 391 SDVR---S------KKELL---------------NKLGNATSSHSIKGSK--KKKGNRQSLNSDHFLILMDEVDGMFGED 444 (871)
T ss_pred CCCC---C------CCHHH---------------HHHHCCCCCCCHHHHH--CCCCCCCCCCCCEEEEEEECCCCCCCHH
T ss_conf 4334---4------22777---------------6640244664000111--1113300046660699974255442000
Q ss_pred ---HHHHHHHHHHCCCCCCEEEEECCCCCCCH-HHHCEEEEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCC
Q ss_conf ---14567776630343416765044335730-2520369886479998999999997----278889678999999759
Q gi|254780217|r 147 ---ANALLKSLEEPPQKVLFILISHASPTILS-TIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAY 218 (347)
Q Consensus 147 ---aNALLK~LEEPp~~t~fiLit~~~~~il~-TI~SRc~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~ 218 (347)
--++=.+.+ -.-.-++++|+..+.... ++-+=|..++|+.++.+.+...+.. ....+.+...+.+..++.
T Consensus 445 Rg~v~~l~~l~~--ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~ 522 (871)
T KOG1968 445 RGGVSKLSSLCK--KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSG 522 (871)
T ss_pred HHHHHHHHHHHH--HCCCCEEEEECCCCCCCCCCHHHHCCEEEECCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHCC
T ss_conf 136999999998--635776887337777665202232002340488577777666533024642417278899987506
Q ss_pred CCHHHHHHHHCCC
Q ss_conf 8978999881457
Q gi|254780217|r 219 GSVARAIKILHYD 231 (347)
Q Consensus 219 Gs~~~A~~ll~~~ 231 (347)
|+++..+..++..
T Consensus 523 ~DiR~~i~~lq~~ 535 (871)
T KOG1968 523 GDIRQIIMQLQFW 535 (871)
T ss_pred CCHHHHHHHHHHH
T ss_conf 4799999877644
No 125
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.8e-05 Score=63.69 Aligned_cols=183 Identities=16% Similarity=0.140 Sum_probs=113.7
Q ss_pred CCHHHHCCHHHHHHHHHHHHHCC------------CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 75656109299999999999828------------898166311798988899999999998177998864312101267
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCSG------------RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~~------------~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
.++++|=|-+.+++.+..++.-- .-|-+.|+|||||+|||.+|++.|....|..-.-.+ |
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg------S-- 219 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVG------S-- 219 (406)
T ss_pred CCHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECC------H--
T ss_conf 78653358899999999984033668889997499999712766899975889999987205866999421------9--
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-----------HH
Q ss_conf 8867999967898754530010001013421232378875544310222111121035322055424-----------00
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-----------RN 145 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-----------~~ 145 (347)
..-+-.-|.-+ -=||++-.-.. +..--|++||++|..- .+
T Consensus 220 ---ElVqKYiGEGa----------------------RlVRelF~lAr----ekaPsIIFiDEIDAIg~kR~d~~t~gDrE 270 (406)
T COG1222 220 ---ELVQKYIGEGA----------------------RLVRELFELAR----EKAPSIIFIDEIDAIGAKRFDSGTSGDRE 270 (406)
T ss_pred ---HHHHHHHCCCH----------------------HHHHHHHHHHH----HCCCEEEEEECHHHHHCCCCCCCCCCHHH
T ss_conf ---99999834116----------------------99999999874----14984999831122311113688885099
Q ss_pred HHHHHHHHHH-----HCCCCCCEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHHHH--CCC-CCHHHHHHHH
Q ss_conf 0145677766-----303434167650443357302520--36-98864799989999999972--788-8967899999
Q gi|254780217|r 146 AANALLKSLE-----EPPQKVLFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALEQL--KIM-GWDSKRDFVK 214 (347)
Q Consensus 146 AaNALLK~LE-----EPp~~t~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~~~--~~~-~~~~~~~~~~ 214 (347)
-|-.||-.|- +|-.|+.+|..||.++-|-|.++- |- +++.|+.|+.+.-.++|+-. ..+ ..+-..+.++
T Consensus 271 VQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la 350 (406)
T COG1222 271 VQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLA 350 (406)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 99999999986058897887689985588555576650887545301168989789999999876214676676999998
Q ss_pred HHCCCCHHHHHHHH
Q ss_conf 97598978999881
Q gi|254780217|r 215 IAAYGSVARAIKIL 228 (347)
Q Consensus 215 ~~s~Gs~~~A~~ll 228 (347)
..++|.-|.-++-+
T Consensus 351 ~~~~g~sGAdlkai 364 (406)
T COG1222 351 RLTEGFSGADLKAI 364 (406)
T ss_pred HHCCCCCHHHHHHH
T ss_conf 75389956779999
No 126
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.29 E-value=1.4e-06 Score=72.68 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=44.3
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 5875656109299999999999828898166311798988899999999998
Q gi|254780217|r 7 DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 7 ~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
-|.-.++++||+++++..+.+.++.| | .|+.||||+||+.+|++++..|
T Consensus 26 P~~lidqVIGQe~Av~~i~~Aa~qrr--h-vlliG~PGtGKSmlakam~elL 74 (637)
T PRK13765 26 PKLLIDQVIGQEHAVEVIKKAAKQRR--H-VMLIGSPGTGKSMLAKAMAELL 74 (637)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHC--C-EEEECCCCCCHHHHHHHHHHHC
T ss_conf 98523324571999999999998437--3-8986899987999999999757
No 127
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=98.24 E-value=1.7e-05 Score=63.96 Aligned_cols=159 Identities=20% Similarity=0.327 Sum_probs=108.6
Q ss_pred CCHHHHCCHHHHHHHHHHHHHC--------------C-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCC
Q ss_conf 7565610929999999999982--------------8-898166311798988899999999998177998864312101
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCS--------------G-RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN 73 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~--------------~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~ 73 (347)
+.++.+||=+++++.....|.. + ..=| .+|.|-||+||||.|+.+|+..-
T Consensus 3 ~EL~~~vGL~~vK~~i~EiYA~i~i~~kR~~~GLk~~~~~LH-MiFKGNPGTGKTTVAR~~gklf~-------------- 67 (261)
T TIGR02881 3 RELSRLVGLDEVKELIKEIYAWIQINEKRKEEGLKTSKQVLH-MIFKGNPGTGKTTVARLLGKLFK-------------- 67 (261)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-EEEECCCCCCHHHHHHHHHHHHH--------------
T ss_conf 235640488899999999999999988887510114884478-77427866843899999999985--------------
Q ss_pred CCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--------HH
Q ss_conf 2678867999967898754530010001013421232378875544310222111121035322055424--------00
Q gi|254780217|r 74 PDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN--------RN 145 (347)
Q Consensus 74 ~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln--------~~ 145 (347)
.|.-.+--.+++++|+- -=++..+. +-...|+++++ ..|| |.+||+|=.|. ++
T Consensus 68 ---------emnvL~KGH~iE~ERAD-LVGEYIGH--TAqkTRe~~kk-----A~GG--vLFiDEAYSLaRGGEKDFGKE 128 (261)
T TIGR02881 68 ---------EMNVLSKGHLIEVERAD-LVGEYIGH--TAQKTREVIKK-----ALGG--VLFIDEAYSLARGGEKDFGKE 128 (261)
T ss_pred ---------HCCCCCCCCEEEEEECC-CCCCCCCC--HHHHHHHHHHH-----HCCC--CHHHHHHHHHHCCCCCCCCCH
T ss_conf ---------33756788678876222-12232030--04899999998-----6388--005577777614888876620
Q ss_pred HHHHHHHHHHHCCCCCCEEEEE--C---CCCCCCHHHHCEE-EEEECCCCCHHHHHHHHHHH
Q ss_conf 0145677766303434167650--4---4335730252036-98864799989999999972
Q gi|254780217|r 146 AANALLKSLEEPPQKVLFILIS--H---ASPTILSTIRSRC-LSIKFNSLSENNLYKALEQL 201 (347)
Q Consensus 146 AaNALLK~LEEPp~~t~fiLit--~---~~~~il~TI~SRc-~~i~f~~l~~~~~~~~L~~~ 201 (347)
|=..|-|-+|+-..+-++||.= . +--.+=|=++||- ..+.|+--+.+++.++.+..
T Consensus 129 AIDtLVK~mEd~~~~lvlILAGY~~EM~yFL~~NPGL~SRFPi~i~FPdY~~eeL~~Ia~~m 190 (261)
T TIGR02881 129 AIDTLVKAMEDQRNELVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERM 190 (261)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHH
T ss_conf 88899998761569868997087689999862077977766505418899888999999999
No 128
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.21 E-value=0.00046 Score=52.36 Aligned_cols=183 Identities=14% Similarity=0.220 Sum_probs=110.9
Q ss_pred HHH-HCCHHHHHHHHH-HHH--HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHC
Q ss_conf 656-109299999999-999--8288981663117989888999999999981779988643121012678867999967
Q gi|254780217|r 11 NQR-LFGHEDIEKFLS-QYY--CSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS 86 (347)
Q Consensus 11 ~~~-i~G~~~~~~~L~-~~~--~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (347)
|+. |+|-.+....-. .++ ..|..-+-+.+||+.|+|||-+..+++..++......
T Consensus 118 FdnFVvG~sN~lA~aAA~~Va~~pg~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~--------------------- 176 (447)
T PRK00149 118 FDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNA--------------------- 176 (447)
T ss_pred CCCCEECCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC---------------------
T ss_conf 32622269859999999999837676778558977998878899999999999858997---------------------
Q ss_pred CCCCCEEEECCCCHHHCCCCCCCC---CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--HHHHHHHHHHHHHCC-CC
Q ss_conf 898754530010001013421232---378875544310222111121035322055424--000145677766303-43
Q gi|254780217|r 87 HALHDFLYLSYSLNPKTGKWRTVI---TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN--RNAANALLKSLEEPP-QK 160 (347)
Q Consensus 87 ~~hpd~~~i~~~~~~k~~~~~~~I---~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln--~~AaNALLK~LEEPp-~~ 160 (347)
.++++... +-....-..| ++++-|+ +. . ..-|.+|||++.+. ...|.-|.-|+..-- .+
T Consensus 177 ----~v~Y~tae--~F~~~~v~al~~~~~~~Fr~---~y--r----~~DvLliDDiqfl~gk~~tqeeff~~fn~l~~~~ 241 (447)
T PRK00149 177 ----KVVYVSSE--KFTNDFVKALRNNAMEEFKE---KY--R----SVDVLLIDDIQFLAGKEKTQEEFFHTFNALHENN 241 (447)
T ss_pred ----EEEEEEHH--HHHHHHHHHHHCCCHHHHHH---HH--H----CCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf ----28995499--99999999985186999999---99--7----2885432148886055779999999999999849
Q ss_pred CCEEEEECCCC----CCCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 41676504433----5730252036---9886479998999999997----27888967899999975989789998814
Q gi|254780217|r 161 VLFILISHASP----TILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 161 t~fiLit~~~~----~il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
--++++|..+- .+-+-++||. ..+.+.+|+.+.-.++|.+ .+..++++..++++....+++|...-.++
T Consensus 242 kqiv~tsd~~P~~l~~l~~rL~SRf~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~l~~~v~~~iA~~~~~nvR~LeGal~ 321 (447)
T PRK00149 242 KQIVITSDRPPKELEGLEDRLRSRFEWGLTVDIEPPDLETRVAILQKKAEEEGINLPNEVLEFIAKRIRSNIRELEGALN 321 (447)
T ss_pred CEEEEECCCCHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 96899578896765651177886763762651059999999999999999728999989999999712688999999999
No 129
>pfam06144 DNA_pol3_delta DNA polymerase III, delta subunit. DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction. The delta subunit is also known as HolA.
Probab=98.17 E-value=2.8e-05 Score=62.18 Aligned_cols=154 Identities=12% Similarity=0.127 Sum_probs=109.4
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHH
Q ss_conf 63117989888999999999981779988643121012678867999967898754530010001013421232378875
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR 116 (347)
|+|||+.-.=.......+.+.+..... ..-++..++ +....+++
T Consensus 1 Yll~G~e~~l~~~~~~~i~~~~~~~~~------------------------~~~n~~~~d----------~~~~~~~~-- 44 (172)
T pfam06144 1 YLLYGEDPFLLEETKDQILKAALDQGF------------------------EDFNYIYFD----------LEEDWADD-- 44 (172)
T ss_pred CEEECCCHHHHHHHHHHHHHHHHCCCC------------------------CEEEEEEEC----------CCCCCHHH--
T ss_conf 979728599999999999999737997------------------------303689862----------77666999--
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHH----CCHHHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHHCEEEEEECCC
Q ss_conf 5443102221111210353220554----2400014567776630343416765044----3357302520369886479
Q gi|254780217|r 117 RIRYFLSLTANTGYWRVIMIDPVDG----MNRNAANALLKSLEEPPQKVLFILISHA----SPTILSTIRSRCLSIKFNS 188 (347)
Q Consensus 117 ~l~~~~~~~~~~~~~Ki~IId~ad~----ln~~AaNALLK~LEEPp~~t~fiLit~~----~~~il~TI~SRc~~i~f~~ 188 (347)
+...+...|..|++|+++|.++.. ...+....|.+.++.||+++++|+.++. ..++...+.+-+..+.|.+
T Consensus 45 -i~~~~~t~slF~~~rlvii~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lv~~~~~~~~~~~k~~k~l~k~~~~i~~~~ 123 (172)
T pfam06144 45 -VLEECETLPFFSDKRIVILNNPNLKESKLNEKLLKRLEEYLSNPPEDTLLIIEAPGKLDERKKLTKLLKKKATVVECFT 123 (172)
T ss_pred -HHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCEEEEECC
T ss_conf -9999728998889769999776424455539999999999836998728999836741367888999983766999348
Q ss_pred CCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 998999999997----278889678999999759897899988
Q gi|254780217|r 189 LSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKI 227 (347)
Q Consensus 189 l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~l 227 (347)
++..++..|+.+ .+..++.++.+.++....|+...+.+-
T Consensus 124 ~~~~~l~~wi~~~~~~~g~~i~~~a~~~L~~~~g~nl~~l~~E 166 (172)
T pfam06144 124 LKEEELIQWIQKRAKELGLKIEKDALQLLAEKVENNLLAIAQE 166 (172)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHH
T ss_conf 9878999999999998499989999999999978489999999
No 130
>KOG1942 consensus
Probab=98.16 E-value=0.00026 Score=54.40 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=75.4
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEC-------------CCCCCCHHHHCEEEEEECCCCCHHHHHHHH
Q ss_conf 0353220554240001456777663034341676504-------------433573025203698864799989999999
Q gi|254780217|r 132 RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH-------------ASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 (347)
Q Consensus 132 Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~-------------~~~~il~TI~SRc~~i~f~~l~~~~~~~~L 198 (347)
-|.+||++|.+..+...-|-|.||-|-.-++++ .|| .|+.|++-+.-|...++-.+-+++++++++
T Consensus 298 GVLFIDEVhMLDiEcFTyL~kalES~iaPivif-AsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii 376 (456)
T KOG1942 298 GVLFIDEVHMLDIECFTYLHKALESPIAPIVIF-ASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQII 376 (456)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEE-ECCCCCEEECCCCCCCCCCCCCHHHHHHEEEEEECCCCHHHHHHHH
T ss_conf 626863013242699999999862778756999-6277610221776787878899778612667860369989999999
Q ss_pred HH----HCCCCCHHHHHHHHHHCCC-CHHHHHHHHC
Q ss_conf 97----2788896789999997598-9789998814
Q gi|254780217|r 199 EQ----LKIMGWDSKRDFVKIAAYG-SVARAIKILH 229 (347)
Q Consensus 199 ~~----~~~~~~~~~~~~~~~~s~G-s~~~A~~ll~ 229 (347)
.. ++....+++.+.+...+.. |.+-+++++.
T Consensus 377 ~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~ 412 (456)
T KOG1942 377 KIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLT 412 (456)
T ss_pred HHHHHHHCCEECHHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 998765142322889999876054145788988537
No 131
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=98.16 E-value=3.2e-06 Score=69.74 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=69.8
Q ss_pred HHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHH--CCC
Q ss_conf 656109299999999999828898166311798988899999999998177998864312101267886799996--789
Q gi|254780217|r 11 NQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA--SHA 88 (347)
Q Consensus 11 ~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~--~~~ 88 (347)
|++|+||+.+++.|.-+... . |.+|++||||+||+++|++++. ||- ..+.....+ ...+. +|.
T Consensus 2 f~di~GQ~~akrAl~iAaaG-~--H~lLl~GpPG~GKTmlA~rl~~-iLP--~l~~~e~le---------~~~i~S~~g~ 66 (207)
T pfam01078 2 LADVKGQEQAKRALEIAAAG-G--HNLLMIGPPGSGKTMLAKRLPG-ILP--PLTEQEALE---------VTAIHSVAGL 66 (207)
T ss_pred HHHHCCCHHHHHHHHHHHCC-C--CCEEEECCCCCCHHHHHHHHHC-CCC--CCCHHHHHH---------HHHHHCCCCC
T ss_conf 76863859999999998547-8--7589788998029999976301-489--987899887---------7764230368
Q ss_pred CCCEEEEC-CCCHHHCCCCCCCCCHHHHHHHHH-HCCCCCC---CCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 87545300-100010134212323788755443-1022211---11210353220554240001456777663
Q gi|254780217|r 89 LHDFLYLS-YSLNPKTGKWRTVITVDEIRRIRY-FLSLTAN---TGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 89 hpd~~~i~-~~~~~k~~~~~~~I~vd~IR~l~~-~~~~~~~---~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
.++--.+. +++.. ....++... ++. -..-+|. ....=|.++||+-.++....++|+.-||+
T Consensus 67 ~~~~~l~~~rPfr~----PHhs~s~~a---liGGg~~~~PGeIslAH~GVLFLDE~~Ef~~~vle~LrqpLE~ 132 (207)
T pfam01078 67 GGDGGLIRRRPFRA----PHHSASAAA---LVGGGSIPRPGEISLAHNGVLFLDELPEFSRRVLESLRQPLED 132 (207)
T ss_pred CCCCCCCCCCCCCC----CCCCCCHHH---CCCCCCCCCCCCEEECCCCEEEECCHHHCCHHHHHHHHHHHCC
T ss_conf 77777445798657----887643633---2268888999706663687888476465398899999876604
No 132
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.13 E-value=4.8e-06 Score=68.31 Aligned_cols=90 Identities=28% Similarity=0.389 Sum_probs=49.4
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCC-CEEEECCCCHHHCCCCCCCCCHHHH
Q ss_conf 631179898889999999999817799886431210126788679999678987-5453001000101342123237887
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH-DFLYLSYSLNPKTGKWRTVITVDEI 115 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hp-d~~~i~~~~~~k~~~~~~~I~vd~I 115 (347)
+|++||+|+||+++|+.+|+.+ +.. ++.... ...+..+ |++- ........... ++
T Consensus 2 vll~Gp~G~GKT~la~~la~~l-~~~-----~~~~i~----------~~~~~~~~dl~G-~~~~~~~~~~~-----~~-- 57 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAAL-SNR-----PVFYVQ----------LTRDTTEEDLKG-RRNIANGTTSW-----VD-- 57 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHC-CCC-----CCHHHC----------CCCCCCHHHCCC-CEECCCCCEEE-----EC--
T ss_conf 8999899756999999999980-798-----311121----------465565222057-34237993578-----15--
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 55443102221111210353220554240001456777663
Q gi|254780217|r 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 116 R~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
.-+.. ... .-.|+++||+++++.+.+++|+..||+
T Consensus 58 ----g~l~~-a~~-~g~vl~lDEin~a~~~v~~~L~~~le~ 92 (139)
T pfam07728 58 ----GPLVR-AAR-EGEIAVLDEINRANPDVLNSLLSLLDE 92 (139)
T ss_pred ----CHHHC-CCC-CCCEEEECCHHHCCHHHHHHHHHHHCC
T ss_conf ----51410-101-286899634344899999999999748
No 133
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.06 E-value=1.7e-05 Score=63.86 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=69.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
++.++++||+|+||++++..+|+.+.... ..+-....+ ........... .... . ........+.
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~----~~v~~~~~~---~~~~~~~~~~~--~~~~-----~--~~~~~~~~~~ 65 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGE---DILEEVLDQLL--LIIV-----G--GKKASGSGEL 65 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCC----CCEEEEEHH---HHHHHHHHHHH--HHHH-----C--CCCCCCCHHH
T ss_conf 97899999997029999999998726689----968998759---98988898765--3000-----1--1221051999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHH--------HHHHCCCCCCEEEEECC---CCCCCHHHHCEEE
Q ss_conf 875544310222111121035322055424000145677--------76630343416765044---3357302520369
Q gi|254780217|r 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLK--------SLEEPPQKVLFILISHA---SPTILSTIRSRCL 182 (347)
Q Consensus 114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK--------~LEEPp~~t~fiLit~~---~~~il~TI~SRc~ 182 (347)
.++.+...+...+ ..|++||+++.+.......++. ..+.+..+..+|++++. +..-+...+++++
T Consensus 66 ~~~~~~~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~~~~~~~~~~~~~~~~~ 141 (148)
T smart00382 66 RLRLALALARKLK----PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRR 141 (148)
T ss_pred HHHHHHHHHHHCC----CCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCEE
T ss_conf 9999999998449----989998275021476207999999999985176578998999956995224987707447879
Q ss_pred EE
Q ss_conf 88
Q gi|254780217|r 183 SI 184 (347)
Q Consensus 183 ~i 184 (347)
..
T Consensus 142 ~~ 143 (148)
T smart00382 142 IV 143 (148)
T ss_pred EE
T ss_conf 99
No 134
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.04 E-value=0.00033 Score=53.48 Aligned_cols=131 Identities=19% Similarity=0.246 Sum_probs=87.2
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHH---HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 55558756561092999999999---998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 4 RAFDPVYNQRLFGHEDIEKFLSQ---YYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 4 ~~~~p~~~~~i~G~~~~~~~L~~---~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
..|.|-...+++|-+.+.+.|.. .+..|.-.+-.|++|-+|.||.++..++-...-
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~--------------------- 110 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYA--------------------- 110 (287)
T ss_pred CCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHH---------------------
T ss_conf 98997678987273189999999899997288652367763777774799999999987---------------------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHH---HHHHHCCCCCCCCCCHHHHHHHHHHCCH---HHHHHHHHH-
Q ss_conf 999967898754530010001013421232378875---5443102221111210353220554240---001456777-
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR---RIRYFLSLTANTGYWRVIMIDPVDGMNR---NAANALLKS- 153 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR---~l~~~~~~~~~~~~~Ki~IId~ad~ln~---~AaNALLK~- 153 (347)
+.-+++++|+ .+|+- .|.+.+... +.|++|+ ||+++- +.+=..||.
T Consensus 111 ------~~glrLVEV~---------------k~dl~~Lp~l~~~Lr~~----~~kFIlF--cDDLSFe~gd~~yK~LKs~ 163 (287)
T COG2607 111 ------DEGLRLVEVD---------------KEDLATLPDLVELLRAR----PEKFILF--CDDLSFEEGDDAYKALKSA 163 (287)
T ss_pred ------HCCCEEEEEC---------------HHHHHHHHHHHHHHHCC----CCEEEEE--ECCCCCCCCCHHHHHHHHH
T ss_conf ------4177079976---------------88886579999999618----8608999--5677777781389999998
Q ss_pred ----HHHCCCCCCEEEEECCCCCCCHHHHCEEE
Q ss_conf ----66303434167650443357302520369
Q gi|254780217|r 154 ----LEEPPQKVLFILISHASPTILSTIRSRCL 182 (347)
Q Consensus 154 ----LEEPp~~t~fiLit~~~~~il~TI~SRc~ 182 (347)
+|.+|.|++|-=++|..+-++.+..-|-+
T Consensus 164 LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~ 196 (287)
T COG2607 164 LEGGVEGRPANVLFYATSNRRHLLPEDMKDNEG 196 (287)
T ss_pred HCCCCCCCCCEEEEEEECCCCCCCCHHHHHCCC
T ss_conf 538855688707999715875336276642778
No 135
>KOG0733 consensus
Probab=98.00 E-value=7.8e-05 Score=58.57 Aligned_cols=168 Identities=20% Similarity=0.173 Sum_probs=103.2
Q ss_pred CCHHHHCCHHHHHHHHHHHHHC------------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 7565610929999999999982------------8898166311798988899999999998177998864312101267
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCS------------GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~------------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
.+|++|=|++++..+|.-++.. -+.|.++|++||||+|||.+|.+.|..-
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa------------------ 569 (802)
T KOG0733 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA------------------ 569 (802)
T ss_pred CCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC------------------
T ss_conf 87664124999999999998600238889998288898723875799861889999985030------------------
Q ss_pred CCHHHHHHHCCCCCCEEEECCC-CHHHCCCCCCCCCHHH----HHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-------
Q ss_conf 8867999967898754530010-0010134212323788----755443102221111210353220554240-------
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYS-LNPKTGKWRTVITVDE----IRRIRYFLSLTANTGYWRVIMIDPVDGMNR------- 144 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~-~~~k~~~~~~~I~vd~----IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~------- 144 (347)
--+++.|.-+ ...| .|-+ ||.+- .++-.+.-.|+++|++|.|..
T Consensus 570 ------------g~NFisVKGPELlNk--------YVGESErAVR~vF----qRAR~saPCVIFFDEiDaL~p~R~~~~s 625 (802)
T KOG0733 570 ------------GANFISVKGPELLNK--------YVGESERAVRQVF----QRARASAPCVIFFDEIDALVPRRSDEGS 625 (802)
T ss_pred ------------CCCEEEECCHHHHHH--------HHHHHHHHHHHHH----HHHHCCCCEEEEECCHHHCCCCCCCCCC
T ss_conf ------------475476238899987--------7423789999999----9862389838985111202765577775
Q ss_pred ----HHHHHHHHHHH--HCCCCCCEEEEECCCCCCCHHHHC--EEE-EEECCCCCHHHHHHHHHHHC-----CCCCHHHH
Q ss_conf ----00145677766--303434167650443357302520--369-88647999899999999727-----88896789
Q gi|254780217|r 145 ----NAANALLKSLE--EPPQKVLFILISHASPTILSTIRS--RCL-SIKFNSLSENNLYKALEQLK-----IMGWDSKR 210 (347)
Q Consensus 145 ----~AaNALLK~LE--EPp~~t~fiLit~~~~~il~TI~S--Rc~-~i~f~~l~~~~~~~~L~~~~-----~~~~~~~~ 210 (347)
---|-||--|- |--.+++.|=.||.|+.|-|.|+- |-- .+.+..++.++-..+|+..- +-.++-.+
T Consensus 626 ~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl 705 (802)
T KOG0733 626 SVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDL 705 (802)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 05899999999873162111425999506897655565518775574245069987889999999853579988754589
Q ss_pred HHHHHHCC
Q ss_conf 99999759
Q gi|254780217|r 211 DFVKIAAY 218 (347)
Q Consensus 211 ~~~~~~s~ 218 (347)
+.++....
T Consensus 706 ~eia~~~~ 713 (802)
T KOG0733 706 DEIARNTK 713 (802)
T ss_pred HHHHHCCC
T ss_conf 99851232
No 136
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00028 Score=54.09 Aligned_cols=194 Identities=13% Similarity=0.083 Sum_probs=121.0
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCC
Q ss_conf 56561092999999999998288981663117989888999999999981779988643121012678867999967898
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~h 89 (347)
..+.++|-++.++.....+...+=.+ =++.|+||+|||..+.-+|+.+.....+..- ...
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNN-PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L--~~~----------------- 227 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNN-PVLVGEPGVGKTAIVEGLAQRIVNGDVPESL--KDK----------------- 227 (786)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCC-CEEECCCCCCHHHHHHHHHHHHHCCCCCHHH--CCC-----------------
T ss_conf 98877374799999999983568899-8476689888999998999997469999787--588-----------------
Q ss_pred CCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC---------HHHHHHHHHHHHHCCCC
Q ss_conf 754530010001013421232378875544310222111121035322055424---------00014567776630343
Q gi|254780217|r 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN---------RNAANALLKSLEEPPQK 160 (347)
Q Consensus 90 pd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln---------~~AaNALLK~LEEPp~~ 160 (347)
.++-++...--.+-+.+.. -=+-++.+.+.+..++ .-|.+||++|.+- ..|+|.|.-.|- ..
T Consensus 228 -~i~sLD~g~LvAGakyRGe-FEeRlk~vl~ev~~~~----~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLA---RG 298 (786)
T COG0542 228 -RIYSLDLGSLVAGAKYRGE-FEERLKAVLKEVEKSK----NVILFIDEIHTIVGAGATEGGAMDAANLLKPALA---RG 298 (786)
T ss_pred -EEEEECHHHHHCCCCCCCC-HHHHHHHHHHHHHCCC----CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHH---CC
T ss_conf -7997148767464653573-8999999999985179----8499982355405777666665125664677874---58
Q ss_pred CCEEEE-EC-CCCC-C---CHHHHCEEEEEECCCCCHHHHHHHHHH--------HCCCCCHHHHHHHHHHCCC------C
Q ss_conf 416765-04-4335-7---302520369886479998999999997--------2788896789999997598------9
Q gi|254780217|r 161 VLFILI-SH-ASPT-I---LSTIRSRCLSIKFNSLSENNLYKALEQ--------LKIMGWDSKRDFVKIAAYG------S 220 (347)
Q Consensus 161 t~fiLi-t~-~~~~-i---l~TI~SRc~~i~f~~l~~~~~~~~L~~--------~~~~~~~~~~~~~~~~s~G------s 220 (347)
.+=+.- |+ +-++ . -+.+--|-|.+.+..|+.++...+|.- .+..+.++++..++.+|.- =
T Consensus 299 eL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~L 378 (786)
T COG0542 299 ELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFL 378 (786)
T ss_pred CEEEEEECCHHHHHHHHHHCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHCCCCCC
T ss_conf 73799735589998873306677846751027998989999999877888877069643379999999999864556789
Q ss_pred HHHHHHHHCCCH
Q ss_conf 789998814577
Q gi|254780217|r 221 VARAIKILHYDC 232 (347)
Q Consensus 221 ~~~A~~ll~~~~ 232 (347)
|.+|+.+++...
T Consensus 379 PDKAIDLiDeA~ 390 (786)
T COG0542 379 PDKAIDLLDEAG 390 (786)
T ss_pred CCHHHHHHHHHH
T ss_conf 946777889999
No 137
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=97.95 E-value=5.6e-06 Score=67.78 Aligned_cols=186 Identities=17% Similarity=0.195 Sum_probs=116.2
Q ss_pred CCHHHHCCHHHHHHHHHHHHHC-----------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC
Q ss_conf 7565610929999999999982-----------88981663117989888999999999981779988643121012678
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCS-----------GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~-----------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~ 77 (347)
-.|.||-|.+++++.|.....= +|+|-+.|++||||+|||.+|++.|- ..+.|.-.-
T Consensus 56 v~F~DVAG~dEAKeEl~EiVdFLK~P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvAG-------EA~VPFF~i----- 123 (505)
T TIGR01241 56 VTFKDVAGIDEAKEELVEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG-------EAGVPFFSI----- 123 (505)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHC-------CCCCCCEEE-----
T ss_conf 32234445323334333134222696379872788987147317878424678875202-------588962474-----
Q ss_pred CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC---------------
Q ss_conf 86799996789875453001000101342123237887554431022211112103532205542---------------
Q gi|254780217|r 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM--------------- 142 (347)
Q Consensus 78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~l--------------- 142 (347)
+|| |+.+.-.- ++--=||+|=+..- .+.=.||.|||+|..
T Consensus 124 --------SGS--dFVEMFVG-----------VGASRVRDLFeqAK----~nAPCIIFIDEIDAVGr~RGaG~lGGGnDE 178 (505)
T TIGR01241 124 --------SGS--DFVEMFVG-----------VGASRVRDLFEQAK----KNAPCIIFIDEIDAVGRQRGAGELGGGNDE 178 (505)
T ss_pred --------CCC--CEEECCCC-----------CCCEEHHHHHHHHH----HHCCCEEEEECHHHCCCCCCCCCCCCCCCH
T ss_conf --------076--10111205-----------64000144579999----718970564010000333564366765413
Q ss_pred CHHHHHHHHHHHH--HCCCCCCEEEEECCCCCCCHHHHCEE----EEEECCCCCHHHHHHHHHHH---CCCCCHHHHHHH
Q ss_conf 4000145677766--30343416765044335730252036----98864799989999999972---788896789999
Q gi|254780217|r 143 NRNAANALLKSLE--EPPQKVLFILISHASPTILSTIRSRC----LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFV 213 (347)
Q Consensus 143 n~~AaNALLK~LE--EPp~~t~fiLit~~~~~il~TI~SRc----~~i~f~~l~~~~~~~~L~~~---~~~~~~~~~~~~ 213 (347)
.+|.-|=||==|= +...+ ++++.++|--.||..=+=|= +++.+..|+-.-=.++|+=. ..-.++-.+..+
T Consensus 179 REQTLNQLLVEMDGF~~~~g-vIv~AATNRPDvLD~ALLRPGRFDRQv~V~~PD~~GR~~IL~VH~~~~kLa~~vdL~~~ 257 (505)
T TIGR01241 179 REQTLNQLLVEMDGFGTNTG-VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAV 257 (505)
T ss_pred HHHHHHHHHEECCCCCCCCC-EEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 55433233133178589885-79985048841165100687874451345888746789999998548899702477999
Q ss_pred HHHCCCCHHH-HHHHHCCCH
Q ss_conf 9975989789-998814577
Q gi|254780217|r 214 KIAAYGSVAR-AIKILHYDC 232 (347)
Q Consensus 214 ~~~s~Gs~~~-A~~ll~~~~ 232 (347)
++.+.|--|- .-|++|..+
T Consensus 258 Ar~TPGfSGADLaNl~NEAA 277 (505)
T TIGR01241 258 ARRTPGFSGADLANLLNEAA 277 (505)
T ss_pred HHHCCCCCHHHHHHHHHHHH
T ss_conf 70156876788999999999
No 138
>KOG0731 consensus
Probab=97.95 E-value=0.00038 Score=53.03 Aligned_cols=188 Identities=15% Similarity=0.136 Sum_probs=95.8
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHH----------C-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC
Q ss_conf 58756561092999999999998----------2-889816631179898889999999999817799886431210126
Q gi|254780217|r 7 DPVYNQRLFGHEDIEKFLSQYYC----------S-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 (347)
Q Consensus 7 ~p~~~~~i~G~~~~~~~L~~~~~----------~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~ 75 (347)
.+-.|.||.|.+++++.|..... . -++|++.|++||||+|||.+|.+.|.. .+.|.-.|+..
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE-------AgVPF~svSGS 378 (774)
T KOG0731 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE-------AGVPFFSVSGS 378 (774)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCC-------CCCCEEEECHH
T ss_conf 88760102670899999999999843989998747767675178789998678999988530-------58964641337
Q ss_pred -C----------CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH
Q ss_conf -7----------88679999678987545300100010134212323788755443102221111210353220554240
Q gi|254780217|r 76 -P----------CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR 144 (347)
Q Consensus 76 -~----------~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~ 144 (347)
. .-...-..+...-|-+ |-||+|-.+...-. |+ ....-+-| ..
T Consensus 379 EFvE~~~g~~asrvr~lf~~ar~~aP~i-----------------ifideida~~~~r~-----G~--~~~~~~~e--~e 432 (774)
T KOG0731 379 EFVEMFVGVGASRVRDLFPLARKNAPSI-----------------IFIDEIDAVGRKRG-----GK--GTGGGQDE--RE 432 (774)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCEE-----------------EEECCCCCCCCCCC-----CC--CCCCCCHH--HH
T ss_conf 8888760343488899998743269807-----------------97145420031255-----66--66788807--88
Q ss_pred HHHHHHHHHHH--HCCCCCCEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHHHH----CCCCCHHHHHHHHH
Q ss_conf 00145677766--303434167650443357302520--36-98864799989999999972----78889678999999
Q gi|254780217|r 145 NAANALLKSLE--EPPQKVLFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKI 215 (347)
Q Consensus 145 ~AaNALLK~LE--EPp~~t~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~~~----~~~~~~~~~~~~~~ 215 (347)
+.-|.||--|- +...+++++=.|+.++-+-+.++- |- +.+.+..++...-.+++.-. ....++....-++.
T Consensus 433 ~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~ 512 (774)
T KOG0731 433 QTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLAS 512 (774)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 89998878752776778479981168866428876498755552324698514168999998621577631567999986
Q ss_pred HCCCCHHHHHHH
Q ss_conf 759897899988
Q gi|254780217|r 216 AAYGSVARAIKI 227 (347)
Q Consensus 216 ~s~Gs~~~A~~l 227 (347)
...|-.|.-+..
T Consensus 513 ~t~gf~gadl~n 524 (774)
T KOG0731 513 LTPGFSGADLAN 524 (774)
T ss_pred CCCCCCHHHHHH
T ss_conf 089996789986
No 139
>KOG0744 consensus
Probab=97.94 E-value=0.00019 Score=55.50 Aligned_cols=142 Identities=18% Similarity=0.221 Sum_probs=79.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHH
Q ss_conf 66311798988899999999998177998864312101267886799996789875453001000101342123237887
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~I 115 (347)
-+|+|||||+||+++-.++|+.|=-.-...... +..++-++|.=+ ..|-...||.- .+--++|
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~------------~~liEinshsLF----SKWFsESgKlV-~kmF~kI 241 (423)
T KOG0744 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYK------------GQLIEINSHSLF----SKWFSESGKLV-AKMFQKI 241 (423)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHEEEECCCCCC------------CEEEEEEHHHHH----HHHHHHHHHHH-HHHHHHH
T ss_conf 899857999882279999987514652376444------------069997046788----98871211389-9999999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHCCH---------------HHHHHHHHHHHHCC-CCCCEEEEECCCC-CCCHHHH
Q ss_conf 55443102221111210353220554240---------------00145677766303-4341676504433-5730252
Q gi|254780217|r 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNR---------------NAANALLKSLEEPP-QKVLFILISHASP-TILSTIR 178 (347)
Q Consensus 116 R~l~~~~~~~~~~~~~Ki~IId~ad~ln~---------------~AaNALLK~LEEPp-~~t~fiLit~~~~-~il~TI~ 178 (347)
.++.+. .|..=.++||++|.+.. -+-||+|--|.--- -..+.||+|+|.. .|-....
T Consensus 242 ~ELv~d------~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfV 315 (423)
T KOG0744 242 QELVED------RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFV 315 (423)
T ss_pred HHHHHC------CCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 999717------89689998078788899987541379982189999999998998604797799962626777788861
Q ss_pred CEEE-EEECCCCCHHHHHHHHHH
Q ss_conf 0369-886479998999999997
Q gi|254780217|r 179 SRCL-SIKFNSLSENNLYKALEQ 200 (347)
Q Consensus 179 SRc~-~i~f~~l~~~~~~~~L~~ 200 (347)
-|.- .+++-||+-..+.++++.
T Consensus 316 DRADi~~yVG~Pt~~ai~~Ilks 338 (423)
T KOG0744 316 DRADIVFYVGPPTAEAIYEILKS 338 (423)
T ss_pred HHHHHEEECCCCCHHHHHHHHHH
T ss_conf 17542110389639999999999
No 140
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=0.0021 Score=47.10 Aligned_cols=157 Identities=20% Similarity=0.275 Sum_probs=98.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHH
Q ss_conf 16631179898889999999999817799886431210126788679999678987545300100010134212323788
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~ 114 (347)
+-+.+||+.|.|||-+..+++..+.. + +..++++.... -.. --|+-
T Consensus 142 NPLfIyG~~GlGKTHLL~AIgn~i~~-~--------------------------~~kV~Yvtae~--F~~-----~~v~a 187 (455)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVSALRE-S--------------------------GGKILYVSSEL--FTE-----HLVSA 187 (455)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHC-C--------------------------CCEEEEECHHH--HHH-----HHHHH
T ss_conf 87588789999789999999998537-9--------------------------98699974999--999-----99999
Q ss_pred HHH--HHHHCCCCCCCCCCHHHHHHHHHHCC--HHHHHHHHHHHHHCC-CCCCEEEEECCCCC----CCHHHHCEE---E
Q ss_conf 755--44310222111121035322055424--000145677766303-43416765044335----730252036---9
Q gi|254780217|r 115 IRR--IRYFLSLTANTGYWRVIMIDPVDGMN--RNAANALLKSLEEPP-QKVLFILISHASPT----ILSTIRSRC---L 182 (347)
Q Consensus 115 IR~--l~~~~~~~~~~~~~Ki~IId~ad~ln--~~AaNALLK~LEEPp-~~t~fiLit~~~~~----il~TI~SRc---~ 182 (347)
+|. +..|-.. +. ..=|.+|||++.+. ...|.-|.-|+..-- .+--++|+|..+-+ +-+-++||. .
T Consensus 188 i~~~~~~~Fr~~--yr-~~DvLLIDDIQfl~gK~~tqeEff~tfN~L~~~~KQIVitsDr~P~el~~l~~RL~SRf~~GL 264 (455)
T PRK12422 188 IRSGEMQRFRSF--YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSSYAPGDLKAMEERLISRFEWGI 264 (455)
T ss_pred HHCCCHHHHHHH--HH-CCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCE
T ss_conf 975889999999--96-388776314788728488999999999999985996999689895765126899998863761
Q ss_pred EEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 886479998999999997----2788896789999997598978999881
Q gi|254780217|r 183 SIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKIL 228 (347)
Q Consensus 183 ~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll 228 (347)
.+.+.||+.+...++|.. .+...+++.+++++..-.+++|...-.+
T Consensus 265 ~v~I~~Pd~etr~~Il~~k~~~~~~~l~~ev~~~iA~~i~~niReLeGal 314 (455)
T PRK12422 265 AIPIHPLTREGLRSFLMRQAEQLSIRIEETALDFLIQALSSNVKTLLHAL 314 (455)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32168999899999999999871888844689999999755179999999
No 141
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=97.93 E-value=1.8e-05 Score=63.62 Aligned_cols=88 Identities=20% Similarity=0.236 Sum_probs=49.8
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHH
Q ss_conf 66311798988899999999998177998864312101267886799996789875453001000101342123237887
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~I 115 (347)
-+|++||||+||+++|+++|+.+-..-. --.|+++. .--|++-.. ..+.+.+..
T Consensus 1 hVLL~GppG~GKT~l~~~lA~~~~~~~~-----~i~~~~~~-----------~~~Dl~G~~-~~~~~~~~~--------- 54 (131)
T pfam07726 1 HVLLEGVPGLAKTLLARTLARSLGLDFR-----RIQFTPDL-----------LPSDITGTE-VYDQKTREF--------- 54 (131)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCE-----EEEECCCC-----------CCCCCCCCE-EECCCCCEE---------
T ss_conf 9878989987699999999999599816-----88833776-----------700036845-423787408---------
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 55443102221111210353220554240001456777663
Q gi|254780217|r 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 116 R~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
.+...|..+ .|+++||+.+++.+.+|+||-.|+|
T Consensus 55 -----~~~~G~l~~--~vl~lDEin~a~~~v~~~Ll~~l~e 88 (131)
T pfam07726 55 -----EFRPGPIFA--NVLLADEINRAPPKTQSALLEAMQE 88 (131)
T ss_pred -----EEECCCCCC--CCEEEEHHHCCCHHHHHHHHHHHHC
T ss_conf -----984573103--7056401203998999999976326
No 142
>PRK06620 hypothetical protein; Validated
Probab=97.91 E-value=0.00016 Score=56.09 Aligned_cols=158 Identities=17% Similarity=0.243 Sum_probs=93.5
Q ss_pred CCHHH--HHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCC
Q ss_conf 09299--99999999982---88981663117989888999999999981779988643121012678867999967898
Q gi|254780217|r 15 FGHED--IEKFLSQYYCS---GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 (347)
Q Consensus 15 ~G~~~--~~~~L~~~~~~---~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~h 89 (347)
+|..+ +.+.+.+.-.. +.....++++||+|+||+.++..++..=-+
T Consensus 20 vs~~N~~A~~~i~~wp~~~~~~~~~~~l~I~Gp~gSGKTHL~~i~~~~~~a----------------------------- 70 (214)
T PRK06620 20 VSSSNDQAYNIIKNWQCMFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA----------------------------- 70 (214)
T ss_pred ECCCHHHHHHHHHHCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----------------------------
T ss_conf 768699999999836302566865555999879999889999999998285-----------------------------
Q ss_pred CCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 75453001000101342123237887554431022211112103532205542400014567776630343416765044
Q gi|254780217|r 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 (347)
Q Consensus 90 pd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~ 169 (347)
..+..... .+++ .....++|||++|..+.++.-.+.-.+-| .+..++++++.
T Consensus 71 ---~~~~~~~~-----------~~~~------------~~~~~~~iiddid~~~e~~lfhlfN~~~~--~~~~llits~~ 122 (214)
T PRK06620 71 ---YIIKDIFF-----------NEEI------------LEKYNAFIIEDIENWQEPALLHIFNIINE--KQKYLLLTSSD 122 (214)
T ss_pred ---EEECHHHC-----------CHHH------------HHHCCCEEEECCCCCCHHHHHHHHHHHHH--CCCEEEEEECC
T ss_conf ---88151214-----------5878------------84379379846775746799999999971--59879998279
Q ss_pred CC-C-CCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 33-5-730252036---9886479998999999997----27888967899999975989789998814
Q gi|254780217|r 170 SP-T-ILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 170 ~~-~-il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
+. . .+|=++||- ..+.+.+|+.+.+...+.+ .+...+++..+++....+-+...+..+++
T Consensus 123 ~p~~~~L~DL~SRl~~~~~~~i~~PdD~l~~~ll~k~~~~r~i~i~~~vi~yl~~ri~Rs~~~l~~~v~ 191 (214)
T PRK06620 123 KSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILE 191 (214)
T ss_pred CCCCCCCCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 852245357899985464433269898999999999999869988755999999985178999999999
No 143
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00043 Score=52.62 Aligned_cols=184 Identities=18% Similarity=0.201 Sum_probs=103.8
Q ss_pred CCHHHHCCHHHHHHHHHHHHH-----------CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC
Q ss_conf 756561092999999999998-----------288981663117989888999999999981779988643121012678
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYC-----------SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~-----------~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~ 77 (347)
..|.++.|.+++++.|..... .+++|..+|+.||||+||+.+|++.|.. .+.|.-.-
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE-------A~VPFf~i----- 214 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE-------AGVPFFSI----- 214 (596)
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCC-------CCCCCEEC-----
T ss_conf 675664186799999999999863855667523534565268559998727899998454-------68983530-----
Q ss_pred CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-------------
Q ss_conf 8679999678987545300100010134212323788755443102221111210353220554240-------------
Q gi|254780217|r 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR------------- 144 (347)
Q Consensus 78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~------------- 144 (347)
|-+|+.++-.. .+..-||++-...... .-.|+.||++|....
T Consensus 215 ----------SGS~FVemfVG-----------vGAsRVRdLF~qAkk~----aP~IIFIDEiDAvGr~Rg~g~Gggnder 269 (596)
T COG0465 215 ----------SGSDFVEMFVG-----------VGASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDER 269 (596)
T ss_pred ----------CCHHHHHHHCC-----------CCCHHHHHHHHHHHCC----CCCEEEEEHHHHCCCCCCCCCCCCCHHH
T ss_conf ----------34446443147-----------8838889999985515----9966987634331454577889980699
Q ss_pred -HHHHHHHHHHHHCCCCC-CEEEEECCCCCCCHHHHCEE----EEEECCCCCHHHHHHHHHH---HCCCCCHHHHHHHHH
Q ss_conf -00145677766303434-16765044335730252036----9886479998999999997---278889678999999
Q gi|254780217|r 145 -NAANALLKSLEEPPQKV-LFILISHASPTILSTIRSRC----LSIKFNSLSENNLYKALEQ---LKIMGWDSKRDFVKI 215 (347)
Q Consensus 145 -~AaNALLK~LEEPp~~t-~fiLit~~~~~il~TI~SRc----~~i~f~~l~~~~~~~~L~~---~~~~~~~~~~~~~~~ 215 (347)
+..|-||=-++-=..|. ++++.++|...++.|=+.|- +.+-+..++-..-.++|+- ...-.++-....+++
T Consensus 270 EQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V~l~~iAr 349 (596)
T COG0465 270 EQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIAR 349 (596)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99998888520157888754885267874333176528877662554478515657888788641577776678889864
Q ss_pred HCCCCHHH-HHHHHC
Q ss_conf 75989789-998814
Q gi|254780217|r 216 AAYGSVAR-AIKILH 229 (347)
Q Consensus 216 ~s~Gs~~~-A~~ll~ 229 (347)
...|-.|. ..++++
T Consensus 350 ~tpGfsGAdL~nl~N 364 (596)
T COG0465 350 GTPGFSGADLANLLN 364 (596)
T ss_pred HCCCCCCCHHHHHHH
T ss_conf 377856306765566
No 144
>pfam00493 MCM MCM2/3/5 family.
Probab=97.88 E-value=0.00018 Score=55.61 Aligned_cols=137 Identities=19% Similarity=0.160 Sum_probs=79.8
Q ss_pred HHHCCHHHHHHHHHHHHHCCCC------------CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCH
Q ss_conf 5610929999999999982889------------8166311798988899999999998177998864312101267886
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGRM------------HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~l------------~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~ 79 (347)
.+|+||+.++.-+.=++-.|.- .| +|+.|.||+||+.+.+.+++ +. ...-..+|.-.+
T Consensus 24 P~i~G~~~vK~ai~l~l~gg~~~~~~~~~~~Rg~ih-iLLvGdPG~gKSqlLk~~~~-~~---pr~~~tsg~~ss----- 93 (327)
T pfam00493 24 PSIYGHEDVKKAILLQLFGGVKKNLPDGTRLRGDIN-VLLVGDPGTAKSQLLKYVAK-LA---PRAVYTSGKGSS----- 93 (327)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE-EEEECCCCCCHHHHHHHHHH-HC---CCCEEECCCCCC-----
T ss_conf 712498799999999980898765888862036511-89846998156099999998-68---870883177665-----
Q ss_pred HHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCC-C-CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 7999967898754530010001013421232378875544310222-1-1112103532205542400014567776630
Q gi|254780217|r 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT-A-NTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 (347)
Q Consensus 80 ~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~-~-~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP 157 (347)
-.++. -....++.+ .+|.-.. + ..+..-|+.|||.|+|+...+.||+-.||+=
T Consensus 94 ---------~~GLT-a~~~~d~~~---------------~~~~leaGalvlAd~Gv~cIDEfdk~~~~d~saL~EAMEqq 148 (327)
T pfam00493 94 ---------AAGLT-AAVVRDPDT---------------GEWTLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQ 148 (327)
T ss_pred ---------CCCCE-EEEEEECCC---------------CCEEEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf ---------67761-589980688---------------83698368477558982785005558876799999999868
Q ss_pred CCC------------CCEEEEECCCCC--------------CCHHHHCEEEE
Q ss_conf 343------------416765044335--------------73025203698
Q gi|254780217|r 158 PQK------------VLFILISHASPT--------------ILSTIRSRCLS 183 (347)
Q Consensus 158 p~~------------t~fiLit~~~~~--------------il~TI~SRc~~ 183 (347)
.-. -..+|.|.||-. +++++.||--.
T Consensus 149 tVsIaKaGi~~tL~ar~sVlAaaNP~~g~yd~~~~~~~ni~Lp~~lLsRFDL 200 (327)
T pfam00493 149 TISIAKAGIVATLNARCSVLAAANPIFGRYDPKKSVAENINLPPPLLSRFDL 200 (327)
T ss_pred EEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCEEE
T ss_conf 1776338538972587179985277677378888988855897677450107
No 145
>KOG0738 consensus
Probab=97.88 E-value=0.00023 Score=54.77 Aligned_cols=195 Identities=17% Similarity=0.147 Sum_probs=110.8
Q ss_pred CCHHHHCCHHHHHHHHHHHHH----------CCCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC
Q ss_conf 756561092999999999998----------28898-1663117989888999999999981779988643121012678
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYC----------SGRMH-HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~----------~~~l~-ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~ 77 (347)
-.+++|.|-+++++.|..+.. ..|-| -++|.+||||+||+.+|.++|.. |.....+...-...|.=.
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE--c~tTFFNVSsstltSKwR 286 (491)
T KOG0738 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE--CGTTFFNVSSSTLTSKWR 286 (491)
T ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH--HCCEEEEECHHHHHHHHC
T ss_conf 676763164999999998875444248887424465300055679997478999999886--167278740245655532
Q ss_pred CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCHHH--HHHHHHHCCHHHHHHHHHHH
Q ss_conf 8679999678987545300100010134212323788755443102-22111121035--32205542400014567776
Q gi|254780217|r 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS-LTANTGYWRVI--MIDPVDGMNRNAANALLKSL 154 (347)
Q Consensus 78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~-~~~~~~~~Ki~--IId~ad~ln~~AaNALLK~L 154 (347)
....+.+. =+|++. .......|=||+|-.|...=. -+-+++.+||= ++-+.|-|.....|
T Consensus 287 GeSEKlvR-----lLFemA------RfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~------ 349 (491)
T KOG0738 287 GESEKLVR-----LLFEMA------RFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLEN------ 349 (491)
T ss_pred CCHHHHHH-----HHHHHH------HHHCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC------
T ss_conf 52699999-----999999------8748853533567788725798650367888888999986334444456------
Q ss_pred HHCCCCCCEEEEECC-CCCCCHHHHCEEEE-EECCCCCHHHHHHHHHHH----CCCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 630343416765044-33573025203698-864799989999999972----78889678999999759897899988
Q gi|254780217|r 155 EEPPQKVLFILISHA-SPTILSTIRSRCLS-IKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAIKI 227 (347)
Q Consensus 155 EEPp~~t~fiLit~~-~~~il~TI~SRc~~-i~f~~l~~~~~~~~L~~~----~~~~~~~~~~~~~~~s~Gs~~~A~~l 227 (347)
...+|+|.++| |=.|-...|-|.-+ +.+ ||+..+-++.|-+. -...++-..+.++..++|=-|.-+..
T Consensus 350 ----~k~VmVLAATN~PWdiDEAlrRRlEKRIyI-PLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~n 423 (491)
T KOG0738 350 ----SKVVMVLAATNFPWDIDEALRRRLEKRIYI-PLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITN 423 (491)
T ss_pred ----CEEEEEEECCCCCCCHHHHHHHHHHHHEEE-ECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf ----516999843689820579999987630331-28787899999997623566888756999999856887377999
No 146
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.87 E-value=7.7e-05 Score=58.64 Aligned_cols=198 Identities=17% Similarity=0.197 Sum_probs=111.4
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHH
Q ss_conf 5587565610929999999999982---8898166311798988899999999998177998864312101267886799
Q gi|254780217|r 6 FDPVYNQRLFGHEDIEKFLSQYYCS---GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK 82 (347)
Q Consensus 6 ~~p~~~~~i~G~~~~~~~L~~~~~~---~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~ 82 (347)
.....++.++|.....+.+..-++. ..+| .|+.|+.|+||..+|..+. + .+... ...|.-.. .|.
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~ap~~~~--vLi~GetGtGKel~A~~iH-~-~s~r~-~~~PFI~~-------NCa 139 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAYAPSGLP--VLIIGETGTGKELFARLIH-A-LSARR-AEAPFIAF-------NCA 139 (403)
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCC--EEEECCCCCCHHHHHHHHH-H-HHHCC-CCCCEEEE-------EHH
T ss_conf 02215666635688899999999861899984--7986688753889999999-8-61213-58987997-------777
Q ss_pred HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH------
Q ss_conf 99678987545300100010134212323788755443102221111210353220554240001456777663------
Q gi|254780217|r 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE------ 156 (347)
Q Consensus 83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE------ 156 (347)
.+.. +..+...+.....--+|.....-+ +-.. .. -.+.++|++++|-.+.|-.||..|||
T Consensus 140 ~~~e-n~~~~eLFG~~kGaftGa~~~k~G----------lfe~-A~--GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rv 205 (403)
T COG1221 140 AYSE-NLQEAELFGHEKGAFTGAQGGKAG----------LFEQ-AN--GGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRV 205 (403)
T ss_pred HHCC-CHHHHHHHCCCCCEEECCCCCCCC----------HHEE-CC--CCEEEHHHHHHCCHHHHHHHHHHHHCCCEEEC
T ss_conf 7376-777777732000000256678676----------4205-27--97776563653798589999999871865766
Q ss_pred -----CCCCCCEEEEECCC--CCCCH--HHHCEEEE--EECCCCCHH--HHH----HHHHHH----C---CCCC-HHHHH
Q ss_conf -----03434167650443--35730--25203698--864799989--999----999972----7---8889-67899
Q gi|254780217|r 157 -----PPQKVLFILISHAS--PTILS--TIRSRCLS--IKFNSLSEN--NLY----KALEQL----K---IMGW-DSKRD 211 (347)
Q Consensus 157 -----Pp~~t~fiLit~~~--~~il~--TI~SRc~~--i~f~~l~~~--~~~----~~L~~~----~---~~~~-~~~~~ 211 (347)
.|.++.+|..|+.. +.++. |+..|+.. +.++||.+- |+. -+++.. + .... +....
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCCCCCCCCCEEEECCCCCHHHHHHHHCCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 88888677740451356687999874052556416754318972435555999999999999997399988888999999
Q ss_pred HHHHHCCCCHHHHHHHHC
Q ss_conf 999975989789998814
Q gi|254780217|r 212 FVKIAAYGSVARAIKILH 229 (347)
Q Consensus 212 ~~~~~s~Gs~~~A~~ll~ 229 (347)
.+..--.|++|+..+.++
T Consensus 286 L~~y~~pGNirELkN~Ve 303 (403)
T COG1221 286 LLAYDWPGNIRELKNLVE 303 (403)
T ss_pred HHHCCCCCCHHHHHHHHH
T ss_conf 984889983999999999
No 147
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.87 E-value=0.00041 Score=52.76 Aligned_cols=204 Identities=16% Similarity=0.171 Sum_probs=116.4
Q ss_pred CCC-CCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHH
Q ss_conf 555-5875656109299999999999828898166311798988899999999998177998864312101267886799
Q gi|254780217|r 4 RAF-DPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK 82 (347)
Q Consensus 4 ~~~-~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~ 82 (347)
-|. .|+.-+.++--+...+.|... ...++ .++++|.|-||||++..+++. ........++....++.. .+.
T Consensus 5 tK~~pP~~~~~~v~R~rL~~~L~~~-~~~~l---~lv~APaG~GKTtl~a~w~~~---~~~~~Wlsld~~d~~~~~-f~~ 76 (903)
T PRK04841 5 SKLSRPVRLDHTVVRERLLAKLSGA-NNYRL---VLVRSPAGYGKTTLASQWAAG---KNNVGWYSLDESDNQPER-FAS 76 (903)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH-CCCCE---EEEECCCCCCHHHHHHHHHHC---CCCEEEEECCCCCCCHHH-HHH
T ss_conf 2568999987825547799999851-58997---999779998899999999834---998599858854489999-999
Q ss_pred HH-HC--CCCCCEEEECCCCHHHCCCCCCCCCHHHH-HHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH-HHHC
Q ss_conf 99-67--89875453001000101342123237887-55443102221111210353220554240001456777-6630
Q gi|254780217|r 83 QM-AS--HALHDFLYLSYSLNPKTGKWRTVITVDEI-RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKS-LEEP 157 (347)
Q Consensus 83 ~i-~~--~~hpd~~~i~~~~~~k~~~~~~~I~vd~I-R~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~-LEEP 157 (347)
.+ .+ ...|+..--.....+ ......++.+ ..+...+.. .+.-=++|||+.|.++......+|.. ++..
T Consensus 77 ~l~~al~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~---~~~~~~lvlDD~h~i~~~~~~~~l~~Ll~~~ 149 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAE----KRQYASLTSLFAQLFIELSD---WHQPLYLVLDDYHLITNPEIHEAMRFFLRHQ 149 (903)
T ss_pred HHHHHHHHHCCCCCCHHHHCCC----CCCCCCHHHHHHHHHHHHHC---CCCCEEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999856543311231135----56655499999999999755---8998699986836488868999999999838
Q ss_pred CCCCCEEEEECCCCCC-CHHHHCEEEEEECC----CCCHHHHHHHHHH-HCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 3434167650443357-30252036988647----9998999999997-2788896789999997598978
Q gi|254780217|r 158 PQKVLFILISHASPTI-LSTIRSRCLSIKFN----SLSENNLYKALEQ-LKIMGWDSKRDFVKIAAYGSVA 222 (347)
Q Consensus 158 p~~t~fiLit~~~~~i-l~TI~SRc~~i~f~----~l~~~~~~~~L~~-~~~~~~~~~~~~~~~~s~Gs~~ 222 (347)
|++..+|++|.+.-.+ +.+.+.+-+.+.+. ..+.+|+.+++.. .+...++++...+...++|=|.
T Consensus 150 p~~l~lvl~sR~~p~l~l~~l~~~~~l~~i~~~dL~Ft~~E~~~~~~~~~g~~l~~~~~~~l~~~TeGW~a 220 (903)
T PRK04841 150 PENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDRVEGWPT 220 (903)
T ss_pred CCCEEEEEEECCCCCCCHHHHHHCCEEEEECHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHH
T ss_conf 98838998768999875245774595699868875999999999998625999999999999997087899
No 148
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=97.86 E-value=0.0053 Score=43.84 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=102.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHH
Q ss_conf 16631179898889999999999817799886431210126788679999678987545300100010134212323788
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~ 114 (347)
.++|||||.---+...+..+++.+.-..+ .|. ++..++. + .+. ++
T Consensus 21 ~~~LlyG~d~glv~e~~~~l~~~~~~~~~---~~f---------------------~~~~l~~--~--------el~-~d 65 (343)
T PRK06585 21 RAVLLYGPDRGLVRERARRLAKSVVDDPD---DPF---------------------AVVRLDG--D--------ELD-AD 65 (343)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCCC---CCC---------------------EEEEECH--H--------HHH-CC
T ss_conf 58999638764799999999997255667---874---------------------1577479--9--------883-39
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH------HCEEEEEECCC
Q ss_conf 755443102221111210353220554240001456777663034341676504433573025------20369886479
Q gi|254780217|r 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI------RSRCLSIKFNS 188 (347)
Q Consensus 115 IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI------~SRc~~i~f~~ 188 (347)
.-.+.+.++..|..|++|+|+|+++. .....++-..+++|++++++|+.+.+..+= ..+ ...|..+.+-+
T Consensus 66 ~~~l~de~~t~slF~~~rlI~i~~~~---d~~~~~l~~~l~~~~~~~~lIi~a~~L~k~-skLrk~~e~~~~~~~i~cY~ 141 (343)
T PRK06585 66 PARLEDEANTISLFGGRRLIWVRAGG---KSLAAALKALLAEPPGDAFIVIEAGDLKKG-SSLRKLFETAASAAAIPCYA 141 (343)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCC---HHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CHHHHHHHHCCCEEEEEECC
T ss_conf 99999998476876898489972687---256999999981789982899973897731-18999998647869995006
Q ss_pred CCHHHHHHHHH----HHCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99899999999----727888967899999975989789998
Q gi|254780217|r 189 LSENNLYKALE----QLKIMGWDSKRDFVKIAAYGSVARAIK 226 (347)
Q Consensus 189 l~~~~~~~~L~----~~~~~~~~~~~~~~~~~s~Gs~~~A~~ 226 (347)
.+..++.+|+. ..+..++.++...+...+.|+...+.+
T Consensus 142 d~~~~l~~~i~~~l~~~g~~i~~~a~~~L~~~~g~d~~~~~~ 183 (343)
T PRK06585 142 DDERDLARLIDDELAKAGLRITPDARAYLVALLGGDRLASRN 183 (343)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 998899999999999829997799999999873427999999
No 149
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=97.83 E-value=1.2e-05 Score=65.23 Aligned_cols=118 Identities=24% Similarity=0.295 Sum_probs=67.6
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCC
Q ss_conf 56561092999999999998288981663117989888999999999981779988643121012678867999967898
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~h 89 (347)
=|.+|+||++.++-|.=+...| |.+||.||||+|||.+|.++-. || ++.++...-+... +.... +..
T Consensus 192 DL~dv~GQ~~akRAleIAaAGG---HNlll~GPPGsGKTmla~r~~g-iL--P~L~~~EalE~~~-----v~S~~--~~l 258 (505)
T TIGR00368 192 DLKDVKGQQHAKRALEIAAAGG---HNLLLLGPPGSGKTMLASRLQG-IL--PPLTNEEALETAR-----VLSLV--GKL 258 (505)
T ss_pred CCCCCCCHHHCCHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHC-CC--CCCCCHHHHHHHH-----HHHHH--HHH
T ss_conf 4322545101102677753135---6437678249626899987510-57--8645126666788-----88888--757
Q ss_pred CCEEEE--CCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC-------------CCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 754530--0100010134212323788755443102221111-------------2103532205542400014567776
Q gi|254780217|r 90 HDFLYL--SYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG-------------YWRVIMIDPVDGMNRNAANALLKSL 154 (347)
Q Consensus 90 pd~~~i--~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~-------------~~Ki~IId~ad~ln~~AaNALLK~L 154 (347)
-+...+ -|++ |.=....+..+..| ..=|.++||+-.+-++--.||.--|
T Consensus 259 ~~~~~~~rQRPF----------------R~PHHsAS~~~lvGGG~~P~PGEiSLAhnGvLFLDEl~EF~r~vL~~LR~Pl 322 (505)
T TIGR00368 259 IDRKQWKRQRPF----------------RSPHHSASKPALVGGGSIPKPGEISLAHNGVLFLDELPEFKRKVLDALREPL 322 (505)
T ss_pred HHCCCHHCCCCC----------------CCCCCCCCCCCCCCCCCCCCCCCEEHHCCCCHHHHCCHHHHHHHHHHHCCCC
T ss_conf 652301106867----------------7865002566640587522285120200541043222044678998717874
Q ss_pred HH
Q ss_conf 63
Q gi|254780217|r 155 EE 156 (347)
Q Consensus 155 EE 156 (347)
|.
T Consensus 323 Ed 324 (505)
T TIGR00368 323 ED 324 (505)
T ss_pred CC
T ss_conf 26
No 150
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.83 E-value=0.0009 Score=50.03 Aligned_cols=161 Identities=17% Similarity=0.238 Sum_probs=84.1
Q ss_pred CCHHHHCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH--CCCCCCCHHHHHHH
Q ss_conf 7565610929999999999982-88981663117989888999999999981779988643121--01267886799996
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM--CNPDPCSPFVKQMA 85 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~--~~~~~~~~~~~~i~ 85 (347)
..+.+++|+-.+.+.+...+.. .+-....|++|++|+||..+|+++= +...-...|+-. |..-+.......+-
T Consensus 135 ~~~~~liG~S~~m~~v~~~i~~~a~~~~pVLI~GE~GTGK~~~Ar~IH----~~S~r~~~pfi~vnC~~~~~~~~e~eLF 210 (469)
T PRK10923 135 GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH----RHSPRAKAPFIALNMAAIPKDLIESELF 210 (469)
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH----HCCCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 675565468999999999999985889978998989826999999999----7488779995787678899778999970
Q ss_pred CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC--------
Q ss_conf 789875453001000101342123237887554431022211112103532205542400014567776630--------
Q gi|254780217|r 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP-------- 157 (347)
Q Consensus 86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP-------- 157 (347)
|.. + +... +..+.| ...+.. ..|+ .+++|+++.|+.+.|..||..||+-
T Consensus 211 -G~~------------~-gaf~---ga~~~~--~g~~e~--a~~G--TLfLdeI~~L~~~~Q~kLl~~L~~~~~~~~g~~ 267 (469)
T PRK10923 211 -GHE------------K-GAFT---GANTIR--QGRFEQ--ADGG--TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGY 267 (469)
T ss_pred -CCC------------C-CCCC---CCCCCC--CCCHHH--CCCC--CEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCC
T ss_conf -876------------6-7878---864245--873664--3899--265663664899999999999855937857998
Q ss_pred ---CCCCCEEEEECCC-------CCCCHHHHCEEE--EEECCCCCH--HHHHH
Q ss_conf ---3434167650443-------357302520369--886479998--99999
Q gi|254780217|r 158 ---PQKVLFILISHAS-------PTILSTIRSRCL--SIKFNSLSE--NNLYK 196 (347)
Q Consensus 158 ---p~~t~fiLit~~~-------~~il~TI~SRc~--~i~f~~l~~--~~~~~ 196 (347)
+.++.+|..|+.. ..+.+-+.-|-. .+.++||.+ +++..
T Consensus 268 ~~~~~d~RiIaat~~~L~~~v~~g~Fr~dLyyrL~~~~I~lPpLReR~eDI~~ 320 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR 320 (469)
T ss_pred CEEEECCEEEEECCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHH
T ss_conf 51221437997078799998660817799998644240158465446534999
No 151
>PRK09087 hypothetical protein; Validated
Probab=97.81 E-value=0.00067 Score=51.05 Aligned_cols=164 Identities=13% Similarity=0.135 Sum_probs=96.0
Q ss_pred CHHHH-CCH--HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHC
Q ss_conf 56561-092--999999999998288981663117989888999999999981779988643121012678867999967
Q gi|254780217|r 10 YNQRL-FGH--EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS 86 (347)
Q Consensus 10 ~~~~i-~G~--~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (347)
+++++ +|. +.+.+.+. .+....-| .+.+|||+|+||+-++..+++.--+
T Consensus 19 ~~dnF~vs~~N~~a~~~l~-~~~~w~~~-~~~L~Gp~gsGKTHL~~~~~~~~~a-------------------------- 70 (226)
T PRK09087 19 GRDDLVVTESNRAAVSLVD-RWPNWPSP-VVVLAGPVGSGKTHLASIWREKADA-------------------------- 70 (226)
T ss_pred CCCCEEECCCHHHHHHHHH-HCCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCC--------------------------
T ss_conf 7336477576999999998-47267777-5899899999886999999998099--------------------------
Q ss_pred CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CCCEEE
Q ss_conf 8987545300100010134212323788755443102221111210353220554240001456777663034-341676
Q gi|254780217|r 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ-KVLFIL 165 (347)
Q Consensus 87 ~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~-~t~fiL 165 (347)
..+... .+..+.. . ....+.++||++|....+ ..+|.-++.+--. ++.+++
T Consensus 71 ------~~~~~~----------~~~~~~~-------~----~~~~~~~~idd~d~~~~d-Ee~LFhl~N~~~~~~~~LLl 122 (226)
T PRK09087 71 ------LLVHPN----------EIGSDAA-------N----AAAERPVLIEDIDAGGFD-ETGLFHLINSVRQAGTSLLM 122 (226)
T ss_pred ------EEECHH----------HCCHHHH-------H----HHCCCCEEEECCCCCCCC-HHHHHHHHHHHHHCCCEEEE
T ss_conf ------683668----------7474667-------6----532798899748777747-89999999999853987999
Q ss_pred EECC-CCC---CCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 5044-335---730252036---9886479998999999997----27888967899999975989789998814
Q gi|254780217|r 166 ISHA-SPT---ILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 166 it~~-~~~---il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
+++. |.. -+|=++||. ..+.+.+|+.+.+...|.+ .+...+++...++..-.+-+...+..+++
T Consensus 123 ts~~~p~~l~~~L~DL~SRL~~~~~~~I~~pdD~ll~~~L~k~~~~r~l~l~~~v~~yll~r~~Rs~~~l~~~l~ 197 (226)
T PRK09087 123 TSRLWPSAWNVKLPDLKSRLKAATVVEIGEPDDALLSGVIFKLFADRQLYVEPHVVYYLVSRMERSLFAAQTIVE 197 (226)
T ss_pred ECCCCHHHCCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 889895666762468999985785798359998999999999987576578888999999845889999999999
No 152
>pfam00931 NB-ARC NB-ARC domain.
Probab=97.77 E-value=5.4e-05 Score=59.84 Aligned_cols=186 Identities=12% Similarity=0.071 Sum_probs=92.3
Q ss_pred HHHHHHHHHHH--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCH--HHHHHHCCCCCCEEE
Q ss_conf 99999999998--28898166311798988899999999998177998864312101267886--799996789875453
Q gi|254780217|r 19 DIEKFLSQYYC--SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP--FVKQMASHALHDFLY 94 (347)
Q Consensus 19 ~~~~~L~~~~~--~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~--~~~~i~~~~hpd~~~ 94 (347)
+.++.|.+.+. ++.+. -+=++|+.|+||||+|+.+-+..-.... ...-++.+.+...+. ..+.+...
T Consensus 3 ~~~~~i~~~L~~~~~~~~-vI~I~G~gGiGKTtLA~~v~~~~~i~~~-F~~~~wv~vs~~~~~~~i~~~i~~~------- 73 (285)
T pfam00931 3 DMIEALIEKLLEMSENLG-VVGIVGMGGVGKTTLAKQIYNDDSVGGH-FDSVAWVVVSKTYTEFRLQKDILQE------- 73 (285)
T ss_pred HHHHHHHHHHHCCCCCCE-EEEEECCCCCCHHHHHHHHHCCHHHHHC-CCEEEEEEECCCCCHHHHHHHHHHH-------
T ss_conf 899999999864898953-9998899956399999999716556505-9838999979766689999999998-------
Q ss_pred ECCCCHHHCCCCCCCCCHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 00100010134212323788755-44310222111121035322055424000145677766303434167650443357
Q gi|254780217|r 95 LSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 (347)
Q Consensus 95 i~~~~~~k~~~~~~~I~vd~IR~-l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~i 173 (347)
+... ......-..++... +.+++ .+++=.+|+|++.. ..-.+.+...+-.=..++.+|++|+ ...+
T Consensus 74 l~~~-----~~~~~~~~~~~l~~~l~~~L-----~~kr~LiVLDDVw~--~~~~~~l~~~~~~~~~gSrIIvTTR-~~~V 140 (285)
T pfam00931 74 LGLD-----DSDWVEKNESELAVKIKEAL-----LRKRFLLVLDDVWE--KNDWDKIGVPFPDGENGSRVIVTTR-SESV 140 (285)
T ss_pred HCCC-----CCCCCCCCHHHHHHHHHHHH-----CCCCEEEEECCCCC--HHHHHHHHCCCCCCCCCCEEEEECC-CHHH
T ss_conf 5666-----54555578999999999997-----27966999638887--8999997345757899827998557-5899
Q ss_pred CHHHHCEEEEEECCCCCHHHHHHHHHHHCC---CCC----HHHHHHHHHHCCCCHHHHHH
Q ss_conf 302520369886479998999999997278---889----67899999975989789998
Q gi|254780217|r 174 LSTIRSRCLSIKFNSLSENNLYKALEQLKI---MGW----DSKRDFVKIAAYGSVARAIK 226 (347)
Q Consensus 174 l~TI~SRc~~i~f~~l~~~~~~~~L~~~~~---~~~----~~~~~~~~~~s~Gs~~~A~~ 226 (347)
..+....+..+.+.++++++..+.+.+.-. ... ++....++..+.|.|-.+.-
T Consensus 141 ~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~l~~~~~~Iv~~C~GlPLai~~ 200 (285)
T pfam00931 141 AGRMGGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKV 200 (285)
T ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 987378883476168987999999999846898999767999999999985899499999
No 153
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=97.77 E-value=3e-05 Score=61.88 Aligned_cols=125 Identities=22% Similarity=0.270 Sum_probs=72.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
.+ +|+.||=|+|||.+|.-+|+.|.--....+. .-+-++ . ..+.. ||
T Consensus 153 SN-ILLiGPTGSGKTLLAqTLA~~L~VPfAiADA-------------TtLTEA----G-------------YVGED--VE 199 (452)
T TIGR00382 153 SN-ILLIGPTGSGKTLLAQTLARILNVPFAIADA-------------TTLTEA----G-------------YVGED--VE 199 (452)
T ss_pred CC-EEEECCCCCCHHHHHHHHHHHCCCCEEECCH-------------HHHHCC----C-------------CCCCC--HH
T ss_conf 66-2454688852689999999873887421111-------------102006----6-------------42422--88
Q ss_pred HHH-HHHHHCCCCCCCCCCHHHHHHHHHHCCHH--------------HHHHHHHHHHH-----CCCC-------------
Q ss_conf 875-54431022211112103532205542400--------------01456777663-----0343-------------
Q gi|254780217|r 114 EIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRN--------------AANALLKSLEE-----PPQK------------- 160 (347)
Q Consensus 114 ~IR-~l~~~~~~~~~~~~~Ki~IId~ad~ln~~--------------AaNALLK~LEE-----Pp~~------------- 160 (347)
-|= .|+....+--....+=||.||++|+.++- -|.||||++|- ||.+
T Consensus 200 NIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSGEGVQQALLKi~EGTvA~vPPqGGRKHP~~~~iqiD 279 (452)
T TIGR00382 200 NILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPQQEFIQID 279 (452)
T ss_pred HHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEC
T ss_conf 99999987414552452785089842231012157780112217554999999876032343175448868865768864
Q ss_pred -CCEEEEECCCC-CCCHHHHCEEEE---EECCCCCH
Q ss_conf -41676504433-573025203698---86479998
Q gi|254780217|r 161 -VLFILISHASP-TILSTIRSRCLS---IKFNSLSE 191 (347)
Q Consensus 161 -t~fiLit~~~~-~il~TI~SRc~~---i~f~~l~~ 191 (347)
+-|+|||-=.- -|=.-|..|... +-|.....
T Consensus 280 Ts~ILFICGGAF~GL~~iI~~R~~~~~~iGF~~~~~ 315 (452)
T TIGR00382 280 TSNILFICGGAFVGLEKIIKKRTEKKSSIGFGAEVK 315 (452)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 764001105434448999988745553335455210
No 154
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=97.74 E-value=0.00024 Score=54.68 Aligned_cols=116 Identities=17% Similarity=0.242 Sum_probs=60.6
Q ss_pred HCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH--CCCCCCCHHHHHHHCCCCC
Q ss_conf 10929999999999982-88981663117989888999999999981779988643121--0126788679999678987
Q gi|254780217|r 14 LFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM--CNPDPCSPFVKQMASHALH 90 (347)
Q Consensus 14 i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~--~~~~~~~~~~~~i~~~~hp 90 (347)
+||+....+.+...+.. .+-+..+|++|++|+||..+|+++-.. . .-...|+-. |..-+.......+ =|..+
T Consensus 1 lIG~S~~m~~l~~~i~~~a~~~~pVLI~GE~GtGK~~lAr~IH~~--S--~r~~~pfi~vnc~~~~~~~le~~L-FG~~~ 75 (168)
T pfam00158 1 LIGESPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQL--S--PRADGPFVAVNCAAIPEELLESEL-FGHEK 75 (168)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH--C--CCCCCCCCCCCCCCCCHHHHHHHH-CCCCC
T ss_conf 973899999999999999588998899899988889999999985--2--435688312567899877999987-58766
Q ss_pred CEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 545300100010134212323788755443102221111210353220554240001456777663
Q gi|254780217|r 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 91 d~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
+-+ .+... .+ ...+. ...| -.+++|+++.|..+.|..||+.||+
T Consensus 76 g~f---------~ga~~-------~~--~G~le--~A~g--GTL~LdeI~~L~~~~Q~~Ll~~L~~ 119 (168)
T pfam00158 76 GAF---------TGAVS-------DR--KGLFE--LADG--GTLFLDEIGELPLELQAKLLRVLQE 119 (168)
T ss_pred CCC---------CCCCC-------CC--CCCEE--ECCC--CEEECCCHHHCCHHHHHHHHHHHHC
T ss_conf 766---------89875-------78--99642--2699--8788024413999999999999857
No 155
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.73 E-value=0.0011 Score=49.41 Aligned_cols=136 Identities=21% Similarity=0.234 Sum_probs=73.2
Q ss_pred HHHCCHHHHHHHHHHHHHCCC------------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCH
Q ss_conf 561092999999999998288------------98166311798988899999999998177998864312101267886
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR------------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP 79 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~------------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~ 79 (347)
.+|+||+.++.-+.=++-.|. =.| +|+.|.||+||+.+-+..++ +- +.+-..+|.-++
T Consensus 203 P~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~ih-iLLvGDPGtgKSqlLk~~~~-ia---prsvytsG~gsS----- 272 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDIN-ILLLGDPGTAKSQLLKYVEK-TA---PRAVYTTGKGSS----- 272 (509)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCEE-EEEECCCCCCHHHHHHHHHH-HC---CCEEEEECCCCC-----
T ss_conf 732387889999999970887664898850415414-99846998236299999998-58---860687344455-----
Q ss_pred HHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 79999678987545300100010134212323788755443102221111210353220554240001456777663034
Q gi|254780217|r 80 FVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 (347)
Q Consensus 80 ~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~ 159 (347)
-..+- ....-++.++. ...+--.+- .+..-|+.||+.|.|+.+-.+||+-.|| .
T Consensus 273 ---------~aGLT-aav~rd~~~ge-----------~~leaGALV--lAD~GiccIDEfdKm~~~dr~alhEaME---Q 326 (509)
T smart00350 273 ---------AVGLT-AAVTRDPETRE-----------FTLEGGALV--LADNGVCCIDEFDKMDDSDRTAIHEAME---Q 326 (509)
T ss_pred ---------CCCCE-EEEEECCCCCC-----------EEECCCCEE--CCCCCEEEEEEHHHCCHHHHHHHHHHHH---H
T ss_conf ---------57706-89998178883-----------787256412--0567547852132078778999999997---4
Q ss_pred CCCEEEEECCCCCCCHHHHCEEEEEECC
Q ss_conf 3416765044335730252036988647
Q gi|254780217|r 160 KVLFILISHASPTILSTIRSRCLSIKFN 187 (347)
Q Consensus 160 ~t~fiLit~~~~~il~TI~SRc~~i~f~ 187 (347)
.|+-| ....|..|+.+||-.+.-.
T Consensus 327 Qtisi----aKaGi~~tL~aR~sVlAAa 350 (509)
T smart00350 327 QTISI----AKAGITTTLNARCSVLAAA 350 (509)
T ss_pred CEEEE----ECCCEEEEEECCCEEEEEE
T ss_conf 87787----4375179985573599865
No 156
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.70 E-value=0.0013 Score=48.73 Aligned_cols=188 Identities=16% Similarity=0.213 Sum_probs=97.9
Q ss_pred HHHHCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH--HCCCCCCCHHHHHHH
Q ss_conf 65610929999999999982---8898166311798988899999999998177998864312--101267886799996
Q gi|254780217|r 11 NQRLFGHEDIEKFLSQYYCS---GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR--MCNPDPCSPFVKQMA 85 (347)
Q Consensus 11 ~~~i~G~~~~~~~L~~~~~~---~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~--~~~~~~~~~~~~~i~ 85 (347)
..++||+-.+.+.|.+.+.. ..+| .|++|+.|+||..+|+++=+ ...-...|+- .|..-+.+ .++
T Consensus 185 ~~elIG~S~~m~~l~~~i~~vA~sd~p--VLI~GEtGTGKelvAr~IH~----~S~R~~~Pfv~vNCaalpe~----l~E 254 (510)
T PRK05022 185 QGEMIGQSPAMQQLKKEIEVVAASDLN--VLITGETGVGKELVARAIHQ----ASPRAVKPLVYLNCAALPES----LAE 254 (510)
T ss_pred CCCEEECCHHHHHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHHHH----CCCCCCCCCEEEECCCCCHH----HHH
T ss_conf 897520899999999999999689998--89889898139999999996----68878998578889999856----789
Q ss_pred CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC--------
Q ss_conf 789875453001000101342123237887554431022211112103532205542400014567776630--------
Q gi|254780217|r 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP-------- 157 (347)
Q Consensus 86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP-------- 157 (347)
+ .+| .. .| |..-.. ++.-...+.. ..|+ ..++|+++.|..+.|-.||+.||+-
T Consensus 255 s----eLF--Gh---~k-GaFtGA-----~~~r~G~fe~--A~gG--TLfLDEI~~Lpl~~Q~KLLrvLq~g~iqrvG~~ 315 (510)
T PRK05022 255 S----ELF--GH---VK-GAFTGA-----ISNRSGKFEL--ADGG--TLFLDEIGELPLALQAKLLRVLQYGEIQRVGSD 315 (510)
T ss_pred H----HHC--CC---CC-CCCCCC-----CCCCCCCEEE--CCCC--EEEEECHHHCCHHHHHHHHHHHHCCEEEECCCC
T ss_conf 9----865--97---77-886886-----5567881017--7898--798757454999999999999847958855899
Q ss_pred ---CCCCCEEEEECCCCCCCHHHHC-----------EEEEEECCCCCH--HHHHH----HHHHH-------CCCCCHHHH
Q ss_conf ---3434167650443357302520-----------369886479998--99999----99972-------788896789
Q gi|254780217|r 158 ---PQKVLFILISHASPTILSTIRS-----------RCLSIKFNSLSE--NNLYK----ALEQL-------KIMGWDSKR 210 (347)
Q Consensus 158 ---p~~t~fiLit~~~~~il~TI~S-----------Rc~~i~f~~l~~--~~~~~----~L~~~-------~~~~~~~~~ 210 (347)
+-++.+|-.|+. .+..-+.. -+..+.++||.+ +++.. ++.+. ...+++++.
T Consensus 316 ~~~~vdvRIIAATnr--dL~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl 393 (510)
T PRK05022 316 RSLRVDVRVIAATNR--DLREEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQ 393 (510)
T ss_pred CEEEEEEEEEEECCC--CHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 466666899960783--599998839638999987620403480865555409999999999999982989898889999
Q ss_pred HHHHHHC-CCCHHHHHHHHC
Q ss_conf 9999975-989789998814
Q gi|254780217|r 211 DFVKIAA-YGSVARAIKILH 229 (347)
Q Consensus 211 ~~~~~~s-~Gs~~~A~~ll~ 229 (347)
..+.... .|++++..+.+.
T Consensus 394 ~~L~~Y~WPGNVRELenvIe 413 (510)
T PRK05022 394 AALLQYDWPGNVRELEHVIS 413 (510)
T ss_pred HHHHCCCCCCHHHHHHHHHH
T ss_conf 99970999978999999999
No 157
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=97.69 E-value=9.8e-05 Score=57.78 Aligned_cols=179 Identities=15% Similarity=0.250 Sum_probs=111.5
Q ss_pred HHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH-----------HCCCCCCCCCHHHCCCCCCCH
Q ss_conf 656109299999999999828898166311798988899999999998-----------177998864312101267886
Q gi|254780217|r 11 NQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-----------LQNPDFSKAPVRMCNPDPCSP 79 (347)
Q Consensus 11 ~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l-----------lc~~~~~~~~~~~~~~~~~~~ 79 (347)
|+=||||+..+.-|.=...+-++.- .|+.|++|+||+|+|+.++.-| -|.++....-|..|
T Consensus 3 F~AiVGQe~LK~ALLL~Av~P~iGG-VLirG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~~P~~~C~~C------- 74 (688)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVNPRIGG-VLIRGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPDDPEEWCEEC------- 74 (688)
T ss_pred CCCCCCHHHHHHHHHHEEECCCCCE-EEEECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHH-------
T ss_conf 7422142798653210025266370-78877888627898884876160236640478887778870400676-------
Q ss_pred HHHHHH-CC----CCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHH-HCCCCC---CCCCCHHHHHHHHHHCCHHHHHHH
Q ss_conf 799996-78----987545300100010134212323788755443-102221---111210353220554240001456
Q gi|254780217|r 80 FVKQMA-SH----ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY-FLSLTA---NTGYWRVIMIDPVDGMNRNAANAL 150 (347)
Q Consensus 80 ~~~~i~-~~----~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~-~~~~~~---~~~~~Ki~IId~ad~ln~~AaNAL 150 (347)
-+++. .| ....+.+|+.+..--..+.=..+-|+ |.|.. .-...| ....+.|.-|||+-.|...=.|.|
T Consensus 75 -~~~~~~~G~~~~~~~~~~~V~LPlgATEDRVvG~LDi~--~al~~G~~~FqPGLLA~AhrGiLYiDEVNLLdDhlVD~l 151 (688)
T TIGR02442 75 -RRKLEEQGTLPSEQRPVPFVNLPLGATEDRVVGSLDIE--RALKEGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVL 151 (688)
T ss_pred -HHHHHCCCCCCCCCCCCEEEECCCCCCHHHHCCHHHHH--HHHHHCHHHHCCCCHHHHCCCEEEEEEECCCCCHHHHHH
T ss_conf -75552047753135873588658775233221305489--998718566078861754687167852001441477899
Q ss_pred HHHHHHCC-----------CCCCEEEE-ECCCC--CCCHHHHCEE-EEEECCCC-CHHHHHHHHHH
Q ss_conf 77766303-----------43416765-04433--5730252036-98864799-98999999997
Q gi|254780217|r 151 LKSLEEPP-----------QKVLFILI-SHASP--TILSTIRSRC-LSIKFNSL-SENNLYKALEQ 200 (347)
Q Consensus 151 LK~LEEPp-----------~~t~fiLi-t~~~~--~il~TI~SRc-~~i~f~~l-~~~~~~~~L~~ 200 (347)
|-....=- -=+.|+|+ |=||+ .|=|=|+=|- ..+.+... +.++-.+++..
T Consensus 152 LDaaA~G~n~VEREG~S~~Hparf~L~GTMNPEEG~LRPQLLDRFGL~V~v~~~~d~~~R~Ev~~R 217 (688)
T TIGR02442 152 LDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAASRDPEERVEVIRR 217 (688)
T ss_pred HHHHHCCCEEEEECCCCHHCHHHHHHHCCCCCCHHHHCHHHHHHHHCEEEECCCCCHHHHHHHHHH
T ss_conf 998764800676357430011455322037852211022324244011550243586689999999
No 158
>KOG0740 consensus
Probab=97.67 E-value=0.00022 Score=54.94 Aligned_cols=175 Identities=18% Similarity=0.150 Sum_probs=99.7
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHC-----------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC-CCCCC-CHH
Q ss_conf 555587565610929999999999982-----------88981663117989888999999999981779-98864-312
Q gi|254780217|r 4 RAFDPVYNQRLFGHEDIEKFLSQYYCS-----------GRMHHALLFEGEQGIGKATLGFRYAGHVLQNP-DFSKA-PVR 70 (347)
Q Consensus 4 ~~~~p~~~~~i~G~~~~~~~L~~~~~~-----------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~-~~~~~-~~~ 70 (347)
..-++-.++++-|.+.+++.+..+..- ...+-++|+-||||.||+.+++++|....... +.+.. -.+
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHEECCCCCCHHHHHHHHHHHHCCEEEECCHHHHHH
T ss_conf 02775413577405668998654232204553765235445311120058988447999999862066576306888653
Q ss_pred HCCCCC--CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC------
Q ss_conf 101267--886799996789875453001000101342123237887554431022211112103532205542------
Q gi|254780217|r 71 MCNPDP--CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM------ 142 (347)
Q Consensus 71 ~~~~~~--~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~l------ 142 (347)
....+. .-...-+++..-.|. |++||++|.+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPs-----------------------------------------vifidEidslls~Rs~ 263 (428)
T KOG0740 225 KYVGESEKLVRALFKVARSLQPS-----------------------------------------VIFIDEIDSLLSKRSD 263 (428)
T ss_pred HCCCHHHHHHHHHHHHHHHCCCE-----------------------------------------EEEECHHHHHHHHCCC
T ss_conf 24670778999999998713970-----------------------------------------8984025678863687
Q ss_pred -----CHHHHHHHHHH----HHHCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHH-----HHHHHCCCCCHH
Q ss_conf -----40001456777----6630343416765044335730252036988647999899999-----999727888967
Q gi|254780217|r 143 -----NRNAANALLKS----LEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYK-----ALEQLKIMGWDS 208 (347)
Q Consensus 143 -----n~~AaNALLK~----LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~-----~L~~~~~~~~~~ 208 (347)
+.-...-+|=+ .=-|.++.++|=+||.|..+-.-++-|-+++-+-|++..+.+. .|++......+.
T Consensus 264 ~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~ 343 (428)
T KOG0740 264 NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDL 343 (428)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 54544555655777654044578887079981588836778888887103155359887899999999997687874177
Q ss_pred HHHHHHHHCCC
Q ss_conf 89999997598
Q gi|254780217|r 209 KRDFVKIAAYG 219 (347)
Q Consensus 209 ~~~~~~~~s~G 219 (347)
+...++..++|
T Consensus 344 d~~~l~~~Teg 354 (428)
T KOG0740 344 DISLLAKVTEG 354 (428)
T ss_pred HHHHHHHHHCC
T ss_conf 89999988617
No 159
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.66 E-value=0.00054 Score=51.78 Aligned_cols=183 Identities=16% Similarity=0.221 Sum_probs=103.1
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC-C--CCHHHHHHHC
Q ss_conf 565610929999999999982889816631179898889999999999817799886431210126-7--8867999967
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD-P--CSPFVKQMAS 86 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~-~--~~~~~~~i~~ 86 (347)
-|.-++||+.....|.-....-++.. .|+.|++|+||+|+|+++|. ||-.-..-.+---.|.++ + -+..|+.-..
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~igg-vLI~G~kGtaKSt~~Rala~-LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~ 92 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQIGG-ALIAGEKGTAKSTLARALAD-LLPEIEVVIGCPFNCDPDDPEEMCDECRAKGD 92 (423)
T ss_pred CHHHHCCCHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHH-HCCCCCEECCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 65654375377788765302631042-68766887527799999998-67963321688788998870555199986202
Q ss_pred CCCCCEEEECCCCHHHC--------CCCCCCCCHHHHHHHHH-HCCCCC---CCCCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 89875453001000101--------34212323788755443-102221---1112103532205542400014567776
Q gi|254780217|r 87 HALHDFLYLSYSLNPKT--------GKWRTVITVDEIRRIRY-FLSLTA---NTGYWRVIMIDPVDGMNRNAANALLKSL 154 (347)
Q Consensus 87 ~~hpd~~~i~~~~~~k~--------~~~~~~I~vd~IR~l~~-~~~~~~---~~~~~Ki~IId~ad~ln~~AaNALLK~L 154 (347)
.-.++ .....+.+.- .+.=.+|.++ +.+.. --..+| ..+.+=|+-||++-.+...-+|+||-.+
T Consensus 93 -e~~~~-~~~~r~v~~v~lPl~ateDrvvGslDi~--ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~a 168 (423)
T COG1239 93 -ELEWL-PREKRKVPFVALPLGATEDRLVGSLDIE--KALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVA 168 (423)
T ss_pred -CCCCC-CCCCEECCEECCCCCCCHHHHCCCCCHH--HHHHCCCCCCCCCCHHHCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf -32445-4221003122388763043300456799--9972683002775110035887987233435189999999999
Q ss_pred HH-------------CCCCCCEEEE-ECCCC--CCCHHHHCE-EEEEECCCCCHHH-HHHHHHH
Q ss_conf 63-------------0343416765-04433--573025203-6988647999899-9999997
Q gi|254780217|r 155 EE-------------PPQKVLFILI-SHASP--TILSTIRSR-CLSIKFNSLSENN-LYKALEQ 200 (347)
Q Consensus 155 EE-------------Pp~~t~fiLi-t~~~~--~il~TI~SR-c~~i~f~~l~~~~-~~~~L~~ 200 (347)
+| -|. -|+|| |-||+ .|-|.++-| -..+...++..-+ -.+++.+
T Consensus 169 aeG~n~vereGisi~hpa--~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 169 AEGVNDVEREGISIRHPA--RFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRR 230 (423)
T ss_pred HHCCCEEEECCEEECCCC--CEEEEEECCCCCCCCCHHHHHHHCCEEECCCCCCHHHHHHHHHH
T ss_conf 717740335750313676--17999644854466324667541115623478878888999999
No 160
>KOG2170 consensus
Probab=97.65 E-value=0.00043 Score=52.57 Aligned_cols=135 Identities=19% Similarity=0.232 Sum_probs=90.3
Q ss_pred HHHCCHHHHHHHHHHHHHC------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 5610929999999999982------8898166311798988899999999998177998864312101267886799996
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCS------GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA 85 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (347)
..++||.-+++...+++++ -+=|=.+=|||++|+||.-.|..+|..+.-..-.+. .+-.-+.
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~------------~V~~fva 149 (344)
T KOG2170 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP------------FVHHFVA 149 (344)
T ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCH------------HHHHHHH
T ss_conf 9863208799999999999862899998758983089987564899999999875112562------------6887655
Q ss_pred CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC------
Q ss_conf 78987545300100010134212323788755-44310222111121035322055424000145677766303------
Q gi|254780217|r 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP------ 158 (347)
Q Consensus 86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~-l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp------ 158 (347)
....|+-- .|++-|+ |.+++.-+-..-++-++|.||+|.|...--.+|--.|+-.|
T Consensus 150 t~hFP~~~-----------------~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~ 212 (344)
T KOG2170 150 TLHFPHAS-----------------KIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVD 212 (344)
T ss_pred HCCCCCHH-----------------HHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 41599767-----------------8999999999999999985577548731054358769998766630463213554
Q ss_pred -CCCCEEEEECCCCCCCH
Q ss_conf -43416765044335730
Q gi|254780217|r 159 -QKVLFILISHASPTILS 175 (347)
Q Consensus 159 -~~t~fiLit~~~~~il~ 175 (347)
.+++||++++--...++
T Consensus 213 frkaIFIfLSN~gg~eI~ 230 (344)
T KOG2170 213 FRKAIFIFLSNAGGSEIA 230 (344)
T ss_pred CCCEEEEEECCCCCHHHH
T ss_conf 551489997178614779
No 161
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=2.6e-05 Score=62.46 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=35.0
Q ss_pred HHHCCHHHHHHHHHHHH----H----CCC-----C-CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 56109299999999999----8----288-----9-816631179898889999999999817
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYY----C----SGR-----M-HHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~----~----~~~-----l-~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
+-|+||+.+++.|.-+. + .+. + -..+|+.||-|+||+.+|..+|+.|.-
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnV 123 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNV 123 (408)
T ss_pred HHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 243262543103466410688998604887763532031799888997577999999998489
No 162
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=97.63 E-value=0.0012 Score=48.91 Aligned_cols=207 Identities=14% Similarity=0.138 Sum_probs=104.5
Q ss_pred HHHCCHHHHHHHHH---HHH---HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 56109299999999---999---828898166311798988899999999998177998864312101267886799996
Q gi|254780217|r 12 QRLFGHEDIEKFLS---QYY---CSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA 85 (347)
Q Consensus 12 ~~i~G~~~~~~~L~---~~~---~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (347)
+.-+|+..+.+.|. ..+ ...|+|. +|++|+.|.||++.+..|++.-. ...+.....| |+. .+.
T Consensus 34 ~rWIgY~~A~~~L~~Le~Ll~~P~~~Rmp~-lLlvGdsnnGKT~Iv~rF~~~hp---~~~d~~~~~~------PVl-~vq 102 (302)
T pfam05621 34 DRWIGYPRAVEALNRLEALYAWPNKQRMPN-LLLVGPTNNGKSMIVEKFRRAHP---AGSDADQEHI------PVL-VVQ 102 (302)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCC-EEEEECCCCCHHHHHHHHHHHCC---CCCCCCCCCC------EEE-EEE
T ss_conf 853277899999999999984686468875-58870798878999999999679---9878666702------189-997
Q ss_pred CCCCCCEEEECCCC-HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH---HHHHHHHHHHHHCCCCC
Q ss_conf 78987545300100-010134212323788755443102221111210353220554240---00145677766303434
Q gi|254780217|r 86 SHALHDFLYLSYSL-NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR---NAANALLKSLEEPPQKV 161 (347)
Q Consensus 86 ~~~hpd~~~i~~~~-~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~---~AaNALLK~LEEPp~~t 161 (347)
.-..||.-.+-... ..-+-..+..-++.+-+...-.+-. .-+-|++|||++|.+=. ..|.++|-.|---....
T Consensus 103 ~P~~p~~~~lY~~IL~~l~aP~~~~~~~~~~~~~~~~ll~---~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Nel 179 (302)
T pfam05621 103 MPSEPSVIRFYVALLAAMGAPLRPRPRLPEMEQLALALLR---KVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNEL 179 (302)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH---HCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 6999886899999999837877888778999999999999---7498789985436560486889999999999986365
Q ss_pred CE--EEE-ECCCCCC---CHHHHCEEEEEECCCCCHHH-HHHHHHHH---------CCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 16--765-0443357---30252036988647999899-99999972---------788896789999997598978999
Q gi|254780217|r 162 LF--ILI-SHASPTI---LSTIRSRCLSIKFNSLSENN-LYKALEQL---------KIMGWDSKRDFVKIAAYGSVARAI 225 (347)
Q Consensus 162 ~f--iLi-t~~~~~i---l~TI~SRc~~i~f~~l~~~~-~~~~L~~~---------~~~~~~~~~~~~~~~s~Gs~~~A~ 225 (347)
.+ +++ |...-.. -|-+.||...+.+++-..++ ....|... ..-...+....+...|.|.+|...
T Consensus 180 ~IpiV~vGt~eA~~ai~tD~QlasRF~~~~Lp~W~~d~ef~~LL~sfe~~LPL~~~S~L~~~~~a~~I~~~SeG~iGei~ 259 (302)
T pfam05621 180 RIPLVGVGTRDAYLAIRSDDQLENRFEPMLLPPWEANDDCCSLLASFAASLPLRRPSPIATLDMARYLLTRSEGTIGELA 259 (302)
T ss_pred CCCEEEECCHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 87869953199999970688888505861168888980899999999986888777688889999999998599287999
Q ss_pred HHHCCCH
Q ss_conf 8814577
Q gi|254780217|r 226 KILHYDC 232 (347)
Q Consensus 226 ~ll~~~~ 232 (347)
.+++...
T Consensus 260 ~Ll~~aA 266 (302)
T pfam05621 260 HLLMAAA 266 (302)
T ss_pred HHHHHHH
T ss_conf 9999999
No 163
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=8.4e-05 Score=58.30 Aligned_cols=46 Identities=33% Similarity=0.486 Sum_probs=40.0
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 56561092999999999998288981663117989888999999999981
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
-|.||+||+.+++.|--+...| |.+||+||||+||+.+|.++.. ||
T Consensus 177 D~~DV~GQ~~AKrAleiAAAGg---HnLl~~GpPGtGKTmla~Rl~~-lL 222 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAAAGG---HNLLLVGPPGTGKTMLASRLPG-LL 222 (490)
T ss_pred CHHHHCCCHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHC-CC
T ss_conf 6666438499999999998438---8678756998865676423102-59
No 164
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=97.58 E-value=0.00022 Score=54.90 Aligned_cols=184 Identities=17% Similarity=0.151 Sum_probs=112.6
Q ss_pred CHHHHCCHHHHHHHHHHHHHCC------------CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC
Q ss_conf 5656109299999999999828------------8981663117989888999999999981779988643121012678
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSG------------RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~------------~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~ 77 (347)
+|.+|=|-+.+.+.+..++.-- .-|-+.|+|||||+|||.+|.++|....... -.
T Consensus 120 ~y~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PPKGvLLyGPPGtGKTLlAKAvA~et~ATF-------Ir------ 186 (364)
T TIGR01242 120 SYEDIGGLEKQIREIREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-------IR------ 186 (364)
T ss_pred EEECCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEE-------EE------
T ss_conf 34026787899999988873468883167762889898657007579768899998631455126-------88------
Q ss_pred CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-----------HHH
Q ss_conf 867999967898754530010001013421232378875544310222111121035322055424-----------000
Q gi|254780217|r 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-----------RNA 146 (347)
Q Consensus 78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-----------~~A 146 (347)
++..+.-.| -|+ |-.|-+.+-|.+.- +-.--|++||++|... .+-
T Consensus 187 ----------------vVgSElV~K------yIG-EGArLV~~~F~LAk-EKaPsIiFIDEiDAiaakR~~~~TsGdREV 242 (364)
T TIGR01242 187 ----------------VVGSELVRK------YIG-EGARLVREVFELAK-EKAPSIIFIDEIDAIAAKRVDSSTSGDREV 242 (364)
T ss_pred ----------------EEHHHHHHH------HHC-CHHHHHHHHHHHHH-CCCCCEEEEECHHHHHHHHCCCCCCCCHHH
T ss_conf ----------------604444444------413-31689999999853-069816861013335432114677873157
Q ss_pred HHHHHHHHH-----HCCCCCCEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHHHH---CCCCCHHHHHHHHH
Q ss_conf 145677766-----303434167650443357302520--36-98864799989999999972---78889678999999
Q gi|254780217|r 147 ANALLKSLE-----EPPQKVLFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALEQL---KIMGWDSKRDFVKI 215 (347)
Q Consensus 147 aNALLK~LE-----EPp~~t~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~~~---~~~~~~~~~~~~~~ 215 (347)
|-.|+-.|= +|-.|+.+|=.||.++-|-|.|+- |. +.+-++-|+.+=-.++|+-. -.-..+-.+..++.
T Consensus 243 ~RTlmQLLAElDGFd~rg~VkviaATNR~DilDPA~LRPGRFDR~IEVPlP~~~GR~eIlkiHTr~~~la~dVdl~~~A~ 322 (364)
T TIGR01242 243 QRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPAILRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAK 322 (364)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 88999999752488876761688720762020432148886132573169783220566555210000123568799998
Q ss_pred HCCCCHHHHHHHHCC
Q ss_conf 759897899988145
Q gi|254780217|r 216 AAYGSVARAIKILHY 230 (347)
Q Consensus 216 ~s~Gs~~~A~~ll~~ 230 (347)
+++|..|.-++-+-.
T Consensus 323 ~TeG~sGAdlKAi~t 337 (364)
T TIGR01242 323 LTEGASGADLKAICT 337 (364)
T ss_pred HHCCCCCCHHHHHHH
T ss_conf 747886630423434
No 165
>KOG0737 consensus
Probab=97.55 E-value=0.0012 Score=49.09 Aligned_cols=191 Identities=15% Similarity=0.080 Sum_probs=101.0
Q ss_pred CHHHHCCHHHHHHHHHHHHH----------CCC---CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC--CHHHCCC
Q ss_conf 56561092999999999998----------288---98166311798988899999999998177998864--3121012
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYC----------SGR---MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA--PVRMCNP 74 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~----------~~~---l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~--~~~~~~~ 74 (347)
+|++|=|-+.+++.|....- .++ -|-++|++||||+||+.+|.+.|+.--+....-.. ..+..-.
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfg 169 (386)
T KOG0737 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFG 169 (386)
T ss_pred EHHHCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHH
T ss_conf 02413352899999998775201246664145314686430511899821889999999872797100013655326677
Q ss_pred CCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 67886799996789875453001000101342123237887554431022211112103532205542400014567776
Q gi|254780217|r 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL 154 (347)
Q Consensus 75 ~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~L 154 (347)
..-+...+ ++.+. .+-....|-||+|-....+=..+-++ ..=+.-++-|.. .. +..
T Consensus 170 ----E~eKlv~A-----vFslA------sKl~P~iIFIDEvds~L~~R~s~dHE----a~a~mK~eFM~~--WD---Gl~ 225 (386)
T KOG0737 170 ----EAQKLVKA-----VFSLA------SKLQPSIIFIDEVDSFLGQRRSTDHE----ATAMMKNEFMAL--WD---GLS 225 (386)
T ss_pred ----HHHHHHHH-----HHHHH------HHCCCCEEEHHHHHHHHHHCCCCHHH----HHHHHHHHHHHH--HC---CCC
T ss_conf ----78889999-----98206------53486156566588898640464279----999999999998--61---646
Q ss_pred HHCCCCCCEEEEECCCCCCCHHHHCE-EEEEECCCCCHHHHHHHHHHH----CCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 63034341676504433573025203-698864799989999999972----788896789999997598978999
Q gi|254780217|r 155 EEPPQKVLFILISHASPTILSTIRSR-CLSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGSVARAI 225 (347)
Q Consensus 155 EEPp~~t~fiLit~~~~~il~TI~SR-c~~i~f~~l~~~~~~~~L~~~----~~~~~~~~~~~~~~~s~Gs~~~A~ 225 (347)
-.+....+.+=.||.|..+-..|.+| |++|.+.-|+..+-.++|+-. ..+ ++-+...++..++|=-|.-+
T Consensus 226 s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDL 300 (386)
T KOG0737 226 SKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDL 300 (386)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHH
T ss_conf 7887159997079998437899998476436537984444999999994243468-77698888876089867789
No 166
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=97.51 E-value=0.00026 Score=54.35 Aligned_cols=149 Identities=18% Similarity=0.250 Sum_probs=75.0
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC---HH---HHHHHCCCCCCEEEECCCCHHHCCCCCCCC
Q ss_conf 631179898889999999999817799886431210126788---67---999967898754530010001013421232
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS---PF---VKQMASHALHDFLYLSYSLNPKTGKWRTVI 110 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~---~~---~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I 110 (347)
++++|+||+||+|+...++..+-... ...||........ +. +.-+.+|..--+-.++.....+-++. .+
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~~~---~~v~GF~T~evre~g~R~GF~iv~l~~g~~~~la~~~~~~~~~vGky--~v 76 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKSEG---VKVGGFYTPEVREGGRRIGFDIVDLASGERGPLARVGGVSGPRVGKY--VV 76 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEEECCEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCC--EE
T ss_conf 89978999889999999999998679---70748993021258937899999904782677444068877545771--66
Q ss_pred CHHHHHHH-HHHCCCCCCCCCCHHHHHHHHHHCCHHH---HHHHHHHHHHCCCCCCEEEEECC--CCCCCHHHHCE--EE
Q ss_conf 37887554-4310222111121035322055424000---14567776630343416765044--33573025203--69
Q gi|254780217|r 111 TVDEIRRI-RYFLSLTANTGYWRVIMIDPVDGMNRNA---ANALLKSLEEPPQKVLFILISHA--SPTILSTIRSR--CL 182 (347)
Q Consensus 111 ~vd~IR~l-~~~~~~~~~~~~~Ki~IId~ad~ln~~A---aNALLK~LEEPp~~t~fiLit~~--~~~il~TI~SR--c~ 182 (347)
.++..-.+ ..-+... .....++|||++-.|-..| ..++.+.|+- ++..+.+-+. ...++..|+.| +.
T Consensus 77 ~~~~fe~~~~~~L~~a--~~~~dlivIDEIG~mEl~s~~F~~~v~~~l~~---~~~vl~ti~~~~~~~~v~~i~~~~d~~ 151 (168)
T pfam03266 77 NLEEFEEIALPALRRA--LEEADLIIIDEIGPMELKSPKFREAIEEVLSS---NKPVLAVVHRRSDSPLVERIRRRPDVK 151 (168)
T ss_pred CHHHHHHHHHHHHHHC--CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEEECCCCHHHHHHHCCCCCE
T ss_conf 6899999999999840--66898999976314533149999999999669---997999997258983899974179938
Q ss_pred EEECCCCCHHHHH
Q ss_conf 8864799989999
Q gi|254780217|r 183 SIKFNSLSENNLY 195 (347)
Q Consensus 183 ~i~f~~l~~~~~~ 195 (347)
.+.+.+-+.+.+.
T Consensus 152 i~~vt~~NRd~l~ 164 (168)
T pfam03266 152 IFVVTEENRDALP 164 (168)
T ss_pred EEEECHHHHHHHH
T ss_conf 9997868866446
No 167
>KOG0732 consensus
Probab=97.50 E-value=0.0028 Score=46.09 Aligned_cols=189 Identities=16% Similarity=0.100 Sum_probs=107.6
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHCC------------CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC
Q ss_conf 875656109299999999999828------------89816631179898889999999999817799886431210126
Q gi|254780217|r 8 PVYNQRLFGHEDIEKFLSQYYCSG------------RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD 75 (347)
Q Consensus 8 p~~~~~i~G~~~~~~~L~~~~~~~------------~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~ 75 (347)
=..|++|-|-++.++.|++..-.- .-|.+.|||||||.||+..|+++|...-... .....
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~--~kisf------ 332 (1080)
T KOG0732 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN--RKISF------ 332 (1080)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCC--CCCCH------
T ss_conf 3686333457888999999887676405676412668986323028998725688886665405411--02024------
Q ss_pred CCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-----------H
Q ss_conf 78867999967898754530010001013421232378875544310222111121035322055424-----------0
Q gi|254780217|r 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-----------R 144 (347)
Q Consensus 76 ~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-----------~ 144 (347)
.+ -.+.|.+-. |.... =.|.|.+=..+..+ ..-|+..|++|-+- .
T Consensus 333 -------fm--rkgaD~lsk---wvgEa--------ERqlrllFeeA~k~----qPSIIffdeIdGlapvrSskqEqih~ 388 (1080)
T KOG0732 333 -------FM--RKGADCLSK---WVGEA--------ERQLRLLFEEAQKT----QPSIIFFDEIDGLAPVRSSKQEQIHA 388 (1080)
T ss_pred -------HH--HCCCHHHCC---CCCCH--------HHHHHHHHHHHHCC----CCEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf -------43--148443325---44757--------78899889887444----85177305556646565366777445
Q ss_pred HHHHHHHHHHHHCCCCCCEE--EEECCCCCCCHHHHCEE---EEEECCCCCHHHHHHHHHHH----CCCCCHHHHHHHHH
Q ss_conf 00145677766303434167--65044335730252036---98864799989999999972----78889678999999
Q gi|254780217|r 145 NAANALLKSLEEPPQKVLFI--LISHASPTILSTIRSRC---LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKI 215 (347)
Q Consensus 145 ~AaNALLK~LEEPp~~t~fi--Lit~~~~~il~TI~SRc---~~i~f~~l~~~~~~~~L~~~----~~~~~~~~~~~~~~ 215 (347)
+---.||-.|---+...-.+ =.|+.++.+-|..|-+- +.|+|+-++.+.-.+++.-. ..........+++.
T Consensus 389 SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~ 468 (1080)
T KOG0732 389 SIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAE 468 (1080)
T ss_pred HHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 67777887604777778658971567833246544288666525750378667888999875157778877789999988
Q ss_pred HCCCCHHHHHHHH
Q ss_conf 7598978999881
Q gi|254780217|r 216 AAYGSVARAIKIL 228 (347)
Q Consensus 216 ~s~Gs~~~A~~ll 228 (347)
.+.|=.|.-++.+
T Consensus 469 ~t~gy~gaDlkaL 481 (1080)
T KOG0732 469 ETSGYGGADLKAL 481 (1080)
T ss_pred HCCCCCHHHHHHH
T ss_conf 6234005789988
No 168
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=97.48 E-value=0.0028 Score=46.06 Aligned_cols=182 Identities=18% Similarity=0.124 Sum_probs=110.4
Q ss_pred CCHHHHCCHHHHHHHHHHHHHC------------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 7565610929999999999982------------8898166311798988899999999998177998864312101267
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCS------------GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~------------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
..|+++=|-+++++.|..+..- -+.|.+.|++||||+||+.+|.+.|..--.+.-
T Consensus 538 v~W~diGGlee~kq~lreaveWPlk~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es~anfi------------- 604 (980)
T TIGR01243 538 VKWEDIGGLEEVKQELREAVEWPLKAPEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFI------------- 604 (980)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEE-------------
T ss_conf 1100146678999999877523444058998607889973487468986168888877401456467-------------
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-------------
Q ss_conf 8867999967898754530010001013421232378875544310222111121035322055424-------------
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN------------- 143 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln------------- 143 (347)
+-.-|.++ ..|-.. +-..||++-+... .+.--|+++|++|.+.
T Consensus 605 ---------~v~GPe~l---skWvGe--------se~~ir~if~~ar----q~aP~~~f~deidaiaP~rG~~~~~~~vt 660 (980)
T TIGR01243 605 ---------AVRGPEIL---SKWVGE--------SEKAIREIFRKAR----QAAPAIIFFDEIDAIAPARGASLDEKGVT 660 (980)
T ss_pred ---------EECCCHHH---HHHHCH--------HHHHHHHHHHHHH----HCCCEEEEEECHHHHCCCCCCCCCCCCHH
T ss_conf ---------74073122---344032--------4799999999864----12873787302111054124421001026
Q ss_pred HHHHHHHHHHHH--HCCCCCCEEEEECCCCCCCHHHHC--EEEE-EECCCCCHHHHHHHHHH---HCCCCCHHHHHHHHH
Q ss_conf 000145677766--303434167650443357302520--3698-86479998999999997---278889678999999
Q gi|254780217|r 144 RNAANALLKSLE--EPPQKVLFILISHASPTILSTIRS--RCLS-IKFNSLSENNLYKALEQ---LKIMGWDSKRDFVKI 215 (347)
Q Consensus 144 ~~AaNALLK~LE--EPp~~t~fiLit~~~~~il~TI~S--Rc~~-i~f~~l~~~~~~~~L~~---~~~~~~~~~~~~~~~ 215 (347)
..--|-||--|. +++++++.|-.|+.|+-+-|.+.- |.-+ +.+++|+++.-.++++- .-....+-.+..++.
T Consensus 661 d~~~nqll~e~dG~~~~~~vvvi~atnrPdi~dPallrPGr~dr~i~vP~Pd~~ar~~ifk~ht~~~~l~~dv~l~~la~ 740 (980)
T TIGR01243 661 DRIVNQLLTELDGLEELSDVVVIAATNRPDILDPALLRPGRLDRLILVPAPDEEARLEIFKIHTRSMPLAEDVDLEELAK 740 (980)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 89999999864044343665898615887423610048874121686059855676767655311135301343899986
Q ss_pred HCCCCHHHHHHH
Q ss_conf 759897899988
Q gi|254780217|r 216 AAYGSVARAIKI 227 (347)
Q Consensus 216 ~s~Gs~~~A~~l 227 (347)
.+.|--|.-+..
T Consensus 741 ~teGytGadi~a 752 (980)
T TIGR01243 741 KTEGYTGADIEA 752 (980)
T ss_pred HHCCCCCHHHHH
T ss_conf 516876322999
No 169
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.48 E-value=0.00048 Score=52.22 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=69.2
Q ss_pred HHHHCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH--HCCCCCCCHHHHHHHCC
Q ss_conf 65610929999999999982-8898166311798988899999999998177998864312--10126788679999678
Q gi|254780217|r 11 NQRLFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR--MCNPDPCSPFVKQMASH 87 (347)
Q Consensus 11 ~~~i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~--~~~~~~~~~~~~~i~~~ 87 (347)
-+++||+-.+.+.+...+.. .+-...+|++|.+|+||..+|+++-. ...-...|.- .|..-+. ..+++
T Consensus 5 ~~~liG~S~~m~~v~~~~~~~A~~~~pVLI~GE~GtGK~~~Ar~IH~----~S~r~~~pfi~v~C~~l~~----~~~e~- 75 (325)
T PRK11608 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHY----LSSRWQGPFISLNCAALNE----NLLDS- 75 (325)
T ss_pred CCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH----CCCCCCCCCEEEECCCCCH----HHHHH-
T ss_conf 89985899999999999999968899989889898379999999996----5886799977887798997----78899-
Q ss_pred CCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC----------
Q ss_conf 9875453001000101342123237887554431022211112103532205542400014567776630----------
Q gi|254780217|r 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP---------- 157 (347)
Q Consensus 88 ~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP---------- 157 (347)
..+.. ++ +.. .+.. ..-...+.. ..|+ .+++++++.|....|..||+.||+-
T Consensus 76 -----~LFG~---~~-g~~---~~~~--~~~~g~le~--a~gG--TL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~ 137 (325)
T PRK11608 76 -----ELFGH---EA-GAF---TGAQ--KRHPGRFER--ADGG--TLFLDELATAPMLVQEKLLRVIEYGELERVGGSQP 137 (325)
T ss_pred -----HHCCC---CC-CCC---CCCC--CCCCCHHHC--CCCC--EEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf -----87277---55-676---7753--246873435--6898--69973745479999999999986490885799876
Q ss_pred -CCCCCEEEEECC
Q ss_conf -343416765044
Q gi|254780217|r 158 -PQKVLFILISHA 169 (347)
Q Consensus 158 -p~~t~fiLit~~ 169 (347)
+-++.+|-+|+.
T Consensus 138 ~~~~~RiIa~t~~ 150 (325)
T PRK11608 138 LQVNVRLVCATNA 150 (325)
T ss_pred CCCCEEEEECCCH
T ss_conf 6564688713322
No 170
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.47 E-value=0.00085 Score=50.22 Aligned_cols=127 Identities=17% Similarity=0.240 Sum_probs=73.7
Q ss_pred CCHHHHCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH--CCCCCCCHHHHHHH
Q ss_conf 7565610929999999999982-88981663117989888999999999981779988643121--01267886799996
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM--CNPDPCSPFVKQMA 85 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~--~~~~~~~~~~~~i~ 85 (347)
.+|++|+|+-.+.+.+....+. .......|++|..|+||..+|+++=. ...-...|.-. |..-+.. .++
T Consensus 201 ~~F~~iig~S~~m~~v~~~a~r~A~~d~pVLI~GEsGTGKellAraIH~----~S~R~~~pFv~vnC~alp~~----l~e 272 (513)
T PRK10820 201 SAFSQIVAVSPKMKHVVEQARKLAMLSAPLLITGDTGTGKDLFAYACHL----ASPRAKKPYLALNCASIPED----AVE 272 (513)
T ss_pred CCHHHHEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH----CCCCCCCCCEEEECCCCCHH----HHH
T ss_conf 6877751089999999999999859899889989898249999999996----68878998268889989967----899
Q ss_pred CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC--------
Q ss_conf 789875453001000101342123237887554431022211112103532205542400014567776630--------
Q gi|254780217|r 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP-------- 157 (347)
Q Consensus 86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP-------- 157 (347)
+. .+......+. ..+. ...|+ .+++|+++.|..+.|-.||+.|||-
T Consensus 273 se------LFG~a~~~~~----------------G~fe--~A~gG--TLfLdEI~~l~~~~Q~kLLr~Lq~~~~~rvG~~ 326 (513)
T PRK10820 273 SE------LFGHAPEGKK----------------GFFE--QANGG--SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGED 326 (513)
T ss_pred HH------HCCCCCCCCC----------------CCEE--ECCCC--EEEEECHHHCCHHHHHHHHHHHHCCEEEECCCC
T ss_conf 98------6387666889----------------7557--85898--899978365999999999999868979965998
Q ss_pred ---CCCCCEEEEECC
Q ss_conf ---343416765044
Q gi|254780217|r 158 ---PQKVLFILISHA 169 (347)
Q Consensus 158 ---p~~t~fiLit~~ 169 (347)
|-++.+|-.|+.
T Consensus 327 ~~~~~dvRiIaaT~~ 341 (513)
T PRK10820 327 HEVHVDVRVICATQK 341 (513)
T ss_pred CEEEEEEEEEECCCH
T ss_conf 535677899962653
No 171
>KOG0735 consensus
Probab=97.47 E-value=0.0016 Score=47.97 Aligned_cols=157 Identities=17% Similarity=0.116 Sum_probs=83.9
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCC
Q ss_conf 88981663117989888999999999981779988643121012678867999967898754530010001013421232
Q gi|254780217|r 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI 110 (347)
Q Consensus 31 ~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I 110 (347)
.-.|.++|++||+|+||+.+|.+++.+.-- .. . | -+.+++-+.- . + =
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k-~~---~-~---------------------hv~~v~Cs~l----~-~--~ 474 (952)
T KOG0735 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSK-DL---I-A---------------------HVEIVSCSTL----D-G--S 474 (952)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHCC-CC---C-E---------------------EEEEEECHHC----C-C--H
T ss_conf 334661898679987776999999987515-65---0-6---------------------9999752210----4-2--0
Q ss_pred CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----HH-----H---HHHH----HHHHHCCCCCCEEEEECCCCCC
Q ss_conf 3788755443102221111210353220554240-----00-----1---4567----7766303434167650443357
Q gi|254780217|r 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-----NA-----A---NALL----KSLEEPPQKVLFILISHASPTI 173 (347)
Q Consensus 111 ~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----~A-----a---NALL----K~LEEPp~~t~fiLit~~~~~i 173 (347)
+.+.|....+-.-.....-.--|+++|+.|.+-. ++ . +++| |.-=+-.....||........+
T Consensus 475 ~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl 554 (952)
T KOG0735 475 SLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTL 554 (952)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHC
T ss_conf 48999999999999988637808997050354056844477302899999999999999987068579999851434203
Q ss_pred CHHHHCEE---EEEECCCCCHHHHHHHHHHH----CCCCCHHHHHHHHHHCCCC
Q ss_conf 30252036---98864799989999999972----7888967899999975989
Q gi|254780217|r 174 LSTIRSRC---LSIKFNSLSENNLYKALEQL----KIMGWDSKRDFVKIAAYGS 220 (347)
Q Consensus 174 l~TI~SRc---~~i~f~~l~~~~~~~~L~~~----~~~~~~~~~~~~~~~s~Gs 220 (347)
.|++-|-- ..+++++|...+-.++|... ........+++++..++|=
T Consensus 555 ~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735 555 NPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGY 608 (952)
T ss_pred CHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 853347631478881589235679999999997553454567899888760784
No 172
>KOG0736 consensus
Probab=97.47 E-value=0.0056 Score=43.62 Aligned_cols=188 Identities=16% Similarity=0.136 Sum_probs=97.7
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCC--------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH-
Q ss_conf 56561092999999999998288--------981663117989888999999999981779988643121012678867-
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGR--------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF- 80 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~--------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~- 80 (347)
+|-...+++..+..+.+.+.... +.-+.|++|++|+||+++.+.+|+.+=-+ .-..+|.+..+...+..
T Consensus 399 n~~~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h--~~evdc~el~~~s~~~~e 476 (953)
T KOG0736 399 NSLSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH--LLEVDCYELVAESASHTE 476 (953)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC--EEECCHHHHHHCCCCHHH
T ss_conf 158876602799999998486558530013355379986799987579999999983872--570138988643633137
Q ss_pred HHH-----HHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-HHHHHHHHHH
Q ss_conf 999-----9678987545300100010134212323788755443102221111210353220554240-0014567776
Q gi|254780217|r 81 VKQ-----MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-NAANALLKSL 154 (347)
Q Consensus 81 ~~~-----i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-~AaNALLK~L 154 (347)
.++ ...-..|-++++.. . ..++||+ +| .+.... ++-+-+|- +
T Consensus 477 tkl~~~f~~a~~~~pavifl~~-~--------dvl~id~-------------dg---------ged~rl~~~i~~~ls-~ 524 (953)
T KOG0736 477 TKLQAIFSRARRCSPAVLFLRN-L--------DVLGIDQ-------------DG---------GEDARLLKVIRHLLS-N 524 (953)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC-C--------CEEEECC-------------CC---------CHHHHHHHHHHHHHH-C
T ss_conf 8999999987526862898722-4--------2455337-------------77---------442779999999972-0
Q ss_pred HHCC---CCCCEEEEECCCCCCCHHHHCEE-EEEECCCCCHHHHHHHHHHHC----CCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 6303---43416765044335730252036-988647999899999999727----888967899999975989789998
Q gi|254780217|r 155 EEPP---QKVLFILISHASPTILSTIRSRC-LSIKFNSLSENNLYKALEQLK----IMGWDSKRDFVKIAAYGSVARAIK 226 (347)
Q Consensus 155 EEPp---~~t~fiLit~~~~~il~TI~SRc-~~i~f~~l~~~~~~~~L~~~~----~~~~~~~~~~~~~~s~Gs~~~A~~ 226 (347)
|.++ ..++|+-.|++.+.++++|+|-. ..+.+..+++++-.+||+-.. .+........+...+.-+++....
T Consensus 525 e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~ 604 (953)
T KOG0736 525 EDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEA 604 (953)
T ss_pred CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 23567799659999625302398789875265213778887889999999983065235778789998658987777997
Q ss_pred HHCCC
Q ss_conf 81457
Q gi|254780217|r 227 ILHYD 231 (347)
Q Consensus 227 ll~~~ 231 (347)
+....
T Consensus 605 l~~~~ 609 (953)
T KOG0736 605 LVAHS 609 (953)
T ss_pred HHCCC
T ss_conf 71475
No 173
>KOG0741 consensus
Probab=97.47 E-value=0.00019 Score=55.39 Aligned_cols=132 Identities=17% Similarity=0.301 Sum_probs=73.9
Q ss_pred HHHHHHHCCCCC------------EEEEECCCCCCCHHHHHHHHHHHHHCC-CCCCCCCHHHCCCCCCCHHHHHHHCCCC
Q ss_conf 999999828898------------166311798988899999999998177-9988643121012678867999967898
Q gi|254780217|r 23 FLSQYYCSGRMH------------HALLFEGEQGIGKATLGFRYAGHVLQN-PDFSKAPVRMCNPDPCSPFVKQMASHAL 89 (347)
Q Consensus 23 ~L~~~~~~~~l~------------ha~Lf~Gp~GiGK~~~A~~~A~~llc~-~~~~~~~~~~~~~~~~~~~~~~i~~~~h 89 (347)
.+.+++.+.-+| -++|+|||||+||+.+|+.+.+.|+.. +..-++|.-.. +.-..+
T Consensus 233 IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~----------KYVGeS- 301 (744)
T KOG0741 233 IFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN----------KYVGES- 301 (744)
T ss_pred HHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH----------HHHCCC-
T ss_conf 999987763299889987195112357887799987018999987874579986347578898----------760630-
Q ss_pred CCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCC----CCCCCCCCHHHHHHHHHHCC-------------HHHHHHHHH
Q ss_conf 7545300100010134212323788755443102----22111121035322055424-------------000145677
Q gi|254780217|r 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS----LTANTGYWRVIMIDPVDGMN-------------RNAANALLK 152 (347)
Q Consensus 90 pd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~----~~~~~~~~Ki~IId~ad~ln-------------~~AaNALLK 152 (347)
=+.||.|-.... ....+++--|+|.|++|..- .+--|-||-
T Consensus 302 ----------------------E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLs 359 (744)
T KOG0741 302 ----------------------EENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLS 359 (744)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf ----------------------7889999875799998437667725999634679997448878988631899999998
Q ss_pred HHH--HCCCCCCEEEEECCCCCC-----------------CHHHHCEEEEEECC
Q ss_conf 766--303434167650443357-----------------30252036988647
Q gi|254780217|r 153 SLE--EPPQKVLFILISHASPTI-----------------LSTIRSRCLSIKFN 187 (347)
Q Consensus 153 ~LE--EPp~~t~fiLit~~~~~i-----------------l~TI~SRc~~i~f~ 187 (347)
-+. |-=.|.+.|=-|+..+-| ||-=.+|.|.++++
T Consensus 360 KmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IH 413 (744)
T KOG0741 360 KMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIH 413 (744)
T ss_pred HCCCHHHHHCEEEEECCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEHH
T ss_conf 532287661678994047366678875588716999998468876727888714
No 174
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.41 E-value=0.00023 Score=54.78 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=70.0
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHH--CC
Q ss_conf 5656109299999999999828898166311798988899999999998177998864312101267886799996--78
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA--SH 87 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~--~~ 87 (347)
-|++|.||+.+++-|.-+... . |.+|+.||||+||+.+|.++.. ||-. .+....-+ ...|. +|
T Consensus 189 D~~dv~Gq~~akraleIAAAG--g-HnlLl~GpPG~GKTMlA~rlp~-ILPp--Lt~~e~lE---------v~~I~Svag 253 (506)
T PRK09862 189 DLSDVVGQEQGKRGLEITAAG--G-HNLLLIGPPGTGKTMLASRING-LLPD--LSNEEALE---------SAAILSLVN 253 (506)
T ss_pred CHHHHCCCHHHHHHHHHHHCC--C-CCEEEECCCCCCHHHHHHHHHH-CCCC--CCHHHHHH---------HHHHHHHHC
T ss_conf 756536979999999997446--8-8659876999459899977512-3899--89899999---------999998718
Q ss_pred CCCCEEEE-CCCCHHHCCCCCCCCCHHHHHHHHHH-CCCCCC---CCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 98754530-01000101342123237887554431-022211---11210353220554240001456777663
Q gi|254780217|r 88 ALHDFLYL-SYSLNPKTGKWRTVITVDEIRRIRYF-LSLTAN---TGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 88 ~hpd~~~i-~~~~~~k~~~~~~~I~vd~IR~l~~~-~~~~~~---~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
..+.--.+ .+++-. ...+++.- .++.- ..-+|. ....=|.++||.-.++.+...+|.--||+
T Consensus 254 ~~~~~~~~~~rPfR~----PHHs~S~~---aliGGG~~~~PGEISLAH~GVLFLDElpEF~r~vLe~LRqPLE~ 320 (506)
T PRK09862 254 AESVQKQWRQRPFRS----PHHSASLT---AMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES 320 (506)
T ss_pred CCCCCCCCCCCCEEC----CCCCCCHH---HHHCCCCCCCCCCEEECCCCEEEECCHHCCCHHHHHHHHHHHCC
T ss_conf 987777546685037----88765476---66379999999722213575788455000688899987762247
No 175
>PRK07914 hypothetical protein; Reviewed
Probab=97.39 E-value=0.0039 Score=44.92 Aligned_cols=104 Identities=8% Similarity=0.101 Sum_probs=82.6
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECC---CCCCCHHHHCE-EEEEECCCC-CHHHHHHHHH
Q ss_conf 211112103532205542400014567776630343416765044---33573025203-698864799-9899999999
Q gi|254780217|r 125 TANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA---SPTILSTIRSR-CLSIKFNSL-SENNLYKALE 199 (347)
Q Consensus 125 ~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~---~~~il~TI~SR-c~~i~f~~l-~~~~~~~~L~ 199 (347)
.|..+..|+|+|.+++.++.+....|+.-+.+||+.|..+++.+. -.+++..++.- ...+.+.++ ...+...|+.
T Consensus 59 pSLFae~RlVvv~~~~~~~~~~~~~l~~yl~~p~~~t~LV~~h~gg~k~Kkl~~~lkk~ga~v~~~~~l~k~~e~~~~v~ 138 (320)
T PRK07914 59 PSLFAEERVVVLEAAAEAGKDAVALIESAAADLPAGTVLVVVHSGGGRAKALANQLRKLGAQVHPCARITKASERADFVR 138 (320)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf 67668844999836110268899999998529999808999705874046799999976998986556588689999999
Q ss_pred H----HCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 7----2788896789999997598978999881
Q gi|254780217|r 200 Q----LKIMGWDSKRDFVKIAAYGSVARAIKIL 228 (347)
Q Consensus 200 ~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll 228 (347)
+ .+..+++++...+.....++.+....-+
T Consensus 139 ~e~~~~g~~i~~~A~~~Lv~~vG~dl~eLaae~ 171 (320)
T PRK07914 139 KEFRSLRVKVDDETVTALLDAVGSDIRELASAC 171 (320)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999985999999999999999862399999999
No 176
>KOG0729 consensus
Probab=97.38 E-value=0.0016 Score=47.98 Aligned_cols=169 Identities=15% Similarity=0.167 Sum_probs=97.9
Q ss_pred CHHHHCCHHHHHHHHHHHHHCC------------CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC
Q ss_conf 5656109299999999999828------------8981663117989888999999999981779988643121012678
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSG------------RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~------------~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~ 77 (347)
..+++=|-++.++.|......- ..|.+.|+|||||.||+..|++.|.. .+.|..
T Consensus 175 TY~DvGGCKeqIEklREVVE~PlL~PErfv~LGIdPPKGvllyGPPGtGKTL~ARAVANR-----------TdAcFI--- 240 (435)
T KOG0729 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR-----------TDACFI--- 240 (435)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCC-----------CCCEEE---
T ss_conf 303453669999999998843255888887527899873378689998610899987456-----------674587---
Q ss_pred CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-----------HHH
Q ss_conf 867999967898754530010001013421232378875544310222111121035322055424-----------000
Q gi|254780217|r 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-----------RNA 146 (347)
Q Consensus 78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-----------~~A 146 (347)
-+|..+.-.|--.. +---+|++-+... ..+-.|+++|++|..- .+-
T Consensus 241 ---------------RViGSELVQKYvGE----GARMVRElFeMAr----~KKACiiFFDEiDAiGGaRFDDg~ggDNEV 297 (435)
T KOG0729 241 ---------------RVIGSELVQKYVGE----GARMVRELFEMAR----TKKACIIFFDEIDAIGGARFDDGAGGDNEV 297 (435)
T ss_pred ---------------EEHHHHHHHHHHHH----HHHHHHHHHHHHC----CCCEEEEEEECCCCCCCCCCCCCCCCCHHH
T ss_conf ---------------63118999998624----6899999999852----365279984101022672035788872799
Q ss_pred HHHHHHHHH-----HCCCCCCEEEEECCCCCCCHH-----------------HHCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 145677766-----303434167650443357302-----------------5203698864799989999999972788
Q gi|254780217|r 147 ANALLKSLE-----EPPQKVLFILISHASPTILST-----------------IRSRCLSIKFNSLSENNLYKALEQLKIM 204 (347)
Q Consensus 147 aNALLK~LE-----EPp~~t~fiLit~~~~~il~T-----------------I~SRc~~i~f~~l~~~~~~~~L~~~~~~ 204 (347)
|-.+|.++- +|..|...++.|+.|+.+-|. +-+|.+.|+++.-+.+ .+
T Consensus 298 QRTMLEli~QLDGFDpRGNIKVlmATNRPdtLDpALlRPGRlDRKVEF~LPDlegR~~I~kIHaksMs----------ve 367 (435)
T KOG0729 298 QRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS----------VE 367 (435)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCEEEEEECCCCC----------CC
T ss_conf 99999999860377888875898634898876876628764231121058762355125777411144----------23
Q ss_pred CCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 8967899999975989789998
Q gi|254780217|r 205 GWDSKRDFVKIAAYGSVARAIK 226 (347)
Q Consensus 205 ~~~~~~~~~~~~s~Gs~~~A~~ 226 (347)
-+-..+.+++++..|-|.-++
T Consensus 368 -rdIR~eLlarLCpnsTGAeiR 388 (435)
T KOG0729 368 -RDIRFELLARLCPNSTGAEIR 388 (435)
T ss_pred -CCHHHHHHHHHCCCCCCHHHH
T ss_conf -221699998658897425788
No 177
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=97.36 E-value=0.023 Score=38.71 Aligned_cols=168 Identities=13% Similarity=0.082 Sum_probs=108.6
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf 99999982889816631179898889999999999817799886431210126788679999678987545300100010
Q gi|254780217|r 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK 102 (347)
Q Consensus 23 ~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k 102 (347)
.+...+.+++++..|++||+.=.=....+..+.+... ..-.|..++... +.
T Consensus 5 ~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~---------------------------~~~~~~~~~~~~-~~- 55 (334)
T COG1466 5 ELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRAL---------------------------ADGFDENYSFFD-DS- 55 (334)
T ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---------------------------HCCCCEEEEECC-CC-
T ss_conf 8999861478751899966864689999999999734---------------------------315661345436-55-
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-HHHHHHHHHHHHHCC-CCCCEEEEECCCC---CCCHHH
Q ss_conf 13421232378875544310222111121035322055424-000145677766303-4341676504433---573025
Q gi|254780217|r 103 TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-RNAANALLKSLEEPP-QKVLFILISHASP---TILSTI 177 (347)
Q Consensus 103 ~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-~~AaNALLK~LEEPp-~~t~fiLit~~~~---~il~TI 177 (347)
=.++-.+...+...|..|+.|++.|..++... .+..=++.....+|| ..+++++.++..+ +.-.++
T Consensus 56 ---------~~~~~~~~~~~~s~~lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~ 126 (334)
T COG1466 56 ---------ELDWADLLSELESPSLFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWL 126 (334)
T ss_pred ---------CCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf ---------56899999886276877888579987765456642789999985368978689999618875277878988
Q ss_pred HCE--EEEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 203--69886479998999999997----2788896789999997598978999881
Q gi|254780217|r 178 RSR--CLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKIL 228 (347)
Q Consensus 178 ~SR--c~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll 228 (347)
.+= +..+.+.++...++.+|+.+ .+..+++++++.+.....|+...+.+-+
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei 183 (334)
T COG1466 127 KKLAKAVVVECKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEI 183 (334)
T ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 874447346625887788999999999991898899999999998588299999999
No 178
>KOG0735 consensus
Probab=97.35 E-value=0.0036 Score=45.17 Aligned_cols=182 Identities=16% Similarity=0.172 Sum_probs=111.0
Q ss_pred CCHHHHCCHHHHHHHHHHHHHC------------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 7565610929999999999982------------8898166311798988899999999998177998864312101267
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCS------------GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~------------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
-.+.+|-|-.++++.|...+.- =|++-++|+|||||+||+.+|-+.|.. | +.
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~--~---------~~----- 727 (952)
T KOG0735 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASN--S---------NL----- 727 (952)
T ss_pred CCCEECCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH--C---------CE-----
T ss_conf 7710033589999999999855410367886088666554588779998578888888853--7---------80-----
Q ss_pred CCHHHHHHHCCCCCCEEEEC-CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC-----------CH
Q ss_conf 88679999678987545300-1000101342123237887554431022211112103532205542-----------40
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLS-YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM-----------NR 144 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~-~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~l-----------n~ 144 (347)
.++-+. ++.-.| ..+. +=+.||++-++.. ..+-.|.++|+.|.+ |.
T Consensus 728 --------------~fisvKGPElL~K--yIGa--SEq~vR~lF~rA~----~a~PCiLFFDEfdSiAPkRGhDsTGVTD 785 (952)
T KOG0735 728 --------------RFISVKGPELLSK--YIGA--SEQNVRDLFERAQ----SAKPCILFFDEFDSIAPKRGHDSTGVTD 785 (952)
T ss_pred --------------EEEEECCHHHHHH--HHCC--CHHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCCCCCCHH
T ss_conf --------------5998258899998--7450--0788999999865----1497489712102437666877777429
Q ss_pred HHHHHHHHHHH--HCCCCCCEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHH---HHCCCCCHHHHHHHHHH
Q ss_conf 00145677766--303434167650443357302520--36-988647999899999999---72788896789999997
Q gi|254780217|r 145 NAANALLKSLE--EPPQKVLFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALE---QLKIMGWDSKRDFVKIA 216 (347)
Q Consensus 145 ~AaNALLK~LE--EPp~~t~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~---~~~~~~~~~~~~~~~~~ 216 (347)
---|-||--|. |--.+++++=.|+.|+-|-|.++- |- ..+....|++.+-.++++ .......+..++.++..
T Consensus 786 RVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~ 865 (952)
T KOG0735 786 RVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQK 865 (952)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 99999987603633445389997337834367766288765401567998928999999998534577521016887652
Q ss_pred CCCCHHHHHHHH
Q ss_conf 598978999881
Q gi|254780217|r 217 AYGSVARAIKIL 228 (347)
Q Consensus 217 s~Gs~~~A~~ll 228 (347)
.+|=-|.-++.+
T Consensus 866 T~g~tgADlq~l 877 (952)
T KOG0735 866 TDGFTGADLQSL 877 (952)
T ss_pred CCCCCHHHHHHH
T ss_conf 178736659989
No 179
>PRK09183 transposase/IS protein; Provisional
Probab=97.33 E-value=0.00063 Score=51.28 Aligned_cols=99 Identities=14% Similarity=0.209 Sum_probs=60.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
++.++|.||+|+||+.+|.+++.... .. |- .+.++..+. -++
T Consensus 101 ~~Nvil~G~~GtGKThLA~Alg~~A~-~~------------------------G~--~v~f~~~~~-----------L~~ 142 (258)
T PRK09183 101 NENIVLLGPSGVGKTHLAIALGYEAV-RA------------------------GI--KVRFTTAAD-----------LLL 142 (258)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH-HC------------------------CC--EEEEEEHHH-----------HHH
T ss_conf 88679989999868999999999999-87------------------------99--399978999-----------999
Q ss_pred HHHHHHHHCCCC----CCCCCCHHHHHHHHH--HCCHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 875544310222----111121035322055--424000145677766303434167650443
Q gi|254780217|r 114 EIRRIRYFLSLT----ANTGYWRVIMIDPVD--GMNRNAANALLKSLEEPPQKVLFILISHAS 170 (347)
Q Consensus 114 ~IR~l~~~~~~~----~~~~~~Ki~IId~ad--~ln~~AaNALLK~LEEPp~~t~fiLit~~~ 170 (347)
+++.-...-.+. -...+..+.||||.- .++.+.++-|..++++=-+..-.|++|+.+
T Consensus 143 ~L~~a~~~~~~~~~l~r~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye~~S~IiTSn~~ 205 (258)
T PRK09183 143 QLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGAMILTSNLP 205 (258)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 999998768599999987434651443133154688889999999999985767789988999
No 180
>KOG0728 consensus
Probab=97.32 E-value=0.00082 Score=50.35 Aligned_cols=156 Identities=16% Similarity=0.178 Sum_probs=85.4
Q ss_pred CCCHHHHCC-HHHHHHHHHHHHHCC------------CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCC
Q ss_conf 875656109-299999999999828------------8981663117989888999999999981779988643121012
Q gi|254780217|r 8 PVYNQRLFG-HEDIEKFLSQYYCSG------------RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP 74 (347)
Q Consensus 8 p~~~~~i~G-~~~~~~~L~~~~~~~------------~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~ 74 (347)
|-+..+.+| -+..+..++..+.-- --|.+.|+|||||.||+.+|++.|.+--|...--.+ +
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsg------s 215 (404)
T KOG0728 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG------S 215 (404)
T ss_pred CCCHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECH------H
T ss_conf 8308887503888999999998265668789985187887604884699975629999987541407999644------9
Q ss_pred CCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-----------
Q ss_conf 678867999967898754530010001013421232378875544310222111121035322055424-----------
Q gi|254780217|r 75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN----------- 143 (347)
Q Consensus 75 ~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln----------- 143 (347)
. -+-+.|-.| -.-+|++- .-+-+..--|++.|++|..-
T Consensus 216 e---lvqk~igeg------------------------srmvrelf----vmarehapsiifmdeidsigs~r~e~~~ggd 264 (404)
T KOG0728 216 E---LVQKYIGEG------------------------SRMVRELF----VMAREHAPSIIFMDEIDSIGSSRVESGSGGD 264 (404)
T ss_pred H---HHHHHHHHH------------------------HHHHHHHH----HHHHHCCCCEEEEHHCCCCCCCCCCCCCCCC
T ss_conf 9---999985013------------------------89999999----9987508826750000121234345789863
Q ss_pred HHHHHHHHHHHH-----HCCCCCCEEEEECCCCCCCHHHHCEE---EEEECCCCCHHHHHHHHHH
Q ss_conf 000145677766-----30343416765044335730252036---9886479998999999997
Q gi|254780217|r 144 RNAANALLKSLE-----EPPQKVLFILISHASPTILSTIRSRC---LSIKFNSLSENNLYKALEQ 200 (347)
Q Consensus 144 ~~AaNALLK~LE-----EPp~~t~fiLit~~~~~il~TI~SRc---~~i~f~~l~~~~~~~~L~~ 200 (347)
.+-|-.+|-.|- |..+|...|+.|+..+-+-|.+.--- +++.|+|++++.-.++|+-
T Consensus 265 sevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilki 329 (404)
T KOG0728 265 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKI 329 (404)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 89999999999740240003662699841642224686638775455564899877888789988
No 181
>KOG0739 consensus
Probab=97.32 E-value=0.0027 Score=46.18 Aligned_cols=181 Identities=18% Similarity=0.145 Sum_probs=97.9
Q ss_pred CHHHHCCHHHHHHHHHHHH----------HCCCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 5656109299999999999----------828898-16631179898889999999999817799886431210126788
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYY----------CSGRMH-HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~----------~~~~l~-ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~ 78 (347)
.+++|.|-+.+++.|+.+. ..+|-| .++|+|||||+||.-+|.+.|..-.. ..-..+ .++
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFSvS--SSD 201 (439)
T KOG0739 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFFSVS--SSD 201 (439)
T ss_pred CHHHHCCCHHHHHHHHHHEEECCCCHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC-------CEEEEE--HHH
T ss_conf 62330140568999875435000253541588775425788679997577999998741477-------068730--178
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH----HHHHH-----
Q ss_conf 679999678987545300100010134212323788755443102221111210353220554240----00145-----
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR----NAANA----- 149 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----~AaNA----- 149 (347)
-+.++ ....+ .|++-+..-+-+++--|++||++|.|.. +-.-|
T Consensus 202 LvSKW----------------mGESE------------kLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIK 253 (439)
T KOG0739 202 LVSKW----------------MGESE------------KLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIK 253 (439)
T ss_pred HHHHH----------------HCCHH------------HHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCHHHHHHHH
T ss_conf 89987----------------32179------------999999999873499479863444432688777117777777
Q ss_pred --HHHHHHHCC--CCCCEEEE-ECCCCCCCHHHHCEEEE-EECCCCCHHHHHHHHHHH-----CCCCCHHHHHHHHHHCC
Q ss_conf --677766303--43416765-04433573025203698-864799989999999972-----78889678999999759
Q gi|254780217|r 150 --LLKSLEEPP--QKVLFILI-SHASPTILSTIRSRCLS-IKFNSLSENNLYKALEQL-----KIMGWDSKRDFVKIAAY 218 (347)
Q Consensus 150 --LLK~LEEPp--~~t~fiLi-t~~~~~il~TI~SRc~~-i~f~~l~~~~~~~~L~~~-----~~~~~~~~~~~~~~~s~ 218 (347)
||--+---. ...+++|- |+-|-.+-..||-|.-+ +++ ||++...+..+-+. -....+.....+..-.+
T Consensus 254 TEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTe 332 (439)
T KOG0739 254 TEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTE 332 (439)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCEEC-CCCCHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCC
T ss_conf 7888764066658886489723788436779999876502301-087378765550320478864133566999976437
Q ss_pred CCHHHHHHHH
Q ss_conf 8978999881
Q gi|254780217|r 219 GSVARAIKIL 228 (347)
Q Consensus 219 Gs~~~A~~ll 228 (347)
|=-|.-+..+
T Consensus 333 GySGsDisiv 342 (439)
T KOG0739 333 GYSGSDISIV 342 (439)
T ss_pred CCCCCCEEEE
T ss_conf 8776754778
No 182
>KOG2680 consensus
Probab=97.31 E-value=0.0064 Score=43.18 Aligned_cols=114 Identities=20% Similarity=0.232 Sum_probs=79.7
Q ss_pred HHHH-HHHHCCCCCCCCCC----HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEC-------------CCCCCCH
Q ss_conf 8755-44310222111121----0353220554240001456777663034341676504-------------4335730
Q gi|254780217|r 114 EIRR-IRYFLSLTANTGYW----RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH-------------ASPTILS 175 (347)
Q Consensus 114 ~IR~-l~~~~~~~~~~~~~----Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~-------------~~~~il~ 175 (347)
++|+ +..++..=-.+|+- -|.+||++|.+..+...-|=+-||+ +-+-+++.++ .|+.||-
T Consensus 267 EvRdqin~KV~eWreEGKAeivpGVLFIDEvHMLDIEcFsFlNrAlE~--d~~PiiimaTNrgit~iRGTn~~SphGiP~ 344 (454)
T KOG2680 267 EVRDQINTKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALEN--DMAPIIIMATNRGITRIRGTNYRSPHGIPI 344 (454)
T ss_pred HHHHHHHHHHHHHHHCCCEEECCCEEEEEEEHHHHHHHHHHHHHHHHH--CCCCEEEEECCCCEEEEECCCCCCCCCCCH
T ss_conf 889888788898886177242255178740021115799988887650--468579997277557760577789888867
Q ss_pred HHHCEEEEEECCCCCHHHHHHHHH----HHCCCCCHHHHHHHHHHCCC-CHHHHHHHHC
Q ss_conf 252036988647999899999999----72788896789999997598-9789998814
Q gi|254780217|r 176 TIRSRCLSIKFNSLSENNLYKALE----QLKIMGWDSKRDFVKIAAYG-SVARAIKILH 229 (347)
Q Consensus 176 TI~SRc~~i~f~~l~~~~~~~~L~----~~~~~~~~~~~~~~~~~s~G-s~~~A~~ll~ 229 (347)
-..-|...+.-.|-++++++++|. ++.....+++.+.+...+.- |.+-|++++.
T Consensus 345 D~lDR~lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit 403 (454)
T KOG2680 345 DLLDRMLIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLIT 403 (454)
T ss_pred HHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77644125525657688999998755005213358789999998613123789999988
No 183
>KOG2227 consensus
Probab=97.30 E-value=0.0041 Score=44.73 Aligned_cols=202 Identities=14% Similarity=0.203 Sum_probs=109.2
Q ss_pred HHHCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC-CCCHHHHHHHCC
Q ss_conf 5610929999999999982---889816631179898889999999999817799886431210126-788679999678
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCS---GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD-PCSPFVKQMASH 87 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~---~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~-~~~~~~~~i~~~ 87 (347)
+.++|-+.....+...+.. .+-+.++-.+|.||.||+..-..+-..+-|......-..-.|.+- .....+..|..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~- 228 (529)
T KOG2227 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS- 228 (529)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH-
T ss_conf 7765258889999999985431266764575179986548899999874034316651699851235425889999988-
Q ss_pred CCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCCEEEE
Q ss_conf 98754530010001013421232378875544310222111121035322055424000145677766303-43416765
Q gi|254780217|r 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP-QKVLFILI 166 (347)
Q Consensus 88 ~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp-~~t~fiLi 166 (347)
.+.. +..++.. . .+--+.+-.-+..+. ..=|++.|+.|.+-...+-+|.-+.|=|- .+..+|||
T Consensus 229 ---~~~q-----~~~s~~~--~--~~~~~~~~~h~~q~k---~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLi 293 (529)
T KOG2227 229 ---SLLQ-----DLVSPGT--G--MQHLEKFEKHTKQSK---FMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILI 293 (529)
T ss_pred ---HHHH-----HHCCCCH--H--HHHHHHHHHHHHCCC---CEEEEEECHHHHHHHCCCCEEEEEHHCCCCCCCEEEEE
T ss_conf ---8988-----7428950--4--789999999875256---33898721256776046531432100136776605666
Q ss_pred --ECCC---CCCCHHHHCEE----EEEECCCCCHHHHHHHHHHHCCC-----CCHHHHHHHHHH---CCCCHHHHHHHHC
Q ss_conf --0443---35730252036----98864799989999999972788-----896789999997---5989789998814
Q gi|254780217|r 167 --SHAS---PTILSTIRSRC----LSIKFNSLSENNLYKALEQLKIM-----GWDSKRDFVKIA---AYGSVARAIKILH 229 (347)
Q Consensus 167 --t~~~---~~il~TI~SRc----~~i~f~~l~~~~~~~~L~~~~~~-----~~~~~~~~~~~~---s~Gs~~~A~~ll~ 229 (347)
++.. ++.||++.+|| +.+.|+|-+.++|.++|++.-.+ .-..++++.++- .-|++|+|+....
T Consensus 294 GiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227 294 GIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred EEHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 40013557777766654025788746655687889999999999740544333038999999986257612899999998
No 184
>KOG0736 consensus
Probab=97.29 E-value=0.0033 Score=45.45 Aligned_cols=53 Identities=21% Similarity=0.203 Sum_probs=41.7
Q ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHC----------CCC-CEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 55587565610929999999999982----------889-816631179898889999999999
Q gi|254780217|r 5 AFDPVYNQRLFGHEDIEKFLSQYYCS----------GRM-HHALLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 5 ~~~p~~~~~i~G~~~~~~~L~~~~~~----------~~l-~ha~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
|.--.+|+||=|-++++..+...+.- |=. --++|||||||+|||.+|.+.|..
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE 728 (953)
T KOG0736 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE 728 (953)
T ss_pred CCCCCCHHCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8896460015578999999998754754375665125431350588779998557999998754
No 185
>KOG0745 consensus
Probab=97.29 E-value=0.00031 Score=53.80 Aligned_cols=89 Identities=21% Similarity=0.345 Sum_probs=54.8
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHH
Q ss_conf 66311798988899999999998177998864312101267886799996789875453001000101342123237887
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~I 115 (347)
.+|+.||.|+||+-+|..+|+.|. .|.-.|.. ..+-.+ .| .+. -||.|
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ld-------VPfaIcDc------TtLTQA----GY-------------VGe--DVEsv 275 (564)
T KOG0745 228 NVLLLGPTGSGKTLLAQTLARVLD-------VPFAICDC------TTLTQA----GY-------------VGE--DVESV 275 (564)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-------CCEEEECC------CCHHHC----CC-------------CCC--CHHHH
T ss_conf 479977888764389999999708-------87687325------522005----53-------------454--29999
Q ss_pred H-HHHHHCCCCCCCCCCHHHHHHHHHHCCHH--------------HHHHHHHHHHH
Q ss_conf 5-54431022211112103532205542400--------------01456777663
Q gi|254780217|r 116 R-RIRYFLSLTANTGYWRVIMIDPVDGMNRN--------------AANALLKSLEE 156 (347)
Q Consensus 116 R-~l~~~~~~~~~~~~~Ki~IId~ad~ln~~--------------AaNALLK~LEE 156 (347)
- .|.....+--.....-||.+|++|.++.. -|.||||+||-
T Consensus 276 i~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745 276 IQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred HHHHHHHCCCCHHHHHCCEEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 99999972578998826738876012441367654544456626699999998526
No 186
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=97.28 E-value=0.0024 Score=46.66 Aligned_cols=148 Identities=14% Similarity=0.098 Sum_probs=70.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEE-ECCCCHHHCCCCCCCCCHHH
Q ss_conf 66311798988899999999998177998864312101267886799996789875453-00100010134212323788
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY-LSYSLNPKTGKWRTVITVDE 114 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~-i~~~~~~k~~~~~~~I~vd~ 114 (347)
.+++.|++|+||+|+++.+|..............-. .-.|+.+.......+.. +...+. .....+++
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf------~~~~r~~~~~~~~sl~~ll~~~~~------~~~~~~~~ 69 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVF------FLPCRELSRSGEASLADLLFSQWP------EPAAPVSE 69 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE------EEEHHHHCCCCCCCHHHHHHHHCC------CCCCCHHH
T ss_conf 899982798989999999999998698436972899------999567077766899999998767------74576378
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH---------HHHHHHHHHHC-CCCCCEEEEECCCCCC--CHHHHCEEE
Q ss_conf 75544310222111121035322055424000---------14567776630-3434167650443357--302520369
Q gi|254780217|r 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA---------ANALLKSLEEP-PQKVLFILISHASPTI--LSTIRSRCL 182 (347)
Q Consensus 115 IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A---------aNALLK~LEEP-p~~t~fiLit~~~~~i--l~TI~SRc~ 182 (347)
+...+ . ...+.=.+|+|..|.+.... ...|...|... -+++. +++|+.|... ++-....-+
T Consensus 70 ~~~~~---~---~~~~k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll~~~~lp~~~-vliTsRp~~~~~l~~~~~~~~ 142 (165)
T pfam05729 70 VWAVI---L---ELPERVLLILDGLDELASDLGQLDGPLPVLTLLSSLLRKKLLPGAS-LLLTSRPDALRDLRRGLEEPR 142 (165)
T ss_pred HHHHH---H---HCCCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCE-EEEEECCCHHHHHHHHCCCCC
T ss_conf 99999---8---3977289996484551444356444577999999998415278864-999968037988577648871
Q ss_pred EEECCCCCHHHHHHHHHHHC
Q ss_conf 88647999899999999727
Q gi|254780217|r 183 SIKFNSLSENNLYKALEQLK 202 (347)
Q Consensus 183 ~i~f~~l~~~~~~~~L~~~~ 202 (347)
.+.+...+++++.+++.+..
T Consensus 143 ~~ei~GFs~~~~~~yi~~~F 162 (165)
T pfam05729 143 YLEVLGFSEEDRKQYVRKYF 162 (165)
T ss_pred EEEECCCCHHHHHHHHHHHC
T ss_conf 89988999999999999867
No 187
>KOG1808 consensus
Probab=97.28 E-value=0.00085 Score=50.22 Aligned_cols=154 Identities=19% Similarity=0.311 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEE-E
Q ss_conf 929999999999982889816631179898889999999999817799886431210126788679999678987545-3
Q gi|254780217|r 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL-Y 94 (347)
Q Consensus 16 G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~-~ 94 (347)
-++.....+..+..+|++| +||.||.|+||++++..+|+...- .+.+|.+..|-|+. +
T Consensus 424 ~vq~~la~~~~a~~~~~~p--illqG~tssGKtsii~~la~~~g~-------------------~~vrinnhehtd~qey 482 (1856)
T KOG1808 424 RVQKNLADLARAISSGKFP--ILLQGPTSSGKTSIIKELARATGK-------------------NIVRINNHEHTDLQEY 482 (1856)
T ss_pred HHHHHHHHHHHHHHCCCCC--EEEECCCCCCCHHHHHHHHHHHCC-------------------CCEEHHCCCCCHHHHH
T ss_conf 9998899999999658998--677547676811599999998546-------------------7342002463339999
Q ss_pred ECCCCHHHCCCC--CCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH-----CCCCCC-----
Q ss_conf 001000101342--12323788755443102221111210353220554240001456777663-----034341-----
Q gi|254780217|r 95 LSYSLNPKTGKW--RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE-----PPQKVL----- 162 (347)
Q Consensus 95 i~~~~~~k~~~~--~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE-----Pp~~t~----- 162 (347)
|.......++.. +..+-|.. ...| ..++.|+.+.-+.+--+||.++|+. -|++..
T Consensus 483 ig~y~~~~~g~l~freg~LV~A-----------lr~G--~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h 549 (1856)
T KOG1808 483 IGTYVADDNGDLVFREGVLVQA-----------LRNG--DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAH 549 (1856)
T ss_pred HHHHEECCCCCEEEEHHHHHHH-----------HHHC--CEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCC
T ss_conf 8665007889725534689999-----------8708--77984020124067899998404540412563443232247
Q ss_pred ---EEEEECCCCCC-------CHHHHCEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf ---67650443357-------302520369886479998999999997278
Q gi|254780217|r 163 ---FILISHASPTI-------LSTIRSRCLSIKFNSLSENNLYKALEQLKI 203 (347)
Q Consensus 163 ---fiLit~~~~~i-------l~TI~SRc~~i~f~~l~~~~~~~~L~~~~~ 203 (347)
.++.|.++... .-.+++|.+.++|.-++++++..++.....
T Consensus 550 ~~f~lfatqn~~~~y~grk~lsRa~~~rf~e~~f~~~~e~e~~~i~~~~~~ 600 (1856)
T KOG1808 550 PEFMLFATQNPPGTYGGRKILSRALRNRFIELHFDDIGEEELEEILEHRCG 600 (1856)
T ss_pred CCHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHCCCCC
T ss_conf 012345430776665315665531444002353552571455556402356
No 188
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.22 E-value=0.002 Score=47.18 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999999982889816631179898889999999999817799
Q gi|254780217|r 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 (347)
Q Consensus 21 ~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~ 63 (347)
++.+..+++.. |+ ++++||||+|||-+|.+||.+|....+
T Consensus 184 i~~~~~sLktK--kn-vIL~G~pGtGKT~lAk~lA~~l~g~~~ 223 (459)
T PRK11331 184 IETILKRLTIK--KN-IILQGPPGVGKTFVARRLAYLLTGEKA 223 (459)
T ss_pred HHHHHHHHCCC--CC-EEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999985458--82-796589998878999999999707887
No 189
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.18 E-value=0.0013 Score=48.79 Aligned_cols=127 Identities=21% Similarity=0.318 Sum_probs=70.0
Q ss_pred CHHHHCCHHHHHHHHHHHHH---CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH--HCCCCCCCHHHHHH
Q ss_conf 56561092999999999998---28898166311798988899999999998177998864312--10126788679999
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYC---SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR--MCNPDPCSPFVKQM 84 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~---~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~--~~~~~~~~~~~~~i 84 (347)
.|++++|+...++......+ ....| +|++|+.|+||+++|+++-. ...-..+|+- .|..-+.. .+
T Consensus 323 ~f~~l~g~s~~~~~~~~~a~~~a~~~~p--VLI~GE~GtGKe~lAraIH~----~S~r~~~pfv~vnC~ai~~~----~~ 392 (639)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFP--ILLCGEEGVGKALLAQAIHN----ESERAAGPYIAVNCQLLPDE----AL 392 (639)
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHHHH----CCCCCCCCEEEEECCCCCHH----HH
T ss_conf 8554467999999999999999688996--89889898109999999995----57778998189878989846----78
Q ss_pred HCCCCCCEEEECCCC-HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC------
Q ss_conf 678987545300100-0101342123237887554431022211112103532205542400014567776630------
Q gi|254780217|r 85 ASHALHDFLYLSYSL-NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP------ 157 (347)
Q Consensus 85 ~~~~hpd~~~i~~~~-~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP------ 157 (347)
++ .+ +.+.. ..+.+. ...+.. ..| -.+++|+++.|..+.|.+||..|||-
T Consensus 393 e~----el--fG~~~~~~~~g~-------------~g~~e~--A~g--GTL~LdeI~~lp~~~Q~~LlrvL~~~~~~r~g 449 (639)
T PRK11388 393 AE----EF--LGSDRTDSENGR-------------LSKFEL--AHG--GTLFLEKVEYLSVELQSALLQVLKTGVITRLD 449 (639)
T ss_pred HH----HH--CCCCCCCCCCCC-------------CCHHHC--CCC--CEEEECCHHHCCHHHHHHHHHHHHCCCEEECC
T ss_conf 99----87--387767643466-------------862440--369--82884672649999999999998659378569
Q ss_pred -----CCCCCEEEEECC
Q ss_conf -----343416765044
Q gi|254780217|r 158 -----PQKVLFILISHA 169 (347)
Q Consensus 158 -----p~~t~fiLit~~ 169 (347)
|-++.+|-.|+.
T Consensus 450 ~~~~~~vdvRiiaat~~ 466 (639)
T PRK11388 450 SRRLIPVDVRVIATTTA 466 (639)
T ss_pred CCCEEEEEEEEEEECCH
T ss_conf 99466642799973645
No 190
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.17 E-value=0.0011 Score=49.31 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=70.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHH-HH---HCCCCCCEEEECCCCHHHCCCCCCC
Q ss_conf 8166311798988899999999998177998864312101267886799-99---6789875453001000101342123
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK-QM---ASHALHDFLYLSYSLNPKTGKWRTV 109 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~-~i---~~~~hpd~~~i~~~~~~k~~~~~~~ 109 (347)
|+-++|.||.|+||||++-.+|.++.-. + ......+.|..+.... ++ ....--.++......
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~~-~---~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~---------- 66 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKKQ-G---KKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGS---------- 66 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC-C---CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCC----------
T ss_conf 9699998999998899999999999977-9---9289997587768899999999986398178148777----------
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHH--HHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 23788755443102221111210353220554240001--456777663-034341676504433573025203698864
Q gi|254780217|r 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA--NALLKSLEE-PPQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 110 I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~Aa--NALLK~LEE-Pp~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
-.++-.++..+.+. ..++-+++||-+-+...+.. .-|-++.+. +|..++++|-++....-+..+..+...+.+
T Consensus 67 d~~~~~~~~l~~~~----~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~ 142 (196)
T pfam00448 67 DPAAVAFDAVEKAK----AENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNALNQAKAFNEAVGI 142 (196)
T ss_pred CHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 87899999999988----46899999989998747677899999998522873028998567782137899987600477
No 191
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.13 E-value=0.0032 Score=45.62 Aligned_cols=155 Identities=15% Similarity=0.208 Sum_probs=79.9
Q ss_pred CHHHHCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH--HCCCCCCCHHHHHHHC
Q ss_conf 565610929999999999982-8898166311798988899999999998177998864312--1012678867999967
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR--MCNPDPCSPFVKQMAS 86 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~--~~~~~~~~~~~~~i~~ 86 (347)
.+..++|+-...+.+...+.. ..-+...|++|+.|+||..+|+++=.. ..-...|+- .|..-+.+ .+++
T Consensus 141 ~~~~lig~S~~m~~v~~~i~~~A~s~~~VLI~GEsGTGKe~~Ar~IH~~----S~r~~~pFv~vnc~ai~~~----l~es 212 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYN----SRRAKGPFIKVNCAALPES----LLES 212 (457)
T ss_pred CCCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH----CCCCCCCEEEEECCCCCHH----HHHH
T ss_conf 5677454699999999999998488995899889985789999999983----7988998387647879857----7899
Q ss_pred CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC---------
Q ss_conf 89875453001000101342123237887554431022211112103532205542400014567776630---------
Q gi|254780217|r 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP--------- 157 (347)
Q Consensus 87 ~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP--------- 157 (347)
.++ .. +++ .. -+.+.-| ...+.. ..|+ ..++|+++.|..+.|..||+.|||-
T Consensus 213 ----eLF--G~---~kg-af---tga~~~~--~G~~e~--A~gG--TLfLdeI~~l~~~~Q~kLLr~L~~~~~~~~g~~~ 273 (457)
T PRK11361 213 ----ELF--GH---EKG-AF---TGAQTLR--QGLFER--ANEG--TLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQ 273 (457)
T ss_pred ----HHH--CC---CCC-CC---CCCCCCC--CCCHHH--CCCC--CEECCCHHHHHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf ----971--87---667-87---8853146--986133--5998--2631466452399999999998649278569971
Q ss_pred --CCCCCEEEEECCC-------CCCCHHHHCEE--EEEECCCCCH
Q ss_conf --3434167650443-------35730252036--9886479998
Q gi|254780217|r 158 --PQKVLFILISHAS-------PTILSTIRSRC--LSIKFNSLSE 191 (347)
Q Consensus 158 --p~~t~fiLit~~~-------~~il~TI~SRc--~~i~f~~l~~ 191 (347)
+-++.+|-.|+.. ...-+-+..|- ..+.++||.+
T Consensus 274 ~~~~dvRiIaaT~~~L~~~v~~g~Fr~DLyyrL~~~~i~lPpLRe 318 (457)
T PRK11361 274 TIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRD 318 (457)
T ss_pred EEEECCEEEECCCCCHHHHHHCCCCHHHHHHHHCEEEEECCCHHH
T ss_conf 366534899657878599987583238899530221251738545
No 192
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.11 E-value=0.0028 Score=46.00 Aligned_cols=205 Identities=15% Similarity=0.111 Sum_probs=125.4
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 55875656109299999999999828898166311798988899999999998177998864312101267886799996
Q gi|254780217|r 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA 85 (347)
Q Consensus 6 ~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (347)
.+|..-...+--+...+.| ..+.=--.+||+-|-|.||+|++-.+++..-....-....|++-..++.++.-+.+.
T Consensus 13 ~~P~~~~~~v~R~rL~~~L----~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRL----RRANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCCCCCCCCCCCHHHHHHH----HHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 7999950026538999998----607784389986788775889999999864765543576457766788999999999
Q ss_pred CCC--CCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHHCCHHHHHH-HHHHHHHCCCC
Q ss_conf 789--87545300100010134212323788755443102--22111121035322055424000145-67776630343
Q gi|254780217|r 86 SHA--LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLS--LTANTGYWRVIMIDPVDGMNRNAANA-LLKSLEEPPQK 160 (347)
Q Consensus 86 ~~~--hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~--~~~~~~~~Ki~IId~ad~ln~~AaNA-LLK~LEEPp~~ 160 (347)
+-. +|+.-.-.-..-.+.+ -+.++.+..++- +.+..+. -.+++||-|..+..+-++ |-..|+--|+|
T Consensus 89 al~~~~p~~~~~a~~l~q~~~-------~~~l~~l~~~L~~Ela~~~~p-l~LVlDDyHli~~~~l~~~l~fLl~~~P~~ 160 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQ-------YVSLESLLSSLLNELASYEGP-LYLVLDDYHLISDPALHEALRFLLKHAPEN 160 (894)
T ss_pred HHHHHCCCCCHHHHHHHHHCC-------CCCHHHHHHHHHHHHHHHCCC-EEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 998747232478999987335-------565999999999998751496-499953532257602899999999719987
Q ss_pred CCEEEEECCCCC-CCHHHHCEEEEEECC----CCCHHHHHHHHHHHC-CCCCHHHHHHHHHHCCCCHH
Q ss_conf 416765044335-730252036988647----999899999999727-88896789999997598978
Q gi|254780217|r 161 VLFILISHASPT-ILSTIRSRCLSIKFN----SLSENNLYKALEQLK-IMGWDSKRDFVKIAAYGSVA 222 (347)
Q Consensus 161 t~fiLit~~~~~-il~TI~SRc~~i~f~----~l~~~~~~~~L~~~~-~~~~~~~~~~~~~~s~Gs~~ 222 (347)
...+++|.+.-. -+.+.|=|=+.+-+. +.+.++..+++...+ ...+....+.+...++|=+.
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~ 228 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAA 228 (894)
T ss_pred EEEEEEECCCCCCCCCCEEEHHHHHHCCHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHH
T ss_conf 49999765688876442011216775185864578599999999718997785889878850243999
No 193
>KOG0741 consensus
Probab=97.10 E-value=0.0032 Score=45.59 Aligned_cols=156 Identities=22% Similarity=0.273 Sum_probs=77.6
Q ss_pred CHHHHCCHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCC
Q ss_conf 5656109299-999999999828898166311798988899999999998177998864312101267886799996789
Q gi|254780217|r 10 YNQRLFGHED-IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 (347)
Q Consensus 10 ~~~~i~G~~~-~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (347)
.+.+++-+.. .+++.+++-.+ ++ -+.|++||+|+||+++|-.+|.. +..|.
T Consensus 515 ~v~~il~~G~llv~qvk~s~~s-~l-vSvLl~Gp~~sGKTaLAA~iA~~-------S~FPF------------------- 566 (744)
T KOG0741 515 PVTRILDDGKLLVQQVKNSERS-PL-VSVLLEGPPGSGKTALAAKIALS-------SDFPF------------------- 566 (744)
T ss_pred CHHHHHHHHHHHHHHHHCCCCC-CC-EEEEEECCCCCCHHHHHHHHHHH-------CCCCE-------------------
T ss_conf 0778876688999986334667-63-58998669988768899999752-------79984-------------------
Q ss_pred CCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC----------HHHHHHHHHHHHHCC
Q ss_conf 8754530010001013421232378875544310222111121035322055424----------000145677766303
Q gi|254780217|r 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN----------RNAANALLKSLEEPP 158 (347)
Q Consensus 89 hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln----------~~AaNALLK~LEEPp 158 (347)
+.++++. +--....+=++-.|+.+-...+.+|.. |+|+|++|++= ..-..||+-.|-++|
T Consensus 567 ---vKiiSpe---~miG~sEsaKc~~i~k~F~DAYkS~ls----iivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~p 636 (744)
T KOG0741 567 ---VKIISPE---DMIGLSESAKCAHIKKIFEDAYKSPLS----IIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQP 636 (744)
T ss_pred ---EEEECHH---HHCCCCHHHHHHHHHHHHHHHHCCCCE----EEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf ---7973778---703746678899999988876338650----899815565620024684035799999999952489
Q ss_pred CC--CCEEEEECCCCCCCHH-HHCEE--EEEECCCCCH-HHHHHHHHHHCC
Q ss_conf 43--4167650443357302-52036--9886479998-999999997278
Q gi|254780217|r 159 QK--VLFILISHASPTILST-IRSRC--LSIKFNSLSE-NNLYKALEQLKI 203 (347)
Q Consensus 159 ~~--t~fiLit~~~~~il~T-I~SRc--~~i~f~~l~~-~~~~~~L~~~~~ 203 (347)
+. -+||+.|+..-.+|.- =.+-| -.+.++.++. +++.++|.+.+.
T Consensus 637 pkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~ 687 (744)
T KOG0741 637 PKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNI 687 (744)
T ss_pred CCCCEEEEEECCCHHHHHHHCCHHHHHHHEEECCCCCCHHHHHHHHHHCCC
T ss_conf 888459999624079999972778751110546756864789999997166
No 194
>PRK13695 putative NTPase; Provisional
Probab=97.10 E-value=0.0012 Score=49.02 Aligned_cols=145 Identities=19% Similarity=0.226 Sum_probs=75.3
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCC-------------C
Q ss_conf 981663117989888999999999981779988643121012678867999967898754530010-------------0
Q gi|254780217|r 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYS-------------L 99 (347)
Q Consensus 33 l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~-------------~ 99 (347)
.+.-++++|+||+||+|+...++..|-+..- ..+|....+. ...|.--.+..++.. .
T Consensus 2 ~~~kI~iTG~PGvGKTTli~Kv~~~L~~~g~---~v~GF~T~Ev-------re~G~R~GF~vv~l~~g~~~~lA~~~~~~ 71 (174)
T PRK13695 2 AALRIGITGMPGVGKTTLVLKIAELLAREGY---KVGGFITEEV-------REGGKRIGFKIIDLDTGEEGILARVGAVS 71 (174)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEEEEEE-------ECCCEEEEEEEEECCCCCEEEEEECCCCC
T ss_conf 8429998789998899999999999863696---1746995256-------03882850599990588568767537889
Q ss_pred HHHCCCCCCCCCHHHHHHH-HHHCCCCCCCCCCHHHHHHHHHHCCHH---HHHHHHHHHHHCCCCCCEEEEECCCCCCCH
Q ss_conf 0101342123237887554-431022211112103532205542400---014567776630343416765044335730
Q gi|254780217|r 100 NPKTGKWRTVITVDEIRRI-RYFLSLTANTGYWRVIMIDPVDGMNRN---AANALLKSLEEPPQKVLFILISHASPTILS 175 (347)
Q Consensus 100 ~~k~~~~~~~I~vd~IR~l-~~~~~~~~~~~~~Ki~IId~ad~ln~~---AaNALLK~LEEPp~~t~fiLit~~~~~il~ 175 (347)
..+.++. .+.+++.-.+ ..-+.... ....++|||++-.|-.. -.+++.+.|+- +...+.+-+. .++.
T Consensus 72 ~~~VgkY--~V~~~~~e~~~~~~l~~a~--~~~dlivIDEIG~MEl~s~~F~~~V~~~L~s---~kpvl~tih~--p~v~ 142 (174)
T PRK13695 72 RPRVGKY--VVNLEDLERIAIPAISRAL--READLIIIDEIGPMELKSKKFVSAVEEVLKS---EKPVIATVHR--PVVQ 142 (174)
T ss_pred CCCCCCE--EEEHHHHHHHHHHHHHHCC--CCCCEEEEECCCHHHHHHHHHHHHHHHHHCC---CCCEEEEECH--HHHH
T ss_conf 8554566--8716897899899998353--5787999963103311049999999999738---9989999775--8889
Q ss_pred HHHCE-EEEEECCCCCHHHHHH
Q ss_conf 25203-6988647999899999
Q gi|254780217|r 176 TIRSR-CLSIKFNSLSENNLYK 196 (347)
Q Consensus 176 TI~SR-c~~i~f~~l~~~~~~~ 196 (347)
.||+| +..+.+.+-+.+.+.+
T Consensus 143 ~ik~~~~~v~~vT~~NRd~l~~ 164 (174)
T PRK13695 143 RIRSLGGEVFWLTPENRNILPE 164 (174)
T ss_pred HHHCCCCEEEEECHHHHHHHHH
T ss_conf 8633798999989346775599
No 195
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.003 Score=45.80 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECC
Q ss_conf 99999999999828898166311798988899999999998177998864312101267886799996789875453001
Q gi|254780217|r 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 (347)
Q Consensus 18 ~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~ 97 (347)
..+...+......=.-+-.++|+||+|+||+.+|-+++..+. .. | ..+.++..
T Consensus 89 ~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKthLa~Ai~~~l~-~~------------------------g--~sv~f~~~ 141 (254)
T COG1484 89 KKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KA------------------------G--ISVLFITA 141 (254)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH-HC------------------------C--CEEEEEEH
T ss_conf 999999999998732588289989999879999999999999-83------------------------9--84999885
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHCCCCC-------CCCCCHHHHHHHHHHCC--HHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 00010134212323788755443102221-------11121035322055424--0001456777663034341676504
Q gi|254780217|r 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTA-------NTGYWRVIMIDPVDGMN--RNAANALLKSLEEPPQKVLFILISH 168 (347)
Q Consensus 98 ~~~~k~~~~~~~I~vd~IR~l~~~~~~~~-------~~~~~Ki~IId~ad~ln--~~AaNALLK~LEEPp~~t~fiLit~ 168 (347)
.|=+++|........ ......+.||||.-..+ ...++-++-++..--.....|++|+
T Consensus 142 --------------~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN 207 (254)
T COG1484 142 --------------PDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSN 207 (254)
T ss_pred --------------HHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf --------------999999999874552689999887528989982367766881558799999999997305420205
Q ss_pred C
Q ss_conf 4
Q gi|254780217|r 169 A 169 (347)
Q Consensus 169 ~ 169 (347)
.
T Consensus 208 ~ 208 (254)
T COG1484 208 L 208 (254)
T ss_pred C
T ss_conf 8
No 196
>KOG0652 consensus
Probab=96.99 E-value=0.0057 Score=43.56 Aligned_cols=163 Identities=19% Similarity=0.149 Sum_probs=81.8
Q ss_pred CHHHHCCHHHHHHHHHHHHHC------------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC
Q ss_conf 565610929999999999982------------88981663117989888999999999981779988643121012678
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCS------------GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~------------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~ 77 (347)
..++|=|-+..++.|..++.- -+.|.+.|.|||||.||+.+|++.|..-....-.-.+|
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgP--------- 239 (424)
T KOG0652 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGP--------- 239 (424)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCH---------
T ss_conf 20003257899999998861456568788746888997227657999757799999987401068873264---------
Q ss_pred CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH-
Q ss_conf 8679999678987545300100010134212323788755443102221111210353220554240001456777663-
Q gi|254780217|r 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE- 156 (347)
Q Consensus 78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE- 156 (347)
-.-++-.|.-.-+ +.-++.-..++....|-||++-.+..+-.-+--.|. .+-|-.+|-.|-.
T Consensus 240 --QLVQMfIGdGAkL--VRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GD-------------REVQRTMLELLNQL 302 (424)
T KOG0652 240 --QLVQMFIGDGAKL--VRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGD-------------REVQRTMLELLNQL 302 (424)
T ss_pred --HHHHHHHCCHHHH--HHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCC-------------HHHHHHHHHHHHHC
T ss_conf --7776653341889--999998753349838997300232334365312343-------------89999999999860
Q ss_pred ----CCCCCCEEEEECCCCCCCHHHHCEE----EEEECCCCCHHHHHHHHH
Q ss_conf ----0343416765044335730252036----988647999899999999
Q gi|254780217|r 157 ----PPQKVLFILISHASPTILSTIRSRC----LSIKFNSLSENNLYKALE 199 (347)
Q Consensus 157 ----Pp~~t~fiLit~~~~~il~TI~SRc----~~i~f~~l~~~~~~~~L~ 199 (347)
|......|-.|+..+ ||.+-+=|. +++.|+-++++.-..+++
T Consensus 303 DGFss~~~vKviAATNRvD-iLDPALlRSGRLDRKIEfP~Pne~aRarIlQ 352 (424)
T KOG0652 303 DGFSSDDRVKVIAATNRVD-ILDPALLRSGRLDRKIEFPHPNEEARARILQ 352 (424)
T ss_pred CCCCCCCCEEEEEECCCCC-CCCHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 4899756267885216434-3488886446644443488997789889998
No 197
>KOG0730 consensus
Probab=96.96 E-value=0.015 Score=40.26 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=88.8
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCC
Q ss_conf 88981663117989888999999999981779988643121012678867999967898754530010001013421232
Q gi|254780217|r 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI 110 (347)
Q Consensus 31 ~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I 110 (347)
-+.|...|.|||||+||+.+++++|+.--|.--.-.+| ...++....+
T Consensus 215 ~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~p----------eli~k~~gEt---------------------- 262 (693)
T KOG0730 215 IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGP----------ELISKFPGET---------------------- 262 (693)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCH----------HHHHHCCCCH----------------------
T ss_conf 99998744438999981899999999737225740628----------9998524631----------------------
Q ss_pred CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH----------HHHHHHHHHHHHCC--CCCCEEEEECCCCCCCHHHH
Q ss_conf 3788755443102221111210353220554240----------00145677766303--43416765044335730252
Q gi|254780217|r 111 TVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR----------NAANALLKSLEEPP--QKVLFILISHASPTILSTIR 178 (347)
Q Consensus 111 ~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----------~AaNALLK~LEEPp--~~t~fiLit~~~~~il~TI~ 178 (347)
-...|..-+....... --++.||+.|.+-. ...-.||+.+.--+ .+++-+-.|++|+.|-|.+|
T Consensus 263 -e~~LR~~f~~a~k~~~---psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alR 338 (693)
T KOG0730 263 -ESNLRKAFAEALKFQV---PSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALR 338 (693)
T ss_pred -HHHHHHHHHHHHCCCC---CEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHH
T ss_conf -7789999999866599---807758767623776433324888999999999852767674699971588555685652
Q ss_pred C-EE-EEEECCCCCHHHHHHHH---HHHCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 0-36-98864799989999999---972788896789999997598978999
Q gi|254780217|r 179 S-RC-LSIKFNSLSENNLYKAL---EQLKIMGWDSKRDFVKIAAYGSVARAI 225 (347)
Q Consensus 179 S-Rc-~~i~f~~l~~~~~~~~L---~~~~~~~~~~~~~~~~~~s~Gs~~~A~ 225 (347)
- |- +.+-+.-|+.+.-.+++ .+.-...++.+...++..+.|-.|.-+
T Consensus 339 RgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL 390 (693)
T KOG0730 339 RGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADL 390 (693)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHH
T ss_conf 4788531574489833588999999861688725568999987346147879
No 198
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=96.93 E-value=0.0065 Score=43.11 Aligned_cols=155 Identities=17% Similarity=0.245 Sum_probs=78.8
Q ss_pred CHHHHCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH--CCCCCCCHHHHHHHC
Q ss_conf 565610929999999999982-88981663117989888999999999981779988643121--012678867999967
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM--CNPDPCSPFVKQMAS 86 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~--~~~~~~~~~~~~i~~ 86 (347)
....++|+-.+.+.+...+.. .+-.-..|++|++|+||..+|+++=. ...-...|.-. |..-+. ..+++
T Consensus 137 ~~~~liG~S~am~~v~~~i~~~A~s~~pVLI~GE~GTGK~~~Ar~IH~----~S~r~~~pfv~vnC~~l~~----~l~es 208 (441)
T PRK10365 137 SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA----SSARSEKPLVTLNCAALNE----SLLES 208 (441)
T ss_pred CCCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH----CCCCCCCCCEEEECCCCCH----HHHHH
T ss_conf 257866689999999999999848899489989998109999999996----5787789807987898984----55589
Q ss_pred CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC---------
Q ss_conf 89875453001000101342123237887554431022211112103532205542400014567776630---------
Q gi|254780217|r 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP--------- 157 (347)
Q Consensus 87 ~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP--------- 157 (347)
.++ . .+++ .. -+.+.-+ ...+.. ..|+ ..++|+++.|+...|-.||+.||+-
T Consensus 209 ----eLF--G---~~~g-af---tga~~~~--~g~~~~--A~gG--TLfLdeI~~l~~~~Q~kLl~~l~~~~~~~~g~~~ 269 (441)
T PRK10365 209 ----ELF--G---HEKG-AF---TGADKRR--EGRFVE--ADGG--TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQ 269 (441)
T ss_pred ----HHC--C---CCCC-CC---CCCCCCC--CCCEEE--CCCC--EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf ----861--7---7556-87---8965346--898778--8998--2550231529999999999877752100058873
Q ss_pred --CCCCCEEEEECCCC-------CCCHHHHCE--EEEEECCCCCH
Q ss_conf --34341676504433-------573025203--69886479998
Q gi|254780217|r 158 --PQKVLFILISHASP-------TILSTIRSR--CLSIKFNSLSE 191 (347)
Q Consensus 158 --p~~t~fiLit~~~~-------~il~TI~SR--c~~i~f~~l~~ 191 (347)
+-++.+|-.|+..- ...+-+.-| +..+.++||.+
T Consensus 270 ~~~~d~RiIaat~~~l~~~v~~g~Fr~dLy~rL~~~~i~lPpLRe 314 (441)
T PRK10365 270 TISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQ 314 (441)
T ss_pred EEECCCEEEECCCCCHHHHHHCCCCHHHHHHHHCCHHCCCCCCCC
T ss_conf 441363799837889999988198258999886011137826000
No 199
>KOG0478 consensus
Probab=96.93 E-value=0.0055 Score=43.68 Aligned_cols=140 Identities=19% Similarity=0.207 Sum_probs=80.3
Q ss_pred HHCCHHHHHHHHHHHHHCCC---CCE--------EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 61092999999999998288---981--------6631179898889999999999817799886431210126788679
Q gi|254780217|r 13 RLFGHEDIEKFLSQYYCSGR---MHH--------ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 (347)
Q Consensus 13 ~i~G~~~~~~~L~~~~~~~~---l~h--------a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~ 81 (347)
.|+||++++.-|.=.+-.|+ +.+ .+|+.|.||+||+.+-...++ |+-. +-+.-|.-++
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~-l~pR---g~yTSGkGsS------- 498 (804)
T KOG0478 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHR-LLPR---GVYTSGKGSS------- 498 (804)
T ss_pred HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH-HCCC---CEEECCCCCC-------
T ss_conf 6534422666677887568763223344424552289946998678999999997-4775---4040587630-------
Q ss_pred HHHHCCCCCCEE-EECCCCHHHCCCCCCCCCHHHHHHHH-HHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC--
Q ss_conf 999678987545-30010001013421232378875544-31022211112103532205542400014567776630--
Q gi|254780217|r 82 KQMASHALHDFL-YLSYSLNPKTGKWRTVITVDEIRRIR-YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP-- 157 (347)
Q Consensus 82 ~~i~~~~hpd~~-~i~~~~~~k~~~~~~~I~vd~IR~l~-~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP-- 157 (347)
-..+- ++.+ |+ +-|+++ +.-.+- .++.-||=||+.|+|+.++.+-|+-.||--
T Consensus 499 -------avGLTayVtr--d~------------dtkqlVLesGALV--LSD~GiCCIDEFDKM~dStrSvLhEvMEQQTv 555 (804)
T KOG0478 499 -------AVGLTAYVTK--DP------------DTRQLVLESGALV--LSDNGICCIDEFDKMSDSTRSVLHEVMEQQTL 555 (804)
T ss_pred -------HHCCEEEEEE--CC------------CCCEEEEECCCEE--ECCCCEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------2200356776--57------------6554665048489--72896577112333327788999999987631
Q ss_pred -----------CCCCCEEEEECCCC--------------CCCHHHHCEEEEEECC
Q ss_conf -----------34341676504433--------------5730252036988647
Q gi|254780217|r 158 -----------PQKVLFILISHASP--------------TILSTIRSRCLSIKFN 187 (347)
Q Consensus 158 -----------p~~t~fiLit~~~~--------------~il~TI~SRc~~i~f~ 187 (347)
+..|= ||.|-||. .|+||++||.-.+.+-
T Consensus 556 SIAKAGII~sLNAR~S-VLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIyll 609 (804)
T KOG0478 556 SIAKAGIIASLNARCS-VLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLL 609 (804)
T ss_pred HHHHCCEEEECCCCCE-EEEEECCCCCCCCCCCCHHHCCCCCHHHHHHHCEEEEE
T ss_conf 1743022342166530-34453543245799976232167880564323378998
No 200
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.86 E-value=0.0075 Score=42.63 Aligned_cols=112 Identities=15% Similarity=0.210 Sum_probs=68.6
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCE
Q ss_conf 61092999999999998288981663117989888999999999981779988643121012678867999967898754
Q gi|254780217|r 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 (347)
Q Consensus 13 ~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~ 92 (347)
-++.-+++++...-+.-+|. | .++.||||+||+.+|++++..+- .. +-....+..-+.|+=
T Consensus 21 gl~ERe~~i~l~lLaalage--h-vlllGPPGtAKS~larrl~~~~~-~a---------------~~FeyLltRFstPeE 81 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--S-VFLLGPPGIAKSLIARRLKFAFQ-HA---------------RAFEYLMTRFSTPEE 81 (498)
T ss_pred HHHHHHHHHHHHHHHHHCCC--C-EEEECCCCHHHHHHHHHHHHHHC-CC---------------HHHHHHHHCCCCHHH
T ss_conf 11446999999999997289--4-69888995138899999999855-74---------------089999874698888
Q ss_pred EEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 5300100010134212323788755443102221-111210353220554240001456777663
Q gi|254780217|r 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTA-NTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 93 ~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~-~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
++= .++|...|+=......+. ....--|+++|++=+-|.+..|+||-+|-|
T Consensus 82 lFG-------------P~si~~Lk~~g~y~R~t~G~LP~A~iaFLDEIfKansAILNtLLtilNE 133 (498)
T PRK13531 82 VFG-------------PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINE 133 (498)
T ss_pred HCC-------------CCCHHHHHHCCEEEEECCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 538-------------3329987117848972267588661315787861488999999998646
No 201
>PRK06526 transposase; Provisional
Probab=96.85 E-value=0.0026 Score=46.32 Aligned_cols=118 Identities=15% Similarity=0.214 Sum_probs=68.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
++.++|.||+|+||+.+|.+++... |..+ - .+.++.... -++
T Consensus 98 ~~Nvil~G~~GtGKThLA~Alg~~A-~~~G------------------------~--~v~f~~~~~-----------L~~ 139 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA-CQAG------------------------H--RVLFATAAQ-----------WVA 139 (254)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-HHCC------------------------C--CEEEEEHHH-----------HHH
T ss_conf 8878998999986899999999999-9869------------------------9--679987799-----------999
Q ss_pred HHHHHHHHCCC---CCCCCCCHHHHHHHHHH--CCHHHHHHHHHHHHHCCCCCCEEEEECCCC--------------CCC
Q ss_conf 87554431022---21111210353220554--240001456777663034341676504433--------------573
Q gi|254780217|r 114 EIRRIRYFLSL---TANTGYWRVIMIDPVDG--MNRNAANALLKSLEEPPQKVLFILISHASP--------------TIL 174 (347)
Q Consensus 114 ~IR~l~~~~~~---~~~~~~~Ki~IId~ad~--ln~~AaNALLK~LEEPp~~t~fiLit~~~~--------------~il 174 (347)
+.......-.+ -....+..+.|||+.-. ++...++.|..++++=-+..=.|++|+.+- .|+
T Consensus 140 ~L~~a~~~g~~~~~~~~l~~~dLLIiDe~g~~~~~~~~a~~lf~li~~Rye~~S~IiTSn~~~~~W~~~f~D~~la~Ail 219 (254)
T PRK06526 140 RLAAAHHAGRLQDELVKLGRIPLLIVDEVGYIPFEAEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMI 219 (254)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCHHHHHHHH
T ss_conf 99998855809999998513687765021364478899999999999997458867665898668888648689999999
Q ss_pred HHHHCEEEEEECCCC
Q ss_conf 025203698864799
Q gi|254780217|r 175 STIRSRCLSIKFNSL 189 (347)
Q Consensus 175 ~TI~SRc~~i~f~~l 189 (347)
.=|.-+|..+.+...
T Consensus 220 DRL~H~a~~i~~~G~ 234 (254)
T PRK06526 220 DRLVHHAEVISLKGD 234 (254)
T ss_pred HHHCCCEEEEEECCC
T ss_conf 986256289984388
No 202
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.85 E-value=0.0016 Score=48.06 Aligned_cols=127 Identities=16% Similarity=0.243 Sum_probs=67.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCC------CCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCC
Q ss_conf 1663117989888999999999981779988------6431210126788679999678987545300100010134212
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFS------KAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRT 108 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~------~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~ 108 (347)
.--+++|-||+||||++..+...++...... ..|.|. ...++....+-.+-.+.. .+ ..+.
T Consensus 163 ~~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaAPTGK--------AAaRL~Esi~~~~~~l~~--~~---~~~~ 229 (607)
T PRK10875 163 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGK--------AAARLTESLGKALRQLPL--TD---EQKK 229 (607)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH--------HHHHHHHHHHHHHHHCCC--CH---HHHH
T ss_conf 7789967999877889999999999964589970899882289--------999999999878753476--65---6663
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCC----------HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEE-------CCCC
Q ss_conf 32378875544310222111121----------035322055424000145677766303434167650-------4433
Q gi|254780217|r 109 VITVDEIRRIRYFLSLTANTGYW----------RVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS-------HASP 171 (347)
Q Consensus 109 ~I~vd~IR~l~~~~~~~~~~~~~----------Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit-------~~~~ 171 (347)
.|. ++..-|.+.+...|...++ -|+|||||-++...-..+||+-| |+++.+||+= =.+.
T Consensus 230 ~~p-~~a~TiHRLLg~~p~~~~f~~~~~nPL~~DvlIVDEASMVDl~Lm~~LL~Al---p~~aRLILvGD~dQLpSVgaG 305 (607)
T PRK10875 230 RIP-EDASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDRDQLASVEAG 305 (607)
T ss_pred CCC-CCCEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC---CCCCEEEEECCHHHCCCCCCC
T ss_conf 376-5566589752967898765657799998898999073366599999999828---999889996562324788888
Q ss_pred CCCHHHH
Q ss_conf 5730252
Q gi|254780217|r 172 TILSTIR 178 (347)
Q Consensus 172 ~il~TI~ 178 (347)
.++.-|.
T Consensus 306 aVL~DL~ 312 (607)
T PRK10875 306 AVLGDIC 312 (607)
T ss_pred CCHHHHH
T ss_conf 2179999
No 203
>KOG0727 consensus
Probab=96.84 E-value=0.0033 Score=45.45 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=75.8
Q ss_pred CHHHHCCHHHHHHHHHHHHHC------------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC------CHHH
Q ss_conf 565610929999999999982------------8898166311798988899999999998177998864------3121
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCS------------GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKA------PVRM 71 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~------------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~------~~~~ 71 (347)
+..+|=|-+-.++....+..- =..|.+.|+|||||+||+.+|.+.|..--....--.+ ..|+
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylge 232 (408)
T KOG0727 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 232 (408)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCHHEEEECCHHHHHHHHCC
T ss_conf 41345662112899998883653078899970889986227757999757899999861261114463018999998554
Q ss_pred CCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHH--HHCCCCCCCCCCHHHHHHHHHHCCHHHHHH
Q ss_conf 012678867999967898754530010001013421232378875544--310222111121035322055424000145
Q gi|254780217|r 72 CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR--YFLSLTANTGYWRVIMIDPVDGMNRNAANA 149 (347)
Q Consensus 72 ~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~--~~~~~~~~~~~~Ki~IId~ad~ln~~AaNA 149 (347)
- +-.. +..-+++..+.|.+++ ||+|-.+- .|=..+...- +-|-.
T Consensus 233 g-prmv-rdvfrlakenapsiif-----------------ideidaiatkrfdaqtgadr---------------evqri 278 (408)
T KOG0727 233 G-PRMV-RDVFRLAKENAPSIIF-----------------IDEIDAIATKRFDAQTGADR---------------EVQRI 278 (408)
T ss_pred C-CHHH-HHHHHHHHCCCCCEEE-----------------EEHHHHHHHHHCCCCCCCCH---------------HHHHH
T ss_conf 8-3899-9999987616983798-----------------62245676641244446318---------------99999
Q ss_pred HHHHHH-----HCCCCCCEEEEECCCCCCCHHHHCEE---EEEECCCCCHHHH
Q ss_conf 677766-----30343416765044335730252036---9886479998999
Q gi|254780217|r 150 LLKSLE-----EPPQKVLFILISHASPTILSTIRSRC---LSIKFNSLSENNL 194 (347)
Q Consensus 150 LLK~LE-----EPp~~t~fiLit~~~~~il~TI~SRc---~~i~f~~l~~~~~ 194 (347)
|+..|- ++..|+..|+.|+..+.+-|.+.--- +++.|+-++..+-
T Consensus 279 l~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqk 331 (408)
T KOG0727 279 LIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 331 (408)
T ss_pred HHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 99999751476766655899832755566876628764344435779854665
No 204
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=96.78 E-value=0.0021 Score=47.13 Aligned_cols=71 Identities=17% Similarity=0.357 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCHHH-------------HHHHHHHHHHCCCCCCEEE--------E------ECCCCCCCHHHHCEE-EEE
Q ss_conf 35322055424000-------------1456777663034341676--------5------044335730252036-988
Q gi|254780217|r 133 VIMIDPVDGMNRNA-------------ANALLKSLEEPPQKVLFIL--------I------SHASPTILSTIRSRC-LSI 184 (347)
Q Consensus 133 i~IId~ad~ln~~A-------------aNALLK~LEEPp~~t~fiL--------i------t~~~~~il~TI~SRc-~~i 184 (347)
|++||++|..-..+ |-=||-++|--.=+|..=. | -..|+.|+|=+.=|- .++
T Consensus 271 iiFIDEIDKIa~~~~e~S~~DvSrEGVQRDlLPiVEGS~V~TKyG~VkTdHiLFIAaGAF~lAKPSDLIPELQGRfPirV 350 (463)
T TIGR00390 271 IIFIDEIDKIAKKGKESSGADVSREGVQRDLLPIVEGSTVNTKYGSVKTDHILFIAAGAFHLAKPSDLIPELQGRFPIRV 350 (463)
T ss_pred CEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCHHHHHHHHHHCCCCCCCCCCHHHCCCCHHH
T ss_conf 28985303542168886788876556510114202266643100104221578767523202777666631106673778
Q ss_pred ECCCCCHHHHHHHHHHHCC
Q ss_conf 6479998999999997278
Q gi|254780217|r 185 KFNSLSENNLYKALEQLKI 203 (347)
Q Consensus 185 ~f~~l~~~~~~~~L~~~~~ 203 (347)
-+..|+.+++..+|.+-..
T Consensus 351 EL~~Lt~~d~~rIL~~p~~ 369 (463)
T TIGR00390 351 ELEALTVDDFERILTEPKN 369 (463)
T ss_pred HHHHHHHHHHHHHHCCCCH
T ss_conf 7676329999996208343
No 205
>KOG0651 consensus
Probab=96.77 E-value=0.0088 Score=42.05 Aligned_cols=55 Identities=20% Similarity=0.076 Sum_probs=43.6
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHC------------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 587565610929999999999982------------8898166311798988899999999998177
Q gi|254780217|r 7 DPVYNQRLFGHEDIEKFLSQYYCS------------GRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 7 ~p~~~~~i~G~~~~~~~L~~~~~~------------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
|--+|+.+-|--.+...|...+.- =+.|-..++|||||.||+-+|++.|..+=|+
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CCCCHHHHCCHHHHHHHHHHHEEEECCCCHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 5467877178388889988655740248100234577788256876799986459999999865985
No 206
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.02 Score=39.16 Aligned_cols=192 Identities=18% Similarity=0.177 Sum_probs=108.9
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC---CHHHHHH
Q ss_conf 8756561092999999999998288981663117989888999999999981779988643121012678---8679999
Q gi|254780217|r 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC---SPFVKQM 84 (347)
Q Consensus 8 p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~---~~~~~~i 84 (347)
|..+..---|.+++..+...+..++.= ...+|+-|.||+.+.++++..+.- +..|...-+++. .-.|..+
T Consensus 27 ~~~~~~~a~h~e~l~~l~~~i~d~qg~--~~vtGevGsGKTv~~Ral~~s~~~-----d~~~~v~i~~~~~s~~~~~~ai 99 (269)
T COG3267 27 PGLDYWAADHNEALLMLHAAIADGQGI--LAVTGEVGSGKTVLRRALLASLNE-----DQVAVVVIDKPTLSDATLLEAI 99 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCE--EEEEECCCCCHHHHHHHHHHHCCC-----CCEEEEEECCCCHHHHHHHHHH
T ss_conf 666643200159999977777517855--999744777636999999985578-----8517998357630178899999
Q ss_pred -HCCCCCCEEEECCCCHHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCC-HHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf -67898754530010001013421232378-875544310222111121-035322055424000145677766303434
Q gi|254780217|r 85 -ASHALHDFLYLSYSLNPKTGKWRTVITVD-EIRRIRYFLSLTANTGYW-RVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 (347)
Q Consensus 85 -~~~~hpd~~~i~~~~~~k~~~~~~~I~vd-~IR~l~~~~~~~~~~~~~-Ki~IId~ad~ln~~AaNALLK~LEEPp~~t 161 (347)
...+ .++ +.+ +. .++.+-+++..---.|++ -+.++|+||.++.++--+|.-..|=--+.+
T Consensus 100 ~~~l~----------~~p-----~~~--~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~ 162 (269)
T COG3267 100 VADLE----------SQP-----KVN--VNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSS 162 (269)
T ss_pred HHHHC----------CCC-----CCH--HHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCHHHHHHHHHHHHHCCCCC
T ss_conf 99840----------583-----200--6889999999999999817887378501676617548999999886203466
Q ss_pred CE--EEEECCCCCC-------CHHHHCEEEE-EECCCCCHHHHHHHHHHH-------CCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 16--7650443357-------3025203698-864799989999999972-------7888967899999975989789
Q gi|254780217|r 162 LF--ILISHASPTI-------LSTIRSRCLS-IKFNSLSENNLYKALEQL-------KIMGWDSKRDFVKIAAYGSVAR 223 (347)
Q Consensus 162 ~f--iLit~~~~~i-------l~TI~SRc~~-i~f~~l~~~~~~~~L~~~-------~~~~~~~~~~~~~~~s~Gs~~~ 223 (347)
-- |+..-+|.-- +.-+.=||.. +.++|++.++...+|... ..-..++...++...+.|-|+.
T Consensus 163 ~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~l 241 (269)
T COG3267 163 KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRL 241 (269)
T ss_pred CCEEEEECCCCCCCHHHCHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHH
T ss_conf 7211455078011435442889854316778995388674789999999985058996667705789999985255489
No 207
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.75 E-value=0.0081 Score=42.35 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=29.4
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 828898166311798988899999999998177
Q gi|254780217|r 29 CSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 29 ~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
.++.-||-+++.|+.|+||+|.|..+|+.+-|.
T Consensus 3 ~~~~~~~iiVVMGVsGsGKSTig~~LA~~l~~~ 35 (177)
T PRK11545 3 TTNHDHHIYVLMGVSGSGKSAVASAVAHQLHAA 35 (177)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 567887599998479899999999999981998
No 208
>KOG1514 consensus
Probab=96.75 E-value=0.076 Score=34.53 Aligned_cols=187 Identities=18% Similarity=0.261 Sum_probs=103.8
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCC
Q ss_conf 99999999982889816631179898889999999999817799886431210126788679999678987545300100
Q gi|254780217|r 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSL 99 (347)
Q Consensus 20 ~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~ 99 (347)
+...+..++...-..-.+-++|-||+||+.+.+...+.|... ...+.-|.+.+++...
T Consensus 408 I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~----------------------s~~~e~p~f~yveINg 465 (767)
T KOG1514 408 IEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTS----------------------SAQKELPKFDYVEING 465 (767)
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHH----------------------HHHCCCCCCCEEEECC
T ss_conf 999999762777774079984699988321299999999987----------------------7505789860798714
Q ss_pred HHHC------CCCCCCCCH-----HHHHH-HHHHCCCCCCC-CCCHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCCEEE
Q ss_conf 0101------342123237-----88755-44310222111-121035322055424000145677766303-4341676
Q gi|254780217|r 100 NPKT------GKWRTVITV-----DEIRR-IRYFLSLTANT-GYWRVIMIDPVDGMNRNAANALLKSLEEPP-QKVLFIL 165 (347)
Q Consensus 100 ~~k~------~~~~~~I~v-----d~IR~-l~~~~~~~~~~-~~~Ki~IId~ad~ln~~AaNALLK~LEEPp-~~t~fiL 165 (347)
..-. +..-..++. +.--+ +...+. .|-. -.--|++||+.|.|-.-.|--|--+++=|. +++..++
T Consensus 466 m~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~-~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514 466 LRLASPREIYEKIWEALSGERVTWDAALEALNFRFT-VPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred EEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC-CCCCCCCCEEEEECCHHHHHCCCHHHHHHHHCCCCCCCCCEEE
T ss_conf 461588999999999755574307788999986541-6787878779996357877352098897774077678986699
Q ss_pred E--ECC---CCCCCH-HHHCEE--EEEECCCCCHHHHHHHHHHHCCCC---CHHHHHHHH---HHCCCCHHHHHHHHC
Q ss_conf 5--044---335730-252036--988647999899999999727888---967899999---975989789998814
Q gi|254780217|r 166 I--SHA---SPTILS-TIRSRC--LSIKFNSLSENNLYKALEQLKIMG---WDSKRDFVK---IAAYGSVARAIKILH 229 (347)
Q Consensus 166 i--t~~---~~~il~-TI~SRc--~~i~f~~l~~~~~~~~L~~~~~~~---~~~~~~~~~---~~s~Gs~~~A~~ll~ 229 (347)
+ ++. |++++. -+-||- +++.|.|-+..++.+++..-.... ...+.++++ ..--|+.++|+.+..
T Consensus 545 i~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514 545 IAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred EEECCCCCCHHHHHCCCHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 995165647798854311233065055137788999999999860315431424899999887750422788889989
No 209
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=96.75 E-value=0.0045 Score=44.39 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=53.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
++.++|+||+|+||+-+|.+++..+. ..+. .+.++..+. -++
T Consensus 47 ~~Nlll~G~~GtGKThLA~Ai~~~~~-~~g~--------------------------~v~f~~~~~-----------L~~ 88 (178)
T pfam01695 47 AENLLLLGPPGVGKTHLACALGHQAC-RAGY--------------------------SVLFTRTPD-----------LVE 88 (178)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH-HCCC--------------------------EEEEEECHH-----------HHH
T ss_conf 87689989999878999999999999-8698--------------------------599996167-----------999
Q ss_pred HHHHHHHHCCC---CCCCCCCHHHHHHHHHH--CCHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 87554431022---21111210353220554--2400014567776630343416765044
Q gi|254780217|r 114 EIRRIRYFLSL---TANTGYWRVIMIDPVDG--MNRNAANALLKSLEEPPQKVLFILISHA 169 (347)
Q Consensus 114 ~IR~l~~~~~~---~~~~~~~Ki~IId~ad~--ln~~AaNALLK~LEEPp~~t~fiLit~~ 169 (347)
++|.-...-.. -....+.-+.|||+.-. ++..++.-|..++++=-++.-.|++||.
T Consensus 89 ~l~~~~~~~~~~~~l~~~~~~dlLIiDDlG~~~~s~~~~~~lf~li~~Rye~~stIiTSN~ 149 (178)
T pfam01695 89 QLKRARGDGRLARTLQRLAKADLLILDDIGYLPLSQEAAHLLFELISDRYERRSTILTSNL 149 (178)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9998752674999999962589788720016568989999999999999756886877689
No 210
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=96.73 E-value=0.0014 Score=48.44 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.3
Q ss_pred EEECCCCCCCHHHHHHHHHHHH
Q ss_conf 6311798988899999999998
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+.++||||+||||.|..+|+.|
T Consensus 3 I~ISGpPGSGktTvA~~lA~~L 24 (173)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8873589686478999999863
No 211
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=96.72 E-value=0.002 Score=47.27 Aligned_cols=115 Identities=23% Similarity=0.326 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH-----HCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEE
Q ss_conf 9999999999828898166311798988899999999998-----17799886431210126788679999678987545
Q gi|254780217|r 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-----LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 (347)
Q Consensus 19 ~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l-----lc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~ 93 (347)
++...-.+.+++|+-=| |.||-|+|||++|+++|+.+ +-..+..-..-+.- |+...+.
T Consensus 9 ~v~~R~l~yL~~G~PvH---l~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLv--------------G~~~g~~ 71 (265)
T TIGR02640 9 RVTSRALRYLKSGYPVH---LRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLV--------------GSYAGYT 71 (265)
T ss_pred HHHHHHHHHHCCCCCEE---EECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC--------------CCCCCCE
T ss_conf 99998766322788667---447888556899999997368968998658232654423--------------1546752
Q ss_pred EECCCCHHHCCCCCCCCCHH-HHH--HHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 30010001013421232378-875--5443102221111210353220554240001456777663
Q gi|254780217|r 94 YLSYSLNPKTGKWRTVITVD-EIR--RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 94 ~i~~~~~~k~~~~~~~I~vd-~IR--~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
... ..| +-...+.+-| +++ +.=+.+.+.--+|- -.|-||--+=-..+-|-||=.+||
T Consensus 72 ~~k-v~D---qfihnV~K~~d~~~~~W~D~rLt~Av~eG~--TLVYdEF~RskP~~nNVLLSvlEE 131 (265)
T TIGR02640 72 RKK-VVD---QFIHNVVKLEDIVRQNWVDNRLTLAVREGF--TLVYDEFTRSKPETNNVLLSVLEE 131 (265)
T ss_pred EEE-EEE---CCEEEEECCCCCCCCCCCCCHHHHHHHCCC--EEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 222-320---121113425122002667835789975697--276647578862045656755552
No 212
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.71 E-value=0.037 Score=37.04 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=17.9
Q ss_pred EEECCCCCCCHHHHHHHHHHH
Q ss_conf 631179898889999999999
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
++++||+|+||+|++..+.+.
T Consensus 4 ivl~GpsG~GK~tl~~~l~~~ 24 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899988999999999976
No 213
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.71 E-value=0.0034 Score=45.41 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=37.1
Q ss_pred CCCCCCCCCHHHH----CCHHHHHHH---HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 6655558756561----092999999---9999982889816631179898889999999999817
Q gi|254780217|r 2 IDRAFDPVYNQRL----FGHEDIEKF---LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 2 ~~~~~~p~~~~~i----~G~~~~~~~---L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
|..+|+-.+|+.. -||..+... ....+..+. . ++||+||+|+||+.+|-++|..|+.
T Consensus 59 I~~~~~~~~Feny~~~~~~q~~al~~a~~y~enf~~~~-~-gLlF~G~~GTGKThLA~aIan~Li~ 122 (242)
T PRK07952 59 IRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNI-A-SFIFSGKPGTGKNHLAAAICNELLL 122 (242)
T ss_pred CCHHHHCCEEECEECCCHHHHHHHHHHHHHHHHHCCCC-C-EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98577288421201587778999999999998654388-7-1799789999789999999999998
No 214
>PRK08181 transposase; Validated
Probab=96.70 E-value=0.0045 Score=44.40 Aligned_cols=118 Identities=14% Similarity=0.194 Sum_probs=69.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHH
Q ss_conf 16631179898889999999999817799886431210126788679999678987545300100010134212323788
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~ 114 (347)
..++|.||+|+||+.+|.+++.... . .|- .+.++...- -+++
T Consensus 107 ~Nvil~Gp~GtGKThLA~Alg~~A~-~------------------------~G~--~V~f~~~~~-----------L~~~ 148 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALI-E------------------------NGW--RVLFTRTTD-----------LVQK 148 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH-H------------------------CCC--EEEEEEHHH-----------HHHH
T ss_conf 7089989999878899999999999-8------------------------799--399978999-----------9999
Q ss_pred HHHHHHHCC---CCCCCCCCHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCCCEEEEECCCC--------------CCCH
Q ss_conf 755443102---2211112103532205542--40001456777663034341676504433--------------5730
Q gi|254780217|r 115 IRRIRYFLS---LTANTGYWRVIMIDPVDGM--NRNAANALLKSLEEPPQKVLFILISHASP--------------TILS 175 (347)
Q Consensus 115 IR~l~~~~~---~~~~~~~~Ki~IId~ad~l--n~~AaNALLK~LEEPp~~t~fiLit~~~~--------------~il~ 175 (347)
.+.....-. .-....++.+.||||.-.+ +.+.++.|..++++=-+..=.|++|+.+- .++.
T Consensus 149 L~~a~~~~~~~~~~~~l~~~dLLIiDe~G~~~~~~~~~~~lf~lI~~Rye~~S~IITSn~~~~~W~~~f~D~~la~AiLD 228 (269)
T PRK08181 149 LQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPDPAMTLAAVD 228 (269)
T ss_pred HHHHHHCCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 99977558399999997444601220105667998999999999999857888899889997788775386889999999
Q ss_pred HHHCEEEEEECCCCC
Q ss_conf 252036988647999
Q gi|254780217|r 176 TIRSRCLSIKFNSLS 190 (347)
Q Consensus 176 TI~SRc~~i~f~~l~ 190 (347)
=|.-+|..+.+..-|
T Consensus 229 RLvH~a~~i~l~GeS 243 (269)
T PRK08181 229 RLVHHATIFEMNVES 243 (269)
T ss_pred HHHCCEEEEEECCCC
T ss_conf 870152899755876
No 215
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.69 E-value=0.0067 Score=42.99 Aligned_cols=51 Identities=12% Similarity=0.244 Sum_probs=34.9
Q ss_pred CHHHHHHHH-HHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 103532205-54240001456777663034341676504433573025203698864
Q gi|254780217|r 131 WRVIMIDPV-DGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 131 ~Ki~IId~a-d~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
-+|+|+||| -.+.......+.+.|++--++...|.|||..+ ||+ .|-++-+
T Consensus 470 p~iliLDEaTSaLD~~tE~~i~~~l~~~~~~~T~i~IaHRls----ti~-~aD~I~v 521 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLS----ALT-EASEIIV 521 (569)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH----HHH-HCCEEEE
T ss_conf 998998087666899999999999999749998999715888----898-5998999
No 216
>PRK12377 putative replication protein; Provisional
Probab=96.68 E-value=0.0039 Score=44.92 Aligned_cols=122 Identities=10% Similarity=0.106 Sum_probs=62.7
Q ss_pred CCCHHHHC----CHHHHHHH---HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 87565610----92999999---999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 8 PVYNQRLF----GHEDIEKF---LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 8 p~~~~~i~----G~~~~~~~---L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
-.+|+..- ||..+... +...+.+ -+|.++|+||||+||+.+|.+++..+... +.
T Consensus 70 ~~~f~ny~~~~~~~~~a~~~a~~~~~~F~~--~~~NlIf~G~pGtGKTHLA~AIg~~a~~~-G~---------------- 130 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK-GR---------------- 130 (248)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CC----------------
T ss_conf 386345645787899999999999998731--88608998999987889999999999987-99----------------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHC-C---CCCCCCCCHHHHHHHHH--HCCHHHHHHHHHHH
Q ss_conf 999967898754530010001013421232378875544310-2---22111121035322055--42400014567776
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFL-S---LTANTGYWRVIMIDPVD--GMNRNAANALLKSL 154 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~-~---~~~~~~~~Ki~IId~ad--~ln~~AaNALLK~L 154 (347)
.+.++..+. -++++++-...- . +--...+..+.||||.- .++..+++-|-.++
T Consensus 131 ----------sVlF~t~~d-----------Lv~~L~~a~~~g~~~~k~l~~l~~~dLLIIDElG~~~~s~~~~~llfqlI 189 (248)
T PRK12377 131 ----------SVIVVTVPD-----------VMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQII 189 (248)
T ss_pred ----------EEEEEEHHH-----------HHHHHHHHHHCCCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHH
T ss_conf ----------699988999-----------99999999984850999999973389898600057889867999999999
Q ss_pred HHC-CCCCCEEEEECC
Q ss_conf 630-343416765044
Q gi|254780217|r 155 EEP-PQKVLFILISHA 169 (347)
Q Consensus 155 EEP-p~~t~fiLit~~ 169 (347)
.+= -...-.|++||-
T Consensus 190 ~~Ry~~~ks~IiTTNL 205 (248)
T PRK12377 190 DRRTASMRSVGMLTNL 205 (248)
T ss_pred HHHHHCCCCEEEECCC
T ss_conf 9998557986897589
No 217
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.65 E-value=0.0057 Score=43.60 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=41.5
Q ss_pred CCCCCCCHH-HHCCHHHHHHHHHHHHHC----CC-CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 555587565-610929999999999982----88-9816631179898889999999999817
Q gi|254780217|r 4 RAFDPVYNQ-RLFGHEDIEKFLSQYYCS----GR-MHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 4 ~~~~p~~~~-~i~G~~~~~~~L~~~~~~----~~-l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
..+|-+.|+ +++|.++.++.+.+.+++ +. =-..++|+||+|.||++++..+-+.+=.
T Consensus 42 ~i~ry~~F~d~~fG~e~~i~~~V~~~k~AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE~ 104 (361)
T smart00763 42 GIKRYRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred EEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 078550110131164899999999999998446712569999889988779999999999998
No 218
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=96.65 E-value=0.0035 Score=45.28 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCC-HHHCCCCCCCHHHHHHH---CCCCCC
Q ss_conf 92999999999998288981663117989888999999999981779988643-12101267886799996---789875
Q gi|254780217|r 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP-VRMCNPDPCSPFVKQMA---SHALHD 91 (347)
Q Consensus 16 G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~-~~~~~~~~~~~~~~~i~---~~~hpd 91 (347)
|+|.+.-....++++ .+ .|++|-||+|||||+.++-..|.......+.| ...--..|-.+...++. ...-.+
T Consensus 228 ~~D~Q~~a~~~aL~~-~f---~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~ 303 (753)
T TIGR01447 228 VTDWQKVAVALALKS-NF---SLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKK 303 (753)
T ss_pred HHHHHHHHHHHHHHC-CE---EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 137999999998608-76---89987988977899999999999989864997404788668447999999999988632
Q ss_pred EEEECCCCHHHCCCCCCCCCHHHHHHHHH-HC-CCCCCCC------CCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC-
Q ss_conf 45300100010134212323788755443-10-2221111------210353220554240001456777663034341-
Q gi|254780217|r 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRY-FL-SLTANTG------YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVL- 162 (347)
Q Consensus 92 ~~~i~~~~~~k~~~~~~~I~vd~IR~l~~-~~-~~~~~~~------~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~- 162 (347)
+..-....+++. ...-.+.+..|-.+.. .. ....+.. ..=|+|||||-+++..= |.|.++==|++|.
T Consensus 304 L~~~~~aid~~~-~~~~~~~~~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaSMVdl~l---m~kL~~A~~~~~k~ 379 (753)
T TIGR01447 304 LAAENMAIDEDL-IAALPSEATTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEASMVDLPL---MAKLLKALPPNTKD 379 (753)
T ss_pred HHHHCCCCCHHH-HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCHHH---HHHHHHHCCCCCCC
T ss_conf 234236658798-54872045688886166147876776777788985527870600226799---99999722630013
Q ss_pred -------EEEEE
Q ss_conf -------67650
Q gi|254780217|r 163 -------FILIS 167 (347)
Q Consensus 163 -------fiLit 167 (347)
.||+=
T Consensus 380 ~KLy~~~LIllG 391 (753)
T TIGR01447 380 KKLYADRLILLG 391 (753)
T ss_pred CCHHHCCCCEEC
T ss_conf 201010200122
No 219
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.63 E-value=0.0033 Score=45.46 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=37.7
Q ss_pred CCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 21035322055-4240001456777663034341676504433573025203698864
Q gi|254780217|r 130 YWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 130 ~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
..+|+|+||+- .|...+...+.+.|.+-.++...|+|||+.+ |++ .|-++-+
T Consensus 157 ~~~ililDE~tsaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~----~l~-~~D~Iiv 209 (238)
T cd03249 157 NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLS----TIR-NADLIAV 209 (238)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHH----HHH-HCCEEEE
T ss_conf 9999999787667899999999999999809998999848888----998-5999999
No 220
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.63 E-value=0.031 Score=37.69 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=18.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHH
Q ss_conf 6631179898889999999999
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
-++++||+|+||+|++..+.+.
T Consensus 9 livisGPSG~GK~tl~~~L~~~ 30 (208)
T PRK00300 9 LIVLSAPSGAGKSTLVRALLER 30 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999999988999999999972
No 221
>PRK08116 hypothetical protein; Validated
Probab=96.62 E-value=0.0039 Score=44.89 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=37.4
Q ss_pred CCCCCCCCCHHHH---CCHHHHHHH---HHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 6655558756561---092999999---999998-2889816631179898889999999999817
Q gi|254780217|r 2 IDRAFDPVYNQRL---FGHEDIEKF---LSQYYC-SGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 2 ~~~~~~p~~~~~i---~G~~~~~~~---L~~~~~-~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
+..+++-.+|+.. -|++.+.+. ..+.|. .+.-+.+++|+|++|+||+-+|.++|..++.
T Consensus 69 i~~~f~~~tFeN~~~~~~~~~a~~~a~~Y~~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~~ 134 (262)
T PRK08116 69 LDEKFRNSTFENWLFRKGSEKAYKVAVKYVKKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELIE 134 (262)
T ss_pred CCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 998898192225568952599999999999989873646861899898999899999999999998
No 222
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I; InterPro: IPR011775 This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll . This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. It is also found in certain archaea not known to make chlorins.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0006779 porphyrin biosynthetic process.
Probab=96.61 E-value=0.0026 Score=46.27 Aligned_cols=194 Identities=14% Similarity=0.156 Sum_probs=106.4
Q ss_pred HHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC---CCCHHHHHHHCC
Q ss_conf 65610929999999999982889816631179898889999999999817799886431210126---788679999678
Q gi|254780217|r 11 NQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD---PCSPFVKQMASH 87 (347)
Q Consensus 11 ~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~---~~~~~~~~i~~~ 87 (347)
|+-|+||++.+..|.=..-.-++.- .|+.|.+|+||+|+.+++|..|=-=..-.+.|.+ |+++ ..++.|+...+.
T Consensus 3 F~AIVGQ~emKlAllL~vidP~IGG-VmvmGdRGTgKSTavRALAalLP~IkaVagcP~n-~~Ps~~~~~c~e~r~~~~~ 80 (340)
T TIGR02030 3 FSAIVGQEEMKLALLLTVIDPKIGG-VMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFN-SAPSDREELCEEVRILEDS 80 (340)
T ss_pred CEEEECHHHHHHHHHHEEECCCCCE-EEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCC-CCCCCCCCCCHHHHHHHHC
T ss_conf 3156416888777752000688562-8886778983568999999749940786176878-8888861357677775312
Q ss_pred ----CCCCEEEECCCCHH--HCCCCCCCCCHHHH-HHHHHHCCCCCCC------CCCHHHHHHHHHHCCH-------HHH
Q ss_conf ----98754530010001--01342123237887-5544310222111------1210353220554240-------001
Q gi|254780217|r 88 ----ALHDFLYLSYSLNP--KTGKWRTVITVDEI-RRIRYFLSLTANT------GYWRVIMIDPVDGMNR-------NAA 147 (347)
Q Consensus 88 ----~hpd~~~i~~~~~~--k~~~~~~~I~vd~I-R~l~~~~~~~~~~------~~~Ki~IId~ad~ln~-------~Aa 147 (347)
..|-++....+.-+ =+-..=.+.+-=|| |.|.+-. ++|+ ..+=+.-|||+-.|.. ++|
T Consensus 81 ~Gkt~~~~~i~~pvpvVDLPLGaTEDRVcGtlDIerALt~Gv--kAFePGLLArANRG~LYiDEVNLLeDHlVDvLLDvA 158 (340)
T TIGR02030 81 SGKTKKLAVIEKPVPVVDLPLGATEDRVCGTLDIERALTEGV--KAFEPGLLARANRGYLYIDEVNLLEDHLVDVLLDVA 158 (340)
T ss_pred CCCCCCCEEEECCCCEEECCCCCCCCCEECHHHHHHHHHCCC--CCCCCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHC
T ss_conf 686567515515765364798862131344024767750472--103663046661784255210001245665665220
Q ss_pred HHHHHHHH-------HCCCCCCEEEE-ECCCC--CCCHHHHCEE-EEEECCCCCHHHH-HHHHHHHCCCCCHHHHHH
Q ss_conf 45677766-------30343416765-04433--5730252036-9886479998999-999997278889678999
Q gi|254780217|r 148 NALLKSLE-------EPPQKVLFILI-SHASP--TILSTIRSRC-LSIKFNSLSENNL-YKALEQLKIMGWDSKRDF 212 (347)
Q Consensus 148 NALLK~LE-------EPp~~t~fiLi-t~~~~--~il~TI~SRc-~~i~f~~l~~~~~-~~~L~~~~~~~~~~~~~~ 212 (347)
.+=--+.| =| ..|+|+ |-||+ .|=|=++-|- .+..++.+.+-+. .+++++ ..+++.+...+
T Consensus 159 asG~NvVEREG~SiRHP---ARFVLVGSGNPEEGeLRPQLLDRFGlhaeirt~rdve~RVeiv~r-R~eyDadp~aF 231 (340)
T TIGR02030 159 ASGVNVVEREGVSIRHP---ARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVEERVEIVKR-RDEYDADPFAF 231 (340)
T ss_pred CCCCEEEEECCEEEECC---CCEEEECCCCCCCCCCCCHHHHHCCCEEEEECCCCHHHHHHHEEE-HHHHCCCCCHH
T ss_conf 47830586356023037---635871578887666674015244652787226772220122010-03317788534
No 223
>KOG2543 consensus
Probab=96.54 E-value=0.055 Score=35.62 Aligned_cols=179 Identities=13% Similarity=0.103 Sum_probs=101.5
Q ss_pred HHHHCCHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCC
Q ss_conf 656109299999999999828--898166311798988899999999998177998864312101267886799996789
Q gi|254780217|r 11 NQRLFGHEDIEKFLSQYYCSG--RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 (347)
Q Consensus 11 ~~~i~G~~~~~~~L~~~~~~~--~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (347)
-..+.+-+.++..|...+-.+ ++|-.+.++|-.|+||+.+.+.+-+.. +.....-.|-.|-.- ......|.+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~~~vw~n~~ecft~--~~lle~IL~~~ 80 (438)
T KOG2543 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NLENVWLNCVECFTY--AILLEKILNKS 80 (438)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC--CCCCEEEEHHHHCCH--HHHHHHHHHHH
T ss_conf 56765468999999998478986665157996147874559999998603--786305415775167--99999999873
Q ss_pred CCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCC-C-CCCH-HHHHHHHHHCCHHHHHH---HHHHHHHCC-CCC
Q ss_conf 875453001000101342123237887554431022211-1-1210-35322055424000145---677766303-434
Q gi|254780217|r 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN-T-GYWR-VIMIDPVDGMNRNAANA---LLKSLEEPP-QKV 161 (347)
Q Consensus 89 hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~-~-~~~K-i~IId~ad~ln~~AaNA---LLK~LEEPp-~~t 161 (347)
. . .+.. ..+..+.-+-+-..+..+...+. . .+.+ ++|+|+||.+..-.+|- |++.=|=-+ ..+
T Consensus 81 ~----~----~d~d--g~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i 150 (438)
T KOG2543 81 Q----L----ADKD--GDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI 150 (438)
T ss_pred C----C----CCCC--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 5----6----7874--0555427999999999998447764467449999747776630650788999989987377736
Q ss_pred CEEEEECCCCCCCH--HHHCEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 16765044335730--2520369886479998999999997278
Q gi|254780217|r 162 LFILISHASPTILS--TIRSRCLSIKFNSLSENNLYKALEQLKI 203 (347)
Q Consensus 162 ~fiLit~~~~~il~--TI~SRc~~i~f~~l~~~~~~~~L~~~~~ 203 (347)
.|+|+..-..+.-. |=.+--..+.|+..+.+++.+++....+
T Consensus 151 ~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543 151 VIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred EEEEECCCCHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCC
T ss_conf 99983266677752146777864785387788999999841783
No 224
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.53 E-value=0.012 Score=40.99 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=57.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC----CCHHHHHHHC-CCCC---CEEEECCCCH----HH
Q ss_conf 166311798988899999999998177998864312101267----8867999967-8987---5453001000----10
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP----CSPFVKQMAS-HALH---DFLYLSYSLN----PK 102 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~----~~~~~~~i~~-~~hp---d~~~i~~~~~----~k 102 (347)
...++.||.|.|||..+..++....-...... . .-..+ ....+..+.. +.+. ....+....- ++
T Consensus 25 ~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~--~--li~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKR--V--LVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRK 100 (201)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCE--E--EEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHH
T ss_conf 98899899996099999999999863389975--9--9990859999999988601021020445565247737999999
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH-CCCCCCEEEEECCC
Q ss_conf 13421232378875544310222-1111210353220554240001456777663-03434167650443
Q gi|254780217|r 103 TGKWRTVITVDEIRRIRYFLSLT-ANTGYWRVIMIDPVDGMNRNAANALLKSLEE-PPQKVLFILISHAS 170 (347)
Q Consensus 103 ~~~~~~~I~vd~IR~l~~~~~~~-~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE-Pp~~t~fiLit~~~ 170 (347)
.......|.|-.+..+...+... .....+.++||||||.+..+.....+..+-+ -+++..+++.|..+
T Consensus 101 ~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 170 (201)
T smart00487 101 LESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170 (201)
T ss_pred HHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 9759998999558999999972754525431999989677512570999999999679999789992489
No 225
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0041 Score=44.69 Aligned_cols=147 Identities=16% Similarity=0.193 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCC-CCCCEEEECCCCHHHC-------
Q ss_conf 89816631179898889999999999817799886431210126788679999678-9875453001000101-------
Q gi|254780217|r 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH-ALHDFLYLSYSLNPKT------- 103 (347)
Q Consensus 32 ~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~-~hpd~~~i~~~~~~k~------- 103 (347)
++++-+.++|+||+||+|++..+|..|-..+ ...+|...+ .+..| .--.+-.++....+++
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~--------EVR~gGkR~GF~Ivdl~tg~~~~la~~~~ 71 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITP--------EVREGGKRIGFKIVDLATGEEGILARVGF 71 (179)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEEEE--------EEECCCEEEEEEEEECCCCCEEEEEECCC
T ss_conf 7545999867998458999999999998559---665139831--------14208827515999814795579888478
Q ss_pred CCC---CCCCCHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC-EEEEEC--CCCCCCHH
Q ss_conf 342---12323788755-443102221111210353220554240001456777663034341-676504--43357302
Q gi|254780217|r 104 GKW---RTVITVDEIRR-IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVL-FILISH--ASPTILST 176 (347)
Q Consensus 104 ~~~---~~~I~vd~IR~-l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~-fiLit~--~~~~il~T 176 (347)
++. +=..-+|..-+ .+..+.. +... ..|+|||++-.| .-..+.+.+.+||--+... .|-+-| ..+-++.-
T Consensus 72 ~~~rvGkY~V~v~~le~i~~~al~r-A~~~-aDvIIIDEIGpM-Elks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ 148 (179)
T COG1618 72 SRPRVGKYGVNVEGLEEIAIPALRR-ALEE-ADVIIIDEIGPM-ELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQR 148 (179)
T ss_pred CCCCCCEEEEEHHHHHHHHHHHHHH-HHHC-CCEEEEECCCCH-HHCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
T ss_conf 8762104786278889986899998-8634-998999433633-020088999999996589937999962567758998
Q ss_pred HHCEEEEEE-CCCCCHH
Q ss_conf 520369886-4799989
Q gi|254780217|r 177 IRSRCLSIK-FNSLSEN 192 (347)
Q Consensus 177 I~SRc~~i~-f~~l~~~ 192 (347)
|+++--.+- +.|-+.+
T Consensus 149 ik~~~~v~v~lt~~NR~ 165 (179)
T COG1618 149 IKKLGGVYVFLTPENRN 165 (179)
T ss_pred HHHCCCEEEEECCCHHH
T ss_conf 64248779997512156
No 226
>PRK10536 hypothetical protein; Provisional
Probab=96.53 E-value=0.0089 Score=42.02 Aligned_cols=149 Identities=15% Similarity=0.196 Sum_probs=77.5
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 66555587565610929999999999982889816631179898889999999999817799886431210126788679
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV 81 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~ 81 (347)
|.+.-+++.-..|.......+.+.+++..+.+ .+-.||.|+|||-+|.+.|-..|-......-- ... |
T Consensus 45 ~~~~~~~~~~~pi~pkt~~Q~~yi~~i~~~~i---vf~~GpAGTGKT~lA~a~Al~~l~~~~~~kII---ltR----P-- 112 (262)
T PRK10536 45 IGMARDSRDTSPILARNEAQLHYLKAIESKQL---IFATGEAGCGKTWISAAKAAEALIHKDVDRII---VTR----P-- 112 (262)
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCE---EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE---EEC----C--
T ss_conf 43302678899867898649999999861983---99989998758999999999999858886899---966----7--
Q ss_pred HHHHCCCCCCEEEECCCCHHHCCC--------CCCCCCHHHHHHH-------HHHCCCCCCCC---CCHHHHHHHHHHCC
Q ss_conf 999678987545300100010134--------2123237887554-------43102221111---21035322055424
Q gi|254780217|r 82 KQMASHALHDFLYLSYSLNPKTGK--------WRTVITVDEIRRI-------RYFLSLTANTG---YWRVIMIDPVDGMN 143 (347)
Q Consensus 82 ~~i~~~~hpd~~~i~~~~~~k~~~--------~~~~I~vd~IR~l-------~~~~~~~~~~~---~~Ki~IId~ad~ln 143 (347)
.+..|. |+=++.-..++|-.. ....++.+.+..+ ++...+.-..| ...++|+|||.+||
T Consensus 113 -~V~~ge--~lGfLPGdl~EK~~Pyl~Pi~D~L~~~lg~~~~~~~~~~e~G~Iei~PlafmRGrTf~na~IIvDEaQN~T 189 (262)
T PRK10536 113 -VLQADE--DLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVT 189 (262)
T ss_pred -CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEHHHHCCCCCCCEEEEEEHHHCCC
T ss_conf -875676--66769898799887888789999999968599999987305948998758744775144289984121289
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 0001456777663034341676504
Q gi|254780217|r 144 RNAANALLKSLEEPPQKVLFILISH 168 (347)
Q Consensus 144 ~~AaNALLK~LEEPp~~t~fiLit~ 168 (347)
....-.+|-=+- .++.+|++-.
T Consensus 190 ~~qmk~iLTRiG---~~SKiVi~GD 211 (262)
T PRK10536 190 AAQMKMFLTRLG---ENVTVIVNGD 211 (262)
T ss_pred HHHHHHHHHHCC---CCCEEEEECC
T ss_conf 999988985425---9968999688
No 227
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=96.49 E-value=0.11 Score=33.30 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=88.2
Q ss_pred CCHHHHCCHHHHHHHHHHHHHCC------------CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 75656109299999999999828------------898166311798988899999999998177998864312101267
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCSG------------RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~~------------~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
..+.++=|-++..+.+...+.-- ..|.+.|++||||+||+.+|.++|...-...-.-++|.-.
T Consensus 203 vtyediG~l~e~~~~~re~~elP~~hPe~f~~lGiePPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPeim----- 277 (980)
T TIGR01243 203 VTYEDIGGLKEAVKKIREMVELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEIM----- 277 (980)
T ss_pred CCHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHH-----
T ss_conf 203320335899999999884357564789861889987358755898617899999875305517885060344-----
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----------H
Q ss_conf 88679999678987545300100010134212323788755443102221111210353220554240-----------0
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-----------N 145 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----------~ 145 (347)
.+.... +-+..|++-+.. .++.--|++||++|.+.. .
T Consensus 278 -----sky~Ge-----------------------~e~~lr~if~ea----eenaP~iifideidaiaPkr~e~~Geve~r 325 (980)
T TIGR01243 278 -----SKYYGE-----------------------SEERLREIFKEA----EENAPSIIFIDEIDAIAPKREEVTGEVEKR 325 (980)
T ss_pred -----HHHCCC-----------------------CHHHHHHHHHHH----HHCCCCEEEEECHHHCCCCCCCHHHHHHHH
T ss_conf -----331363-----------------------078999999865----305870787412110076410000168899
Q ss_pred HHHHHHHHHHHCCC--CCCEEEEECCCCCCCHHHHCEE---EEEECCCCCHHHHHHHHHHH
Q ss_conf 01456777663034--3416765044335730252036---98864799989999999972
Q gi|254780217|r 146 AANALLKSLEEPPQ--KVLFILISHASPTILSTIRSRC---LSIKFNSLSENNLYKALEQL 201 (347)
Q Consensus 146 AaNALLK~LEEPp~--~t~fiLit~~~~~il~TI~SRc---~~i~f~~l~~~~~~~~L~~~ 201 (347)
-..-||-.+.---. .++.|=.|+.|+.+-|.+|--. +.+.+..|+...-.++|+-.
T Consensus 326 ~v~qlltlmdGlk~rG~v~viGatnrP~a~dPalrrPGrfdrei~~~~Pd~~~r~eil~~h 386 (980)
T TIGR01243 326 VVAQLLTLMDGLKGRGKVIVIGATNRPDALDPALRRPGRFDREIEIGVPDKEGRKEILQIH 386 (980)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 9999999974002487289981468850026224278864433574188545678888764
No 228
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.48 E-value=0.0072 Score=42.73 Aligned_cols=138 Identities=22% Similarity=0.225 Sum_probs=71.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC-CCCHHHHHHHCC--------CCCCEEEECCCCHHHCC
Q ss_conf 816631179898889999999999817799886431210126-788679999678--------98754530010001013
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD-PCSPFVKQMASH--------ALHDFLYLSYSLNPKTG 104 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~-~~~~~~~~i~~~--------~hpd~~~i~~~~~~k~~ 104 (347)
+..+|+.|.+|+||+.++.+|+...+.+... |--.+.. ......+++++- .+-.+.+++...-
T Consensus 24 gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~----~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l~~i~~~~~---- 95 (230)
T PRK08533 24 GSIILIEGDESTGKSILSQRLAYGFLQNGYS----VSYVSSQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPL---- 95 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCE----EEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCEEEEECCCC----
T ss_conf 8489998689987899999999999878986----99999438999999999986998179975796799961343----
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC-----CHHHHHHHHHHHHHCCCCCCEEEEECCCCCC----CH
Q ss_conf 42123237887554431022211112103532205542-----4000145677766303434167650443357----30
Q gi|254780217|r 105 KWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM-----NRNAANALLKSLEEPPQKVLFILISHASPTI----LS 175 (347)
Q Consensus 105 ~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~l-----n~~AaNALLK~LEEPp~~t~fiLit~~~~~i----l~ 175 (347)
.....+-++....+-..+......|+|||....+ +.++...++..+..--+....|++|-+|..+ +.
T Consensus 96 ----~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l~s~gktIilTv~p~~~~e~~l~ 171 (230)
T PRK08533 96 ----LSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQIRDLMAFFKRISSLNKVIILTANPKELPESVLL 171 (230)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH
T ss_conf ----3540457899999973266437989999053188516777899999999999998589889999563313624544
Q ss_pred HHHCEEEE
Q ss_conf 25203698
Q gi|254780217|r 176 TIRSRCLS 183 (347)
Q Consensus 176 TI~SRc~~ 183 (347)
.+||=|-.
T Consensus 172 ~lrs~aDv 179 (230)
T PRK08533 172 ILRTASTI 179 (230)
T ss_pred HHHEEEEE
T ss_conf 20410489
No 229
>KOG0726 consensus
Probab=96.47 E-value=0.017 Score=39.84 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=83.6
Q ss_pred CCHHHHCCHHHHHHHHHHHHHC------------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 7565610929999999999982------------8898166311798988899999999998177998864312101267
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCS------------GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~------------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
-+++++=|-+..++.++.+..- -+.|.+.++||+||.||+.+|.+.|..--. .-.....++.
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA------TFlRvvGseL 255 (440)
T KOG0726 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA------TFLRVVGSEL 255 (440)
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCH------HHHHHHHHHH
T ss_conf 1113442578999999986338889878999728899970588679997536888877245521------2455650899
Q ss_pred -------CCHHHH---HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH
Q ss_conf -------886799---9967898754530010001013421232378875544310222111121035322055424000
Q gi|254780217|r 77 -------CSPFVK---QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 (347)
Q Consensus 77 -------~~~~~~---~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A 146 (347)
--+.+| +++....|.+++| |+|-.+...-+-+ ..|+. .+-
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFi-----------------DEIdAiGtKRyds-~Sgge------------rEi 305 (440)
T KOG0726 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFI-----------------DEIDAIGTKRYDS-NSGGE------------REI 305 (440)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCEEEE-----------------EHHHHHCCCCCCC-CCCHH------------HHH
T ss_conf 99873655199999998887529826986-----------------4001104521347-88507------------899
Q ss_pred HHHHHHHHH-----HCCCCCCEEEEECCCCCCCHHH-HCEE--EEEECCCCCHHHHHHHH
Q ss_conf 145677766-----3034341676504433573025-2036--98864799989999999
Q gi|254780217|r 147 ANALLKSLE-----EPPQKVLFILISHASPTILSTI-RSRC--LSIKFNSLSENNLYKAL 198 (347)
Q Consensus 147 aNALLK~LE-----EPp~~t~fiLit~~~~~il~TI-~SRc--~~i~f~~l~~~~~~~~L 198 (347)
|-.+|-.|- +-...+..|+.|+..+.+-|.+ |--+ +++-|.-++...-++++
T Consensus 306 QrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf 365 (440)
T KOG0726 306 QRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIF 365 (440)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHCEEE
T ss_conf 999999987426866567758997416534467755278754311125797556323156
No 230
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.44 E-value=0.0067 Score=43.00 Aligned_cols=51 Identities=18% Similarity=0.304 Sum_probs=33.8
Q ss_pred CHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 1035322055-4240001456777663034341676504433573025203698864
Q gi|254780217|r 131 WRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 131 ~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
-+|+|+||+= .+..++...+.+.|++-.++...|+|||+.+ ||+. |-++-+
T Consensus 498 ~~iliLDE~TSalD~~te~~i~~~l~~~~~~~Tvi~IaHrl~----~i~~-~D~I~v 549 (581)
T PRK11176 498 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS----TIEK-ADEILV 549 (581)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH----HHHH-CCEEEE
T ss_conf 998998586335899999999999999739999999718898----9984-998999
No 231
>PRK13768 GTPase; Provisional
Probab=96.39 E-value=0.023 Score=38.64 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=52.9
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCH
Q ss_conf 98166311798988899999999998177998864312101267886799996789875453001000101342123237
Q gi|254780217|r 33 MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 (347)
Q Consensus 33 l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~v 112 (347)
++.+.++.||+|+||+|+..++.+++-... .++..-.-|| .. ..+.++.+ --.+.-|++
T Consensus 1 M~~~~~ViGpaGSGKsT~~~~l~~~l~~~~----r~~~vvNLDP---A~-----------e~~pY~~~---iDIRd~i~~ 59 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLVGALSDWLEEQG----YDVAIVNLDP---AV-----------EYLPYKPD---IDVREYVSA 59 (253)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCC----CCEEEEECCC---CC-----------CCCCCCCC---CCHHHHCCH
T ss_conf 971899989999988999999999999769----9759997898---66-----------58999988---637861789
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 88755443102221111210353220554240001456777663034341676
Q gi|254780217|r 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFIL 165 (347)
Q Consensus 113 d~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiL 165 (347)
++| -+...+.|.-| +|..+|.+-.+ .+-+..-+|+-+.. ++|+
T Consensus 60 ~dV---M~~~~LGPNGa-----li~~~e~l~~~-~d~l~~~i~~~~~d-Y~i~ 102 (253)
T PRK13768 60 REI---MRKYGLGPNGA-----LIASVDLLLTK-AEEIKEEIERLDAD-YVLV 102 (253)
T ss_pred HHH---HHHHCCCCCHH-----HHHHHHHHHHH-HHHHHHHHHHCCCC-EEEE
T ss_conf 999---98819896468-----99999999998-99999998515887-5998
No 232
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=96.39 E-value=0.004 Score=44.82 Aligned_cols=139 Identities=20% Similarity=0.202 Sum_probs=78.7
Q ss_pred HHHHCCHHHHHHHHHHHHHCCC---CC---------EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 6561092999999999998288---98---------16631179898889999999999817799886431210126788
Q gi|254780217|r 11 NQRLFGHEDIEKFLSQYYCSGR---MH---------HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 (347)
Q Consensus 11 ~~~i~G~~~~~~~L~~~~~~~~---l~---------ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~ 78 (347)
...|+||++++..+.=.+-+|- ++ | +|+.|.||+||+.+-+.+++.. .-.-+.+|..++
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDIn-ILLvGDPgtaKSqlLk~v~~~a----Pr~vytsgkgss---- 355 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIH-ILLVGDPGTAKSQLLKYVAKLA----PRGVYTSGKGSS---- 355 (682)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE-EEECCCCCHHHHHHHHHHHHHC----CCEEEECCCCCC----
T ss_conf 1510381999999999960897664799862024226-9981798251999999988648----840797264125----
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHH--HHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 6799996789875453001000101342123237887--55443102221111210353220554240001456777663
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI--RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~I--R~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
..++--. ..-|.+ +...+--.+- .+..=|+-||+.|.|+....+|+.-.+|-
T Consensus 356 ----------~~GLTAa--------------v~rd~~tge~~LeaGALV--lAD~Gv~cIDEfdKm~~~dr~aihEaMEQ 409 (682)
T COG1241 356 ----------AAGLTAA--------------VVRDKVTGEWVLEAGALV--LADGGVCCIDEFDKMNEEDRVAIHEAMEQ 409 (682)
T ss_pred ----------CCCCEEE--------------EEECCCCCEEEEECCEEE--EECCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf ----------4573069--------------997067760788677799--92497799970567776789999999875
Q ss_pred CCCCCCEE---------------EEECCC--------------CCCCHHHHCEEEEEECC
Q ss_conf 03434167---------------650443--------------35730252036988647
Q gi|254780217|r 157 PPQKVLFI---------------LISHAS--------------PTILSTIRSRCLSIKFN 187 (347)
Q Consensus 157 Pp~~t~fi---------------Lit~~~--------------~~il~TI~SRc~~i~f~ 187 (347)
+|+=| |.+-|| -.+++|+.||--.+.+-
T Consensus 410 ---QtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl 466 (682)
T COG1241 410 ---QTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVL 466 (682)
T ss_pred ---CEEEECCCCEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHCCEEEEE
T ss_conf ---275120554254111444456651887776799999788558983577517754770
No 233
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.39 E-value=0.0037 Score=45.07 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=34.0
Q ss_pred CCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 21035322055-4240001456777663034341676504433
Q gi|254780217|r 130 YWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASP 171 (347)
Q Consensus 130 ~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~ 171 (347)
+-+|+|+||+- .+...+...+++.|.+.-++..+|++||+++
T Consensus 158 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~Tvi~itH~~~ 200 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPS 200 (220)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 9999999687568898999999999998769998999935988
No 234
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.0044 Score=44.48 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=40.1
Q ss_pred CCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 21035322055-4240001456777663034341676504433573025203698864
Q gi|254780217|r 130 YWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 130 ~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
.-+|+|+||+- .|...+...++..|.+-.++...|+|||+.+ +++. |.++-+
T Consensus 155 ~~~ililDEpts~LD~~te~~i~~~l~~~~~~~Tvi~itHr~~----~~~~-~D~Iiv 207 (236)
T cd03253 155 NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLS----TIVN-ADKIIV 207 (236)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHH----HHHH-CCEEEE
T ss_conf 9999999687567998999999999999809998999826878----8985-999999
No 235
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.34 E-value=0.018 Score=39.49 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=26.5
Q ss_pred HHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999828-89816631179898889999999999817
Q gi|254780217|r 24 LSQYYCSG-RMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 24 L~~~~~~~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
|...+..| --++.+|+.|++|+||+++|..|+..-+.
T Consensus 21 lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~ 58 (241)
T PRK06067 21 IDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALN 58 (241)
T ss_pred HHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 78650699779908999807998879999999999986
No 236
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=96.30 E-value=0.016 Score=39.91 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=41.8
Q ss_pred HHHHCCHHHHHHHHHHHHHC------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 65610929999999999982------8898166311798988899999999998177
Q gi|254780217|r 11 NQRLFGHEDIEKFLSQYYCS------GRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 11 ~~~i~G~~~~~~~L~~~~~~------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
-..++||+-+.+.+.++++. .+=|=.+-|+|++|+||.-.|+.+|+.|.-.
T Consensus 24 ~~~lfGQhla~~~v~~al~~~l~~~~p~KpLVlSfHG~tGtGKn~vs~liA~~Ly~~ 80 (127)
T pfam06309 24 ARRLFGQHLVKQLVVRSVKGHWENPKPRKPLVLSFHGWTGTGKNFVAEIIADNLYRD 80 (127)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 875347798999999999999748999997488701899987989999999998754
No 237
>KOG1803 consensus
Probab=96.28 E-value=0.0078 Score=42.47 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=38.9
Q ss_pred CHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 1035322055-424000145677766303434167650443357302520369886479998999999997
Q gi|254780217|r 131 WRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQ 200 (347)
Q Consensus 131 ~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~ 200 (347)
+-++|||+|- .|-.+..=++||.= .||| +-+|..++|||.|+=-. -..+...-+..+.+.
T Consensus 359 fD~vIIDEaaQamE~~cWipvlk~k-------k~IL-aGDp~QLpP~v~S~~a~--~~gl~~Sl~erlae~ 419 (649)
T KOG1803 359 FDLVIIDEAAQAMEPQCWIPVLKGK-------KFIL-AGDPKQLPPTVLSDKAK--RGGLQVSLLERLAEK 419 (649)
T ss_pred CCEEEEEHHHHHCCCHHHHHHHCCC-------CEEE-ECCCCCCCCCCCCCHHH--HCCCHHHHHHHHHHH
T ss_conf 8889981254323501306776277-------3699-28800178600242334--245123499999987
No 238
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.28 E-value=0.01 Score=41.45 Aligned_cols=40 Identities=13% Similarity=0.348 Sum_probs=20.8
Q ss_pred CHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 1035322055-424000145677766303434167650443
Q gi|254780217|r 131 WRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHAS 170 (347)
Q Consensus 131 ~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~ 170 (347)
-+|+|+|||= .+..++...+.+.|++-.++...|.|||..
T Consensus 495 p~iliLDEaTSaLD~~tE~~i~~~l~~~~~~~T~i~IaHRl 535 (593)
T PRK10790 495 PQILILDEATASIDSGTEQAIQQALAAIREHTTLVVIAHRL 535 (593)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 89999838777889999999999999972899899970789
No 239
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=96.25 E-value=0.02 Score=39.26 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=74.3
Q ss_pred CCHHHHCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH--CCCCCCCHHHHHHH
Q ss_conf 7565610929999999999982-88981663117989888999999999981779988643121--01267886799996
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM--CNPDPCSPFVKQMA 85 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~--~~~~~~~~~~~~i~ 85 (347)
..+.+++|+-.+.+.+.+.+.+ ..-.-..|++|+.|+||...|+++=++ ..-.+.|.-. |..-+. ..++
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~----S~R~~~PFVavNcaAip~----~l~E 209 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQA----SPRAKGPFIAVNCAAIPE----NLLE 209 (464)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH----CCCCCCCCEEEECCCCCH----HHHH
T ss_conf 55677520699999999999998477997899778987589999999860----744589925633464898----8877
Q ss_pred CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC--------
Q ss_conf 789875453001000101342123237887554431022211112103532205542400014567776630--------
Q gi|254780217|r 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP-------- 157 (347)
Q Consensus 86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP-------- 157 (347)
+ - .+.++..--+|...+. ..++.. ..|+ ..++|++..|..+.|..||+.|+|=
T Consensus 210 S----E--LFGhekGAFTGA~~~r---------~G~fE~--A~GG--TLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 210 S----E--LFGHEKGAFTGAITRR---------IGRFEQ--ANGG--TLFLDEIGEMPLELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred H----H--HHCCCCCCCCCCCCCC---------CCCEEE--CCCC--EEEEECCCCCCHHHHHHHHHHHHCCEEEECCCC
T ss_conf 7----7--6145656767764345---------761577--3796--587323110999999999999870706735888
Q ss_pred ---CCCCCEEEEECC
Q ss_conf ---343416765044
Q gi|254780217|r 158 ---PQKVLFILISHA 169 (347)
Q Consensus 158 ---p~~t~fiLit~~ 169 (347)
+-++.+|-.|+.
T Consensus 271 ~~i~vdvRiIaaT~~ 285 (464)
T COG2204 271 KPIKVDVRIIAATNR 285 (464)
T ss_pred CEECEEEEEEEECCC
T ss_conf 600001699960577
No 240
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.24 E-value=0.006 Score=43.37 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=36.1
Q ss_pred CCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEE
Q ss_conf 21035322055-424000145677766303434167650443357302520369886
Q gi|254780217|r 130 YWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 (347)
Q Consensus 130 ~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~ 185 (347)
.-+|+|+||+- .|...+...++..|.+-.++...|+|||+.+ ++. +|-++-
T Consensus 168 ~p~ililDEptSaLD~~te~~i~~~l~~~~~~~Tvi~ItH~l~----~~~-~~DrIi 219 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLS----TVE-RADQIL 219 (226)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH----HHH-HCCEEE
T ss_conf 9999999797668899999999999998669999999937999----998-499999
No 241
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.24 E-value=0.015 Score=40.22 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=25.4
Q ss_pred HHHHHHCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999998288-9816631179898889999999999817
Q gi|254780217|r 24 LSQYYCSGR-MHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 24 L~~~~~~~~-l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
|.+.+..|= -....+++||||+||+++|+.+|.....
T Consensus 12 lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~ 49 (224)
T PRK09361 12 LDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEAAR 49 (224)
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99862699888879999899998599999999999997
No 242
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0068 Score=42.97 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=36.5
Q ss_pred CCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 21035322055-4240001456777663034341676504433573025203698864
Q gi|254780217|r 130 YWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 130 ~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
+.+|+|+||+- .+...+...++..|.+-.++...|+|||+.+. + .+|-++-+
T Consensus 156 ~~~iliLDEpts~LD~~~e~~i~~~l~~~~~~~TvI~itH~l~~----l-~~~D~Iiv 208 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLST----I-ENADRIVV 208 (234)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHH----H-HHCCEEEE
T ss_conf 99989996876689989999999999998199989999278889----9-85999999
No 243
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.17 E-value=0.012 Score=41.03 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=77.1
Q ss_pred CCHHHHCCHHHHHHHHHHHHHCCC-----CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHH
Q ss_conf 756561092999999999998288-----981663117989888999999999981779988643121012678867999
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCSGR-----MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~~~-----l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~ 83 (347)
..|++++|-++.+..+.+.+++.- --..++++||.|.||+++|..+-+.+=.. .-+....|.
T Consensus 55 ~~F~dffGme~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~y---~~Y~i~gsP---------- 121 (358)
T pfam08298 55 PAFADFFGMEETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLELV---PIYALKGSP---------- 121 (358)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC---CEEEECCCC----------
T ss_conf 5423200159999999999999972367210589997789877589999999872058---648844897----------
Q ss_pred HHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHH-HHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 967898754530010001013421232378875544-3102221111210353220554240001456777663034341
Q gi|254780217|r 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIR-YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVL 162 (347)
Q Consensus 84 i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~-~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~ 162 (347)
-..||=. .+ ..++.|... +.+...+ ++ |+ ..|..-+ .+-|||-..+.-
T Consensus 122 --m~e~PL~-L~---------------~p~~~r~~le~~~gi~~----~~---i~--g~l~P~~----~~rL~e~~Gd~~ 170 (358)
T pfam08298 122 --VFESPLH-LF---------------NPHHLRDILEDEYGIPR----RR---LE--GDLSPWC----TKRLEEFGGDIE 170 (358)
T ss_pred --CCCCCCC-CC---------------CHHHHHHHHHHHHCCCH----HH---CC--CCCCHHH----HHHHHHHCCCHH
T ss_conf --7789854-77---------------86775999998749952----12---08--9889899----999999389855
Q ss_pred EEEEECCCCCCCHHHHCEEEEEECCCC--CHHHHHHHHH
Q ss_conf 676504433573025203698864799--9899999999
Q gi|254780217|r 163 FILISHASPTILSTIRSRCLSIKFNSL--SENNLYKALE 199 (347)
Q Consensus 163 fiLit~~~~~il~TI~SRc~~i~f~~l--~~~~~~~~L~ 199 (347)
- =...++.+..+.|.-.-.|.|- ..+++.....
T Consensus 171 ~----~~V~r~~~S~~~r~gi~t~~P~D~~nqD~s~L~G 205 (358)
T pfam08298 171 K----FKVVKIFPSILRQIGIAKTEPGDENNQDISALVG 205 (358)
T ss_pred H----EEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf 2----7899955560045689996899987633778743
No 244
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=96.13 E-value=0.067 Score=34.95 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHCCC--CCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999998288--981663117989888999999999981
Q gi|254780217|r 19 DIEKFLSQYYCSGR--MHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 19 ~~~~~L~~~~~~~~--l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
...+.|.+.+..-. -|-.+=++|+=|+||+++...+...+-
T Consensus 3 ~~a~~la~~i~~~~~~~~~vIgl~G~WGsGKTs~l~~~~~~L~ 45 (301)
T pfam07693 3 KYAENLAKLLVEPSLAPGFVIGLYGAWGSGKTSFLNLLEDELK 45 (301)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7899999999577789997999989899999999999999986
No 245
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.06 E-value=0.0093 Score=41.84 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=4.8
Q ss_pred CCCCCCCHHHHH
Q ss_conf 179898889999
Q gi|254780217|r 40 EGEQGIGKATLG 51 (347)
Q Consensus 40 ~Gp~GiGK~~~A 51 (347)
.+..|.--..+.
T Consensus 27 ~~~~G~sl~~l~ 38 (694)
T TIGR03375 27 LEDGRLTPELLP 38 (694)
T ss_pred CCCCCCCHHHHH
T ss_conf 999999999999
No 246
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.0098 Score=41.67 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=35.8
Q ss_pred CCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 21035322055-4240001456777663034341676504433573025203698864
Q gi|254780217|r 130 YWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 130 ~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
+-+|+|+||+- .|...+...++..|.+-.++...|++||+.+. .+.|-++-+
T Consensus 157 ~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~TvI~itH~~~~-----~~~~D~iiv 209 (229)
T cd03254 157 DPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLST-----IKNADKILV 209 (229)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHH-----HHHCCEEEE
T ss_conf 89989998977789989999999999998099889999269889-----985999999
No 247
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.00 E-value=0.018 Score=39.53 Aligned_cols=28 Identities=36% Similarity=0.506 Sum_probs=24.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8166311798988899999999998177
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
...++|+|++|+|||-+|.++|+.++-.
T Consensus 183 ~~nLlf~G~~G~GKTfLa~~IA~ell~~ 210 (330)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR 210 (330)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 8866988999998899999999999987
No 248
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.98 E-value=0.085 Score=34.11 Aligned_cols=211 Identities=16% Similarity=0.137 Sum_probs=113.0
Q ss_pred HHCCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCC---C-CCCHHHHHH--
Q ss_conf 61092999999999998288--981663117989888999999999981779988643121012---6-788679999--
Q gi|254780217|r 13 RLFGHEDIEKFLSQYYCSGR--MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP---D-PCSPFVKQM-- 84 (347)
Q Consensus 13 ~i~G~~~~~~~L~~~~~~~~--l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~---~-~~~~~~~~i-- 84 (347)
+++|-+...+.|..++...+ -.-..++.|..||||+.+...+.+-+-.. ....-++.|.. + +.++....+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~--~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ--RGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 978707689999999999837771699987558774899999999987424--006417104765689855899999999
Q ss_pred -HC--CCCCCEEEECCCCHHHC---CCCCCCCCHHH-----------------------HH---HHHHHCCCCCCCCCCH
Q ss_conf -67--89875453001000101---34212323788-----------------------75---5443102221111210
Q gi|254780217|r 85 -AS--HALHDFLYLSYSLNPKT---GKWRTVITVDE-----------------------IR---RIRYFLSLTANTGYWR 132 (347)
Q Consensus 85 -~~--~~hpd~~~i~~~~~~k~---~~~~~~I~vd~-----------------------IR---~l~~~~~~~~~~~~~K 132 (347)
.. .+..|... ..|..+- -.....+.+|- .| .+..++..-....+-=
T Consensus 79 l~~~ll~~~~~~~--~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 79 LMGQLLSESDTRI--LSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHCCCCHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 9987752566057--99999999862644303786269897304888511005822467899999999999997355984
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCC-----CCCCEEEEECCCCCCCHHHHCEE--EEEECCCCCHHHHHHHHHHHCC--
Q ss_conf 35322055424000145677766303-----43416765044335730252036--9886479998999999997278--
Q gi|254780217|r 133 VIMIDPVDGMNRNAANALLKSLEEPP-----QKVLFILISHASPTILSTIRSRC--LSIKFNSLSENNLYKALEQLKI-- 203 (347)
Q Consensus 133 i~IId~ad~ln~~AaNALLK~LEEPp-----~~t~fiLit~~~~~il~TI~SRc--~~i~f~~l~~~~~~~~L~~~~~-- 203 (347)
|+++|+.+-.-..|-+-|=..+..-+ .|-+ ..+.+....+.+..+|+- ..+.+.|++..+....+.....
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v-~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEV-LLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCHHHHHCCCC-CCCCCCCCCHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 99971455357668999999999631003323641-03677763026776347864357516677366999999982776
Q ss_pred -CCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf -8896789999997598978999881
Q gi|254780217|r 204 -MGWDSKRDFVKIAAYGSVARAIKIL 228 (347)
Q Consensus 204 -~~~~~~~~~~~~~s~Gs~~~A~~ll 228 (347)
.........+...+.|+|.-+.+++
T Consensus 236 ~~~~~p~~~~i~~kt~GnPfFi~e~l 261 (849)
T COG3899 236 KLLPAPLLELIFEKTKGNPFFIEEFL 261 (849)
T ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHH
T ss_conf 54565579999998358976599999
No 249
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.012 Score=40.98 Aligned_cols=70 Identities=14% Similarity=0.380 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHCCHHH------------HHHHHHHHHHCCCC--------CCEEEE------ECCCCCCCHHHHCEE-EE
Q ss_conf 1035322055424000------------14567776630343--------416765------044335730252036-98
Q gi|254780217|r 131 WRVIMIDPVDGMNRNA------------ANALLKSLEEPPQK--------VLFILI------SHASPTILSTIRSRC-LS 183 (347)
Q Consensus 131 ~Ki~IId~ad~ln~~A------------aNALLK~LEEPp~~--------t~fiLi------t~~~~~il~TI~SRc-~~ 183 (347)
.-|++||++|..-..+ |--||-++|--.-+ -.+++| ...|+.++|-+.-|. .+
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIR 330 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIR 330 (444)
T ss_pred CCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCEECCCHHHCCHHHCCCCCEE
T ss_conf 69089734667874378899886643201021031057544315444014437887148200378132176662777348
Q ss_pred EECCCCCHHHHHHHHHH
Q ss_conf 86479998999999997
Q gi|254780217|r 184 IKFNSLSENNLYKALEQ 200 (347)
Q Consensus 184 i~f~~l~~~~~~~~L~~ 200 (347)
+-+.+|+.+++..+|.+
T Consensus 331 VEL~~Lt~~Df~rILte 347 (444)
T COG1220 331 VELDALTKEDFERILTE 347 (444)
T ss_pred EECCCCCHHHHHHHHCC
T ss_conf 87044899899999637
No 250
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=95.95 E-value=0.0052 Score=43.91 Aligned_cols=111 Identities=17% Similarity=0.229 Sum_probs=55.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHH
Q ss_conf 16631179898889999999999817799886431210126788679999678987545300100010134212323788
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~ 114 (347)
+-++++|-||+||+-+|..+...+. ....... .....++||=+..+......+.+... ...
T Consensus 2 ~v~~V~G~pGtGKTvv~l~l~~~l~-~~~~~~~--------------~~~l~~N~~~~~~l~~~l~~~~~~~~----~~~ 62 (348)
T pfam09848 2 AVFLVTGGPGTGKTVVALNLFAELS-DSDLGRT--------------AVFLSGNHPLVLVLYEALAGDLKVRK----KKL 62 (348)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HCCCCCC--------------EEEEECCHHHHHHHHHHHHHHCCHHH----CCC
T ss_conf 7999977799389999999999986-4402682--------------08995786699999999860412001----020
Q ss_pred HHHHHHHCCC-CCCCCCCHHHHHHHHHHCCHH--------HHHHHHHHHHHCCCCCCEEEE
Q ss_conf 7554431022-211112103532205542400--------014567776630343416765
Q gi|254780217|r 115 IRRIRYFLSL-TANTGYWRVIMIDPVDGMNRN--------AANALLKSLEEPPQKVLFILI 166 (347)
Q Consensus 115 IR~l~~~~~~-~~~~~~~Ki~IId~ad~ln~~--------AaNALLK~LEEPp~~t~fiLi 166 (347)
.+....|.+. ........|+|+||||+|... ..|-|..++.- ..+.++|+
T Consensus 63 ~~~~~~fi~~~~~~~~~~dvvivDEAhRl~~k~~~~~~~~~~~ql~~i~~~--a~v~V~~~ 121 (348)
T pfam09848 63 FRKPTSFINNLHKAPPHEDVVIVDEAHRLWTKSDLYFNFSGPNQLDEIMKR--AKVVVFFI 121 (348)
T ss_pred CCCCHHHHCCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHH--CCEEEEEE
T ss_conf 007252316523579867789983178665433655677857999999975--28599998
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.94 E-value=0.015 Score=40.16 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 631179898889999999999817
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
.|++||+|+||++++..+|.....
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 899989999899999999999876
No 252
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.93 E-value=0.012 Score=41.06 Aligned_cols=52 Identities=15% Similarity=0.314 Sum_probs=39.0
Q ss_pred CCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 21035322055-4240001456777663034341676504433573025203698864
Q gi|254780217|r 130 YWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 130 ~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
.-+|+|+||+= .|...+...+++.|++.-++..+|+|||+.+ +++ .|.++-+
T Consensus 156 ~~~illlDEpts~LD~~te~~i~~~l~~~~~~~Tvi~itHrl~----~l~-~aD~Iiv 208 (237)
T cd03252 156 NPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS----TVK-NADRIIV 208 (237)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHH----HHH-HCCEEEE
T ss_conf 9999999486456898999999999999829999999807888----998-4999999
No 253
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.93 E-value=0.046 Score=36.29 Aligned_cols=140 Identities=19% Similarity=0.168 Sum_probs=69.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC----HHHHHHHC--CCCCC-E
Q ss_conf 99999999982889816631179898889999999999817799886431210126788----67999967--89875-4
Q gi|254780217|r 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS----PFVKQMAS--HALHD-F 92 (347)
Q Consensus 20 ~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~----~~~~~i~~--~~hpd-~ 92 (347)
....|..++..+ +..++.||.|+||+|- +-++++...-...+ .-.|.- +.. .+..+++. |..+. .
T Consensus 54 ~~~~i~~ai~~~---~vvii~getGsGKTTq---lP~~lle~g~~~~g-~I~~tQ-PRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 54 VRDEILKAIEQN---QVVIIVGETGSGKTTQ---LPQFLLEEGLGIAG-KIGCTQ-PRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHHC---CEEEEECCCCCCHHHH---HHHHHHHHHCCCCC-EEEECC-CHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 899999999869---7899867998875878---89999960016687-599658-438999999999999838986765
Q ss_pred EEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH--HHHHHHH-HHHCCCCCCEEEEEC
Q ss_conf 530010001013421232378875544310222111121035322055424000--1456777-663034341676504
Q gi|254780217|r 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA--ANALLKS-LEEPPQKVLFILISH 168 (347)
Q Consensus 93 ~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A--aNALLK~-LEEPp~~t~fiLit~ 168 (347)
.=+...++++. ..++.|++-.=--+...+..-|..+++.++||||+|.=+.++ .=+|||- +..-++.-.+|+.|-
T Consensus 126 VGY~iRfe~~~-s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSA 203 (845)
T COG1643 126 VGYSIRFESKV-SPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSA 203 (845)
T ss_pred EEEEEEEECCC-CCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 43799962267-8771468951479999984380204587799701335568889999999999864688705999725
No 254
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.85 E-value=0.013 Score=40.57 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=68.3
Q ss_pred HHHHHHHCCCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC----------------------CCCH
Q ss_conf 999999828898-16631179898889999999999817799886431210126----------------------7886
Q gi|254780217|r 23 FLSQYYCSGRMH-HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD----------------------PCSP 79 (347)
Q Consensus 23 ~L~~~~~~~~l~-ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~----------------------~~~~ 79 (347)
.|.+.+-.|=+| -..|+.|.|||||.|+.+.+|..+-.....--+.+|+=+.. ....
T Consensus 70 ElDRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~ 149 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLED 149 (372)
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHH
T ss_conf 66540057730671799825998868899999999998639938998245678999989998587887727884356999
Q ss_pred HHHHHHCCCCCCEEEECCCC---HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 79999678987545300100---010134212323788755443102221111210353220554240001456777663
Q gi|254780217|r 80 FVKQMASHALHDFLYLSYSL---NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 80 ~~~~i~~~~hpd~~~i~~~~---~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
....+ ....|++++|+-.- .+. -....=+|-|||+.-..+..-+=..+.-+++| -..|++.+=|=-|+||-
T Consensus 150 Il~~i-~~~kP~~lIIDSIQT~~~~~--~~s~pGsvsQVReca~~L~~~AK~~~i~~~lV---GHVTK~G~iAGPkvLEH 223 (372)
T cd01121 150 ILASI-EELKPDLVIIDSIQTVYSSE--LTSAPGSVSQVRECTAELMRFAKERNIPIFIV---GHVTKEGSIAGPKVLEH 223 (372)
T ss_pred HHHHH-HHHCCCEEEEECHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE---EEECCCCCCCCCHHHEE
T ss_conf 99999-97199889995622020377--67799878999999999999998619739999---87626886377403100
Q ss_pred CCCCCCEEEE--ECCCCCCCHHHHCE
Q ss_conf 0343416765--04433573025203
Q gi|254780217|r 157 PPQKVLFILI--SHASPTILSTIRSR 180 (347)
Q Consensus 157 Pp~~t~fiLi--t~~~~~il~TI~SR 180 (347)
-- .|++-|= .++..++|-+++-|
T Consensus 224 mV-DtVl~fEgd~~~~~R~LR~~KNR 248 (372)
T cd01121 224 MV-DTVLYFEGDRHSEYRILRSVKNR 248 (372)
T ss_pred EE-EEEEEECCCCCCCEEEEEEECCC
T ss_conf 21-36887515776550356741156
No 255
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.84 E-value=0.019 Score=39.34 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=8.1
Q ss_pred EEECCCCCCCHHHHHHHHHH
Q ss_conf 63117989888999999999
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAG 56 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~ 56 (347)
+-+.||.|+||+|++..+.+
T Consensus 364 vaiVG~SGsGKSTL~~LL~g 383 (585)
T PRK13657 364 VAIVGPTGAGKSTLINLLHR 383 (585)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99988989869999999860
No 256
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.80 E-value=0.015 Score=40.19 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=40.1
Q ss_pred CCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 21035322055-4240001456777663034341676504433573025203698864
Q gi|254780217|r 130 YWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 130 ~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
+-+|+|+|++- .|...+...+.++|++--+++.+|++||+.+ ++.. |.++-+
T Consensus 156 ~p~IllLDEpTs~LD~~te~~i~~~l~~~~~~~TvI~itHrl~----~~~~-~DrIlv 208 (275)
T cd03289 156 KAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIE----AMLE-CQRFLV 208 (275)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH----HHHH-CCEEEE
T ss_conf 9998999797668999999999999999729998999943888----8986-999999
No 257
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=95.79 E-value=0.053 Score=35.75 Aligned_cols=131 Identities=13% Similarity=0.209 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEE
Q ss_conf 92999999999998288981663117989888999999999981779988643121012678867999967898754530
Q gi|254780217|r 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYL 95 (347)
Q Consensus 16 G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i 95 (347)
.|+...+ ++..+.+ .+..||.|+||+-+|.+.|-.++-......-- ...+ . +..|. ++=++
T Consensus 8 ~Q~~~~~----~l~~~~i---v~~~GpAGtGKT~la~~~al~~l~~~~~~kii--i~Rp-----~---v~~g~--~iGfL 68 (205)
T pfam02562 8 GQKRYVE----AIRKNDI---VFGIGPAGTGKTYLAVAAAVDALKDGKVKRII--LTRP-----A---VEAGE--KLGFL 68 (205)
T ss_pred HHHHHHH----HHHCCCE---EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE--EEEC-----C---CCCCC--CCCCC
T ss_conf 8999999----9717980---79989998609999999999999718943799--9757-----7---12577--54558
Q ss_pred CCCCHHHCC--------CCCCCCCHHHHHHHH-----HHCCCCCCCC---CCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 010001013--------421232378875544-----3102221111---210353220554240001456777663034
Q gi|254780217|r 96 SYSLNPKTG--------KWRTVITVDEIRRIR-----YFLSLTANTG---YWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 (347)
Q Consensus 96 ~~~~~~k~~--------~~~~~I~vd~IR~l~-----~~~~~~~~~~---~~Ki~IId~ad~ln~~AaNALLK~LEEPp~ 159 (347)
.-..++|-. .....++.++++.+. ++....-..| ...++|+|||.+||.+..-.+|==+- +
T Consensus 69 PG~~~eK~~p~~~p~~d~l~~~~~~~~~~~l~~~~~Ie~~pl~~iRGrTf~n~~iIvDEaQN~t~~~lk~ilTRiG---~ 145 (205)
T pfam02562 69 PGDLEEKVDPYLRPLYDALYDMLGAEKVEKLIERGVIEIAPLAYMRGRTLNDAFIILDEAQNTTPEQMKMFLTRIG---F 145 (205)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEECCHHHHCCCCCCCCEEEEECHHCCCHHHHHHHHHHCC---C
T ss_conf 8978999999999999999987289999999975975661467655476256889997221399999999984217---9
Q ss_pred CCCEEEEEC
Q ss_conf 341676504
Q gi|254780217|r 160 KVLFILISH 168 (347)
Q Consensus 160 ~t~fiLit~ 168 (347)
++.+|++-.
T Consensus 146 ~SK~vi~GD 154 (205)
T pfam02562 146 NSKMVVTGD 154 (205)
T ss_pred CCEEEEECC
T ss_conf 968999478
No 258
>PRK06921 hypothetical protein; Provisional
Probab=95.76 E-value=0.026 Score=38.32 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 89816631179898889999999999817
Q gi|254780217|r 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 32 ~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
.-.+.++|+|++|+|||-+|.++|+.|+-
T Consensus 114 ~~~~~l~f~G~~G~GKThLa~aIa~~Ll~ 142 (265)
T PRK06921 114 CRKNSIALLGQPGSGKTHLLTAAANELMR 142 (265)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 77662799728989889999999999999
No 259
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.036 Score=37.12 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=27.1
Q ss_pred HHHHHHHCCCCC-EEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999999828898-16631179898889999999999817
Q gi|254780217|r 23 FLSQYYCSGRMH-HALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 23 ~L~~~~~~~~l~-ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
.|.+.+-.|=+| .++|+-|.|||||+|+-+..|..+-.
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~ 119 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK 119 (456)
T ss_pred HHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 887653677236617997368987798999999999870
No 260
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.74 E-value=0.049 Score=36.06 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=23.5
Q ss_pred HHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99999828-898166311798988899999999998
Q gi|254780217|r 24 LSQYYCSG-RMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 24 L~~~~~~~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
|.+.+..| ....-+.++||||+||+++++.+|-..
T Consensus 8 lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~ 43 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred HHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996507996478799999999984999999999998
No 261
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.73 E-value=0.0094 Score=41.83 Aligned_cols=131 Identities=17% Similarity=0.140 Sum_probs=60.8
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHH
Q ss_conf 63117989888999999999981779988643121012678867999967898754530010001013421232378875
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR 116 (347)
++|+|+||+||+|+|..+|+.|=...... +..+ -|+... .-||+-- .|..+.-|
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~v------------------i~l~--kdy~~~-i~~DEsl-----pi~ke~yr 57 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRV------------------IHLE--KDYLRG-ILWDESL-----PILKEVYR 57 (261)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHC------------------CCCC--HHHHHH-EECCCCC-----CHHHHHHH
T ss_conf 99826999880178999999999720011------------------2132--014541-2331324-----03799999
Q ss_pred HHHHHCCCCCCCCC--CHHHHHHHHHHCCHHHHHHHHHHH--HHCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHH
Q ss_conf 54431022211112--103532205542400014567776--63034341676504433573025203698864799989
Q gi|254780217|r 117 RIRYFLSLTANTGY--WRVIMIDPVDGMNRNAANALLKSL--EEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSEN 192 (347)
Q Consensus 117 ~l~~~~~~~~~~~~--~Ki~IId~ad~ln~~AaNALLK~L--EEPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~ 192 (347)
+....-.++-..+. .++||+|+-.+.+ ++..-| |--.-+|.+..|--. .=+.|++-|- .=+=.|.+++
T Consensus 58 es~~ks~~rlldSalkn~~VIvDdtNYyk-----smRrqL~ceak~~~tt~ciIyl~--~plDtc~rrN-~ergepip~E 129 (261)
T COG4088 58 ESFLKSVERLLDSALKNYLVIVDDTNYYK-----SMRRQLACEAKERKTTWCIIYLR--TPLDTCLRRN-RERGEPIPEE 129 (261)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCHHH-----HHHHHHHHHHHHCCCCEEEEEEC--CCHHHHHHHH-CCCCCCCCHH
T ss_conf 99988899999998636499970632888-----99999999998637865999972--6889998860-2479999899
Q ss_pred HHHHHHHHH
Q ss_conf 999999972
Q gi|254780217|r 193 NLYKALEQL 201 (347)
Q Consensus 193 ~~~~~L~~~ 201 (347)
.+.+.....
T Consensus 130 vl~qly~Rf 138 (261)
T COG4088 130 VLRQLYDRF 138 (261)
T ss_pred HHHHHHHHH
T ss_conf 999999961
No 262
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.73 E-value=0.02 Score=39.13 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 1663117989888999999999981
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
...+++|+||+||+++++.+|....
T Consensus 20 ~it~i~G~pG~GKStl~lq~a~~~~ 44 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999989999849999999999986
No 263
>PRK10416 cell division protein FtsY; Provisional
Probab=95.73 E-value=0.021 Score=39.03 Aligned_cols=126 Identities=18% Similarity=0.236 Sum_probs=64.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH-HHHHHC-CCCCCEEEECCCCHHHCCCCCC
Q ss_conf 88981663117989888999999999981779988643121012678867-999967-8987545300100010134212
Q gi|254780217|r 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF-VKQMAS-HALHDFLYLSYSLNPKTGKWRT 108 (347)
Q Consensus 31 ~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~-~~~i~~-~~hpd~~~i~~~~~~k~~~~~~ 108 (347)
++-|+-+|+.|-.|+||||++-.+|.++......-- . ...|..+.. .-++.- +..-++-++... .+.+..
T Consensus 292 ~~~P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVl--l--aA~DTfRaAAieQL~~w~~r~~v~vi~~~----~g~Dpa 363 (499)
T PRK10416 292 GKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM--L--AAGDTFRAAAVEQLQVWGQRNNIPVIAQH----TGADSA 363 (499)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE--E--EEECCCCHHHHHHHHHHHCCCCCEEEECC----CCCCHH
T ss_conf 999879999747878789899999999997799537--8--84066756899999998424573698368----999979
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHH---------HHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 323788755443102221111210353220554240001---------4567776630343416765044335
Q gi|254780217|r 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA---------NALLKSLEEPPQKVLFILISHASPT 172 (347)
Q Consensus 109 ~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~Aa---------NALLK~LEEPp~~t~fiLit~~~~~ 172 (347)
.|--|-+ . .....++-|+|||-|-+|..... +.+-|..++.|..++++|=++--+.
T Consensus 364 ~V~~dai----~----~a~~~~~DvviiDTAGRl~~~~~LM~EL~ki~rvi~k~~~~aP~e~lLVlDa~tGQn 428 (499)
T PRK10416 364 SVIFDAI----Q----AAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN 428 (499)
T ss_pred HHHHHHH----H----HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHH
T ss_conf 9999999----9----999729998998577643260999999999999997237899974899977876778
No 264
>PRK13764 ATPase; Provisional
Probab=95.72 E-value=0.019 Score=39.28 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=32.7
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5656109299999999999828898166311798988899999999998177
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
++++.--.+..++.|.. -+.++|+.|+||.||+|||.++|.++...
T Consensus 241 sledY~l~~~l~~Rl~~------~a~GilIaG~PGaGKsTfaqalA~~~~~~ 286 (605)
T PRK13764 241 SLEDYNLSEKLKERLEE------RAEGILIAGAPGAGKSTFAQALAEFYADM 286 (605)
T ss_pred CHHHCCCCHHHHHHHHH------CCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 47771678999998873------36649997799997789999999999847
No 265
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.67 E-value=0.037 Score=37.00 Aligned_cols=131 Identities=16% Similarity=0.139 Sum_probs=63.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHH-HHHC-CCCCCEEEECCCCHHHCCCCCC
Q ss_conf 8898166311798988899999999998177998864312101267886799-9967-8987545300100010134212
Q gi|254780217|r 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK-QMAS-HALHDFLYLSYSLNPKTGKWRT 108 (347)
Q Consensus 31 ~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~-~i~~-~~hpd~~~i~~~~~~k~~~~~~ 108 (347)
..-|.-++|.|..|+||||++-.+|.++-... .. +.....|...+... ++.. +..-++-++... .+..
T Consensus 94 ~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g---~k-v~lvaaDt~RpaA~eQL~~la~~~~v~~~~~~----~~~d-- 163 (433)
T PRK00771 94 LLKPQTILLVGLQGSGKTTTAAKLARYFQKKG---LK-VGVICADTWRPGAYEQLKQLCEKINVPFYGDP----KEKD-- 163 (433)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CC-EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCC----CCCC--
T ss_conf 68985899973788978999999999999779---94-67850678836899999999986388731788----9999--
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHH--HHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHC
Q ss_conf 323788755443102221111210353220554240001--456777663-03434167650443357302520
Q gi|254780217|r 109 VITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA--NALLKSLEE-PPQKVLFILISHASPTILSTIRS 179 (347)
Q Consensus 109 ~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~Aa--NALLK~LEE-Pp~~t~fiLit~~~~~il~TI~S 179 (347)
.++-+++-...+. ++-|+|||-|-++..+.. +-|-++-+- -|..++|++=+.--+.-....++
T Consensus 164 --p~~i~~~a~~~~k------~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~ 229 (433)
T PRK00771 164 --AVKIVKEGLEKLK------KVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIGQQASEQAKA 229 (433)
T ss_pred --HHHHHHHHHHHHC------CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH
T ss_conf --9999999999845------69889997765210409999999999877579768998654422678999999
No 266
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.65 E-value=0.043 Score=36.47 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 63117989888999999999981
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
+-+.||.|+||+|++..+++.+-
T Consensus 37 v~ivG~sGsGKSTLl~ll~g~~~ 59 (207)
T cd03369 37 IGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999879999999998728
No 267
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.60 E-value=0.035 Score=37.19 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=31.2
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999998288981663117989888999999999981
Q gi|254780217|r 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 24 L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
+-+.+...+.|--+|+.|.+|+||+|+|..+|..|.
T Consensus 82 ~~r~~r~~~~pliILigGtsGvGKSTlA~~LA~rLg 117 (306)
T PRK04220 82 LWRRIRKSKEPIIILIGGASGVGTSTIAFELASRLG 117 (306)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999985369987999858998878999999999709
No 268
>KOG0477 consensus
Probab=95.59 E-value=0.033 Score=37.41 Aligned_cols=150 Identities=17% Similarity=0.246 Sum_probs=79.5
Q ss_pred HHHCCHHHHHHHHHHHHHCCC--C----------CEEEEECCCCCCCHHHHHHHHHHH----HHCCCCCCCCCHHHCCCC
Q ss_conf 561092999999999998288--9----------816631179898889999999999----817799886431210126
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR--M----------HHALLFEGEQGIGKATLGFRYAGH----VLQNPDFSKAPVRMCNPD 75 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~--l----------~ha~Lf~Gp~GiGK~~~A~~~A~~----llc~~~~~~~~~~~~~~~ 75 (347)
..|+||..++..+.-++-.|- - -| .|+.|.||+||..|-...++- ++.... +....|..
T Consensus 449 PsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDin-vLL~GDPGTaKSQFLKY~eK~s~RAV~tTGq-GASavGLT--- 523 (854)
T KOG0477 449 PSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDIN-VLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQ-GASAVGLT--- 523 (854)
T ss_pred CHHHCHHHHHHHHHHHHHCCCCCCCCCCCEECCCEE-EEEECCCCCCHHHHHHHHHHCCCCEEEECCC-CCCCCCEE---
T ss_conf 243145899999999985687568898744514402-8984699822899999998627531685067-75433326---
Q ss_pred CCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 78867999967898754530010001013421232378875544310222111121035322055424000145677766
Q gi|254780217|r 76 PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 (347)
Q Consensus 76 ~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE 155 (347)
+..+-| -+.++|.-.+|.. .....-||.||+.|.||.+---++=--+|
T Consensus 524 ----------a~v~Kd--PvtrEWTLEaGAL--------------------VLADkGvClIDEFDKMndqDRtSIHEAME 571 (854)
T KOG0477 524 ----------AYVRKD--PVTREWTLEAGAL--------------------VLADKGVCLIDEFDKMNDQDRTSIHEAME 571 (854)
T ss_pred ----------EEEEEC--CCCCEEEECCCEE--------------------EECCCCEEEEEHHHHHCCCCCCHHHHHHH
T ss_conf ----------887517--8653036516728--------------------97268537741211204011015999987
Q ss_pred H-------------CCCCCCEEEEECCC-----------C--CCCHHHHCEEEEEEC-----CCCCHHHHHHHH
Q ss_conf 3-------------03434167650443-----------3--573025203698864-----799989999999
Q gi|254780217|r 156 E-------------PPQKVLFILISHAS-----------P--TILSTIRSRCLSIKF-----NSLSENNLYKAL 198 (347)
Q Consensus 156 E-------------Pp~~t~fiLit~~~-----------~--~il~TI~SRc~~i~f-----~~l~~~~~~~~L 198 (347)
. -...+..|..++-. + .+-.+|.||.-.+-+ .|...+.+.+++
T Consensus 572 QQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fV 645 (854)
T KOG0477 572 QQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFV 645 (854)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHCCCCCCCHHHHCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 51201446668998875544300027777756875114330554444121113245640355813678899999
No 269
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.59 E-value=0.12 Score=32.83 Aligned_cols=136 Identities=15% Similarity=0.147 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCC
Q ss_conf 99999999998288981663117989888999999999981779988643121012678867999967898754530010
Q gi|254780217|r 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYS 98 (347)
Q Consensus 19 ~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~ 98 (347)
.....+........ ++.+++||+++||||+...+++.++.. .+++...
T Consensus 24 ~~~~~l~~~~~~~~--~i~~i~GpR~~GKTtllk~l~~~~~~~------------------------------~iy~~~~ 71 (398)
T COG1373 24 KLLPRLIKKLDLRP--FIILILGPRQVGKTTLLKLLIKGLLEE------------------------------IIYINFD 71 (398)
T ss_pred HHHHHHHHHHCCCC--CEEEEECCCCCCHHHHHHHHHHHCCCC------------------------------EEEEECC
T ss_conf 67799876503578--549998886477899999999747773------------------------------5999736
Q ss_pred CHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCC----CCC
Q ss_conf 0010134212323788755443102221111210353220554240001456777663034341676504433----573
Q gi|254780217|r 99 LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASP----TIL 174 (347)
Q Consensus 99 ~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~----~il 174 (347)
... .... -..|..+....-... +...+++|+++.. .+=.+++-.....++. -+++++++.. .+.
T Consensus 72 d~~-~~~~---~l~d~~~~~~~~~~~-----~~~yifLDEIq~v-~~W~~~lk~l~d~~~~--~v~itgsss~ll~~~~s 139 (398)
T COG1373 72 DLR-LDRI---ELLDLLRAYIELKER-----EKSYIFLDEIQNV-PDWERALKYLYDRGNL--DVLITGSSSSLLSKEIS 139 (398)
T ss_pred CCC-CCHH---HHHHHHHHHHHHHCC-----CCCEEEEEEECCC-HHHHHHHHHHHCCCCC--EEEEECCCHHHHCCCHH
T ss_conf 200-0135---677899999985222-----5745999833376-1089999999756775--09998371675413302
Q ss_pred HHHHCEEEEEECCCCCHHHHHHHH
Q ss_conf 025203698864799989999999
Q gi|254780217|r 175 STIRSRCLSIKFNSLSENNLYKAL 198 (347)
Q Consensus 175 ~TI~SRc~~i~f~~l~~~~~~~~L 198 (347)
++..=|-..+.+.|+|..+.....
T Consensus 140 ~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 140 ESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHC
T ss_conf 324998237898488889986413
No 270
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=95.59 E-value=0.016 Score=40.00 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=66.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCCCCCHHHCCCCCCCHHHH--HHHCCCCCCEEEEC-CCCHHHCCCC
Q ss_conf 88981663117989888999999999981-77998864312101267886799--99678987545300-1000101342
Q gi|254780217|r 31 GRMHHALLFEGEQGIGKATLGFRYAGHVL-QNPDFSKAPVRMCNPDPCSPFVK--QMASHALHDFLYLS-YSLNPKTGKW 106 (347)
Q Consensus 31 ~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll-c~~~~~~~~~~~~~~~~~~~~~~--~i~~~~hpd~~~i~-~~~~~k~~~~ 106 (347)
++-|+-||+.|=.|.||||++=.+|.+|| -..+... --|..|.+.|... +-.=|.+-++-++. .. .+..
T Consensus 99 ~~~P~vilmvGLQGsGKTTt~gKLA~~ll~kk~~~kv---LLva~D~yRPAA~~QL~~Lg~Q~gVpvf~h~~----~~~~ 171 (439)
T TIGR00959 99 EKRPTVILMVGLQGSGKTTTAGKLALYLLKKKEGKKV---LLVACDLYRPAAIEQLKVLGEQVGVPVFAHLG----KGQS 171 (439)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE---EEEEHHCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCC
T ss_conf 7868389973137885788999999999998638970---34032103478999999976752887110047----8889
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHH
Q ss_conf 12323788755443102221111210353220554240001
Q gi|254780217|r 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 (347)
Q Consensus 107 ~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~Aa 147 (347)
. .-.||=+|+....+.... +=|+|||-|=+|..+..
T Consensus 172 p-~~Pv~ia~~Al~~Ak~~~----~D~vI~DTAGRL~ID~~ 207 (439)
T TIGR00959 172 P-DDPVEIARQALEEAKENG----FDVVIVDTAGRLQIDEE 207 (439)
T ss_pred C-CCHHHHHHHHHHHHHHCC----CCEEEEECCCCHHHHHH
T ss_conf 8-877899999999999748----97899726751255599
No 271
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.58 E-value=0.03 Score=37.80 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=37.4
Q ss_pred CCCCCHHHHCCHH----HHH---HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 5587565610929----999---99999998288981663117989888999999999981
Q gi|254780217|r 6 FDPVYNQRLFGHE----DIE---KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 6 ~~p~~~~~i~G~~----~~~---~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
++-.+|+++.-.+ .+. ..+...+..+.-+.++.+|||.|+||+-+|-++|..|.
T Consensus 122 i~~as~~d~~~~d~~R~~a~~~a~~F~~~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La 182 (306)
T PRK08939 122 LLQATLADIDLDDLDRLDALMAALDFLEAYKPGEKVKGLYLYGDFGVGKTYLLAAIANELA 182 (306)
T ss_pred HHCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9809898648897789999999999999737698887788989999989999999999999
No 272
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.54 E-value=0.042 Score=36.60 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 816631179898889999999999
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
.+.||+.|+||+|||++|..|.-.
T Consensus 24 g~~~LV~G~pGsGKTtla~QfL~~ 47 (501)
T PRK09302 24 GRPTLVSGTAGTGKTLFALQFLHN 47 (501)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 977999838999999999999999
No 273
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=95.51 E-value=0.22 Score=30.88 Aligned_cols=92 Identities=20% Similarity=0.167 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~ 96 (347)
|.++++.+ .+.++ .++..|.|.||+.++..++..+... +. .++++-
T Consensus 8 Q~~a~~~~---~~~~~----~~i~~pTGsGKT~~~~~~i~~~~~~-------------------------~~--~~lvlv 53 (103)
T pfam04851 8 QIEAIRNL---LEKKR----GLIVMATGSGKTLTAAKLIARLLKG-------------------------KK--KVLFLV 53 (103)
T ss_pred HHHHHHHH---HHCCC----EEEEECCCCCHHHHHHHHHHHHHHC-------------------------CC--CEEEEE
T ss_conf 99999999---96398----6999589998799999999999846-------------------------99--299990
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 10001013421232378875544310222111121035322055424000145677766303434167650
Q gi|254780217|r 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 (347)
Q Consensus 97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit 167 (347)
. +.--++|-++ .+ ++|+||||....+. ..-++++..|+..++=|++
T Consensus 54 p----------~~~L~~Q~~~---~~----------lii~DE~H~~~a~~--~~~~l~~~~~~~~~lGlTA 99 (103)
T pfam04851 54 P----------RKDLLEQALE---EF----------VIIIDEAHHSSAKT--KYRKILEYFKPAFLLGLTA 99 (103)
T ss_pred C----------CHHHHHHHHH---HH----------HHHHHHHHHCCCHH--HHHHHHHHCCCCEEEEEEE
T ss_conf 8----------2999999999---65----------64601635235378--9999999577260899800
No 274
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.50 E-value=0.0098 Score=41.69 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.4
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 631179898889999999999817
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
++|.||+|+||||++-.+|.++..
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~~ 26 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999899999889999999999997
No 275
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.49 E-value=0.048 Score=36.15 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=68.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHH--HCCCCCCCCCH
Q ss_conf 1663117989888999999999981779988643121012678867999967898754530010001--01342123237
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNP--KTGKWRTVITV 112 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~--k~~~~~~~I~v 112 (347)
..++++||...||+++-+.++..++-.......||..... ...|-++......+ ..+...-.--+
T Consensus 30 ~~~iiTGpN~sGKSt~lkti~l~~~laq~G~~vpa~~~~~-------------~~~~~i~~~~~~~d~~~~~~S~F~~e~ 96 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASI-------------PLVDRIFTRIGAEDSISDGRSTFMAEL 96 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCEE-------------ECCCEEEEEECCCHHHHCCCCHHHHHH
T ss_conf 2899989988753999999999999998387372044689-------------446669998466024443535499999
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCEEEEEEC
Q ss_conf 88755443102221111210353220554240-----001456777663034341676504433-573025203698864
Q gi|254780217|r 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-----NAANALLKSLEEPPQKVLFILISHASP-TILSTIRSRCLSIKF 186 (347)
Q Consensus 113 d~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----~AaNALLK~LEEPp~~t~fiLit~~~~-~il~TI~SRc~~i~f 186 (347)
.+++.+.+... ++-.+++||.-.=|. ..+-|+|+.|-+ .++..|++||..+ .-++.-..+.+...|
T Consensus 97 ~~~~~i~~~~~------~~slvliDE~~~gT~~~eg~~la~a~l~~l~~--~~~~~i~tTH~~~L~~~~~~~~~~~~~~~ 168 (202)
T cd03243 97 LELKEILSLAT------PRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE--KGCRTLFATHFHELADLPEQVPGVKNLHM 168 (202)
T ss_pred HHHHHHHHHCC------CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHCCCCEEEEEE
T ss_conf 99999998677------77724205234799867879999999999985--36849998253888875313897499999
Q ss_pred C
Q ss_conf 7
Q gi|254780217|r 187 N 187 (347)
Q Consensus 187 ~ 187 (347)
.
T Consensus 169 ~ 169 (202)
T cd03243 169 E 169 (202)
T ss_pred E
T ss_conf 9
No 276
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.0029 Score=45.89 Aligned_cols=134 Identities=12% Similarity=0.180 Sum_probs=63.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHH-HCCCCCCCCCHHHCCCCCCCHHH-HHHHCCCCCCEEEECCCCHHHCCCCCCCCC
Q ss_conf 8166311798988899999999998-17799886431210126788679-999678987545300100010134212323
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHV-LQNPDFSKAPVRMCNPDPCSPFV-KQMASHALHDFLYLSYSLNPKTGKWRTVIT 111 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~l-lc~~~~~~~~~~~~~~~~~~~~~-~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~ 111 (347)
+.-+.|.||.|+||||+.-.+|... +..... ....+....|..+... -++... -+++-++ ....-+
T Consensus 174 ~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k-~~~V~lit~DtyRigAveQLkty--a~il~vp---------~~v~~~ 241 (388)
T PRK12723 174 KRIFILVGPTGVGKTTTIAKLAAIYGINSDDK-SLNIKIITIDNYRIGAKKQIQTY--GDIMGIP---------VKAIES 241 (388)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEEEECCCCHHHHHHHHHH--HHHHCCC---------EEEECC
T ss_conf 62899989988757879999999999862676-77379998078758899999999--9997880---------698578
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHH--HHHHHHHHHC-C-CCCCEEEEECCCCCCCHHHHCEEEEEE
Q ss_conf 788755443102221111210353220554240001--4567776630-3-434167650443357302520369886
Q gi|254780217|r 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA--NALLKSLEEP-P-QKVLFILISHASPTILSTIRSRCLSIK 185 (347)
Q Consensus 112 vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~Aa--NALLK~LEEP-p-~~t~fiLit~~~~~il~TI~SRc~~i~ 185 (347)
.++.+..... ..++.+++||-|-+-..+.. .-|-+.++.- | ..+++.+.++...+-+..|..|-..+.
T Consensus 242 ~~dl~~~l~~------~~~~D~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~~f~~~~ 313 (388)
T PRK12723 242 FKDLKEEITQ------SKDFDLVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDIKEIFHQFSPFS 313 (388)
T ss_pred HHHHHHHHHH------HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 8999999997------24999999958998856899999999999741898459999879899999999999842799
No 277
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.007 Score=42.87 Aligned_cols=134 Identities=15% Similarity=0.103 Sum_probs=67.2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCC-CCHHH
Q ss_conf 66311798988899999999998177998864312101267886799996789875453001000101342123-23788
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTV-ITVDE 114 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~-I~vd~ 114 (347)
-+.+.||.|+||+|++..++..+-...+ .-.-.|..-........+....-...+...+.... +.+ .|--|
T Consensus 30 ~i~ivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv-------~eNiLSgGq 101 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSG-EILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTI-------RENILSGGQ 101 (171)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCH-------HHHCCCHHH
T ss_conf 9999999998399999999767758974-89999999885998998631899966684375779-------997744889
Q ss_pred HHHHHHHCCC-CCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 7554431022-2111121035322055-4240001456777663034341676504433573025203698864
Q gi|254780217|r 115 IRRIRYFLSL-TANTGYWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 115 IR~l~~~~~~-~~~~~~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
-+ ++.. ++.....+|+|+||+- .|...+...+.+.|++-.++..+|++||+++.+ ..|-++-+
T Consensus 102 ~Q----ri~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~Tvi~vtH~~~~~-----~~~D~v~~ 166 (171)
T cd03228 102 RQ----RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI-----RDADRIIV 166 (171)
T ss_pred HH----HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH-----HHCCEEEE
T ss_conf 99----9999999974899899957766799899999999999980999899995799999-----70999999
No 278
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.41 E-value=0.034 Score=37.30 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.1
Q ss_pred EEECCCCCCCHHHHHHHHHHHH
Q ss_conf 6311798988899999999998
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+-+.||.|+||+|++..++..+
T Consensus 33 v~ivG~sGsGKSTLl~ll~gl~ 54 (221)
T cd03244 33 VGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999998999999996797
No 279
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.40 E-value=0.033 Score=37.48 Aligned_cols=127 Identities=18% Similarity=0.116 Sum_probs=54.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCH-------HHHHHHCCCCCCEEEECCCCHH----HCCC
Q ss_conf 6311798988899999999998177998864312101267886-------7999967898754530010001----0134
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP-------FVKQMASHALHDFLYLSYSLNP----KTGK 105 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~hpd~~~i~~~~~~----k~~~ 105 (347)
.++.+|.|.|||..+...+...+....... +--+ .+... .++.... .+.+...+...... +...
T Consensus 3 ~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~--~lil--~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 77 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDSLKGGQ--VLVL--APTRELANQVAERLKELFG-EGIKVGYLIGGTSIKQQEKLLS 77 (144)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCE--EEEE--CCHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHC
T ss_conf 999889971799999999999997568976--9997--4679999999999999748-8717999961363677898745
Q ss_pred CCCCCCHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHCCHHHHHH-HHHHHHHCCCCCCEEEEEC
Q ss_conf 21232378875544310222-111121035322055424000145-6777663034341676504
Q gi|254780217|r 106 WRTVITVDEIRRIRYFLSLT-ANTGYWRVIMIDPVDGMNRNAANA-LLKSLEEPPQKVLFILISH 168 (347)
Q Consensus 106 ~~~~I~vd~IR~l~~~~~~~-~~~~~~Ki~IId~ad~ln~~AaNA-LLK~LEEPp~~t~fiLit~ 168 (347)
....|-|-....+...+... -....++++|+||||.|..+..-. .+..+..-+++..+++.|-
T Consensus 78 ~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lSA 142 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSA 142 (144)
T ss_pred CCCCEEECCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCEEEECC
T ss_conf 89849982889999999738765551009999888876437969999999996799994899828
No 280
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.37 E-value=0.024 Score=38.57 Aligned_cols=52 Identities=25% Similarity=0.318 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEE
Q ss_conf 121035322055-42400014567776630343416765044335730252036988
Q gi|254780217|r 129 GYWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSI 184 (347)
Q Consensus 129 ~~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i 184 (347)
.+-||.|+|||= .+..++.....-.|-++..+..+|+|||++ +||++==+.+
T Consensus 626 ~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl----~ti~~adrIi 678 (709)
T COG2274 626 SKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRL----STIRSADRII 678 (709)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC----HHHHHCCEEE
T ss_conf 6999899707422369867999999999984588699997661----6864025799
No 281
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.37 E-value=0.031 Score=37.65 Aligned_cols=29 Identities=10% Similarity=0.328 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 89816631179898889999999999817
Q gi|254780217|r 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 32 ~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
+-.+-+++.|+||+||++++..+|..+..
T Consensus 11 ~~G~L~vi~a~~g~GKS~~~~~la~~~a~ 39 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAK 39 (242)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99818999968999999999999999999
No 282
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.34 E-value=0.25 Score=30.40 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=17.3
Q ss_pred CEEEEECCCCCCCHHHHHHHHH
Q ss_conf 8166311798988899999999
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYA 55 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A 55 (347)
..-++++||+|+||+|+..++.
T Consensus 2 G~LivvsgPSGaGK~Tli~~l~ 23 (184)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALR 23 (184)
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 7099998998699999999998
No 283
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.32 E-value=0.044 Score=36.40 Aligned_cols=165 Identities=17% Similarity=0.174 Sum_probs=80.7
Q ss_pred CCCCHHHHCCHHHHH------HHHHHHHHCCCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCC------
Q ss_conf 587565610929999------9999999828898-166311798988899999999998177998864312101------
Q gi|254780217|r 7 DPVYNQRLFGHEDIE------KFLSQYYCSGRMH-HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCN------ 73 (347)
Q Consensus 7 ~p~~~~~i~G~~~~~------~~L~~~~~~~~l~-ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~------ 73 (347)
+|..++++-.+ +.. ..|.+.+-.|=+| -..|+.|.|||||.|+.+..|..+= .....-+.+|+=+
T Consensus 57 ~~~~l~~v~~~-~~~R~~Tgi~ElDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la-~~~~vLYvSGEES~~Qik~ 134 (454)
T PRK11823 57 KPVKLSDVEAE-EEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALA-AGGKVLYVSGEESLQQIKL 134 (454)
T ss_pred CCEEHHHCCCC-CCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCHHHHHHHH
T ss_conf 75652442566-655323785566522158720664899507998889999999999985-5995799815015789999
Q ss_pred ----------------CCCCCHHHHHHHCCCCCCEEEECCC---CHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf ----------------2678867999967898754530010---001013421232378875544310222111121035
Q gi|254780217|r 74 ----------------PDPCSPFVKQMASHALHDFLYLSYS---LNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVI 134 (347)
Q Consensus 74 ----------------~~~~~~~~~~i~~~~hpd~~~i~~~---~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~ 134 (347)
..........+ ....|++++|+.. +.+.. ....=+|-|||+.-..+...+=..+.-++
T Consensus 135 RA~RLg~~~~~l~l~~et~l~~Il~~i-~~~~P~~lIIDSIQT~~~~~~--~s~pGsvsQVre~a~~L~~~AK~~~i~~~ 211 (454)
T PRK11823 135 RAERLGLPSDNLYLLAETNLEDILATI-EEEKPDLVVIDSIQTMYSPEL--ESAPGSVSQVRECAAELTRLAKQSGIAVF 211 (454)
T ss_pred HHHHHCCCCCCCEEEECCCHHHHHHHH-HHHCCCEEEEECHHEEEECCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 999758888873788536899999999-860998899943111541566--77899789999999999999974498289
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEE--ECCCCCCCHHHHCE
Q ss_conf 32205542400014567776630343416765--04433573025203
Q gi|254780217|r 135 MIDPVDGMNRNAANALLKSLEEPPQKVLFILI--SHASPTILSTIRSR 180 (347)
Q Consensus 135 IId~ad~ln~~AaNALLK~LEEPp~~t~fiLi--t~~~~~il~TI~SR 180 (347)
+| -..|++.+=|=-|+||--- .|++-|= .++..++|-+++-|
T Consensus 212 lV---GHVTKdG~iAGPkvLEHmV-DtVl~fEGd~~~~~RiLR~~KNR 255 (454)
T PRK11823 212 LV---GHVTKEGAIAGPRVLEHMV-DTVLYFEGDRHSRFRILRAVKNR 255 (454)
T ss_pred EE---EEECCCCCCCCCHHHHHHH-CEEEEECCCCCCCCEEEEEECCC
T ss_conf 99---9772677646614522201-04687515766550245631246
No 284
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=95.31 E-value=0.029 Score=37.89 Aligned_cols=127 Identities=24% Similarity=0.359 Sum_probs=74.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEE--EECCCCHHHCCCCCCCCCH
Q ss_conf 16631179898889999999999817799886431210126788679999678987545--3001000101342123237
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL--YLSYSLNPKTGKWRTVITV 112 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~--~i~~~~~~k~~~~~~~I~v 112 (347)
| .-|+|.||+||+|.|..+|.-|..-.-.-.+ ...+ -+.-|+. +|... .+|
T Consensus 60 h-m~ftG~PGtGkttva~~m~~~l~~lGy~r~G---~~~~------------~trddlvGqy~Ght-aPk---------- 112 (284)
T TIGR02880 60 H-MSFTGNPGTGKTTVALRMAQILHRLGYVRKG---HLVS------------VTRDDLVGQYIGHT-APK---------- 112 (284)
T ss_pred E-EEECCCCCCCHHHHHHHHHHHHHHCCCCCCC---CEEE------------EEHHHHHHHHHCCC-CCH----------
T ss_conf 6-7751689872489999999999871540036---2678------------53001311221257-722----------
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC---------HHHHHHHHHHHHHCCCCCCEEEEECCCCCC------CHHH
Q ss_conf 8875544310222111121035322055424---------000145677766303434167650443357------3025
Q gi|254780217|r 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMN---------RNAANALLKSLEEPPQKVLFILISHASPTI------LSTI 177 (347)
Q Consensus 113 d~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln---------~~AaNALLK~LEEPp~~t~fiLit~~~~~i------l~TI 177 (347)
.+++. +-..|+ |.+||+|-++- .+|-..||..+|.--...++||.- +.+++ -|-+
T Consensus 113 --tke~l-----k~a~GG--vlfideayyly~P~nerdyG~eaieillq~men~r~~lvvi~aG-y~~rm~~f~~snPG~ 182 (284)
T TIGR02880 113 --TKEVL-----KRAMGG--VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAG-YKDRMDSFFESNPGL 182 (284)
T ss_pred --HHHHH-----HHHCCC--EEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC-CHHHHHHHHHCCCCH
T ss_conf --68999-----874287--36642203321776410223799999999872365537888717-078888875117862
Q ss_pred HCEE-EEEECCCCCHHHHHHHH
Q ss_conf 2036-98864799989999999
Q gi|254780217|r 178 RSRC-LSIKFNSLSENNLYKAL 198 (347)
Q Consensus 178 ~SRc-~~i~f~~l~~~~~~~~L 198 (347)
.||. .++.|+--..+++..+-
T Consensus 183 ~sr~a~h~~fPdy~~~~l~~ia 204 (284)
T TIGR02880 183 SSRVAHHVDFPDYSEEELLAIA 204 (284)
T ss_pred HHHHHHHCCCCCCCHHHHHHHH
T ss_conf 4677643158887767899999
No 285
>PRK10867 signal recognition particle protein; Provisional
Probab=95.28 E-value=0.048 Score=36.11 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=50.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHH-HHHC-CCCCCEEEECCCCHHHCCCCCCC
Q ss_conf 898166311798988899999999998177998864312101267886799-9967-89875453001000101342123
Q gi|254780217|r 32 RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK-QMAS-HALHDFLYLSYSLNPKTGKWRTV 109 (347)
Q Consensus 32 ~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~-~i~~-~~hpd~~~i~~~~~~k~~~~~~~ 109 (347)
+-|..++|.|-.|+||||++-.+|.++-.... .++..+..|...+... ++.. +..-++-++... .+..
T Consensus 98 ~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~---k~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~----~~~d--- 167 (453)
T PRK10867 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHK---KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSD----VGQK--- 167 (453)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC---CEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCC----CCCC---
T ss_conf 99969999746888518589999999997389---8379855887705899999999985198043678----8998---
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH
Q ss_conf 2378875544310222111121035322055424000
Q gi|254780217|r 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 (347)
Q Consensus 110 I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A 146 (347)
.++=+++-++.+ -..++-|+|||-|-++..+.
T Consensus 168 -p~~ia~~a~~~a----k~~~~DvvivDTAGRl~~d~ 199 (453)
T PRK10867 168 -PVDIVNAALKEA----KLKFYDVLLVDTAGRLHVDE 199 (453)
T ss_pred -HHHHHHHHHHHH----HHCCCCEEEEECCCCHHCCH
T ss_conf -899999999999----97799999997876012108
No 286
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=95.24 E-value=0.29 Score=29.81 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 92999999999998288981663117989888999999999981
Q gi|254780217|r 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 16 G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
.|..++..+.+ | +..+..+|.|.||+..+..-+-..+
T Consensus 3 ~Q~~~i~~~~~----g---~~~iv~~pTGsGKT~~~~~~~l~~~ 39 (167)
T pfam00270 3 IQAEAIPAILE----G---KDVLVQAPTGSGKTLAFLLPALQAL 39 (167)
T ss_pred HHHHHHHHHHC----C---CCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 59999999976----9---9789988999758999999999998
No 287
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.23 E-value=0.093 Score=33.82 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=18.1
Q ss_pred EEEECCCCCCCHHHHHHHHHH
Q ss_conf 663117989888999999999
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAG 56 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~ 56 (347)
-+-+.||.|+||+|+.+.++.
T Consensus 37 ~v~iiG~sGsGKSTLl~~i~G 57 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999409999999966
No 288
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.23 E-value=0.028 Score=38.05 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 8981663117989888999999999981
Q gi|254780217|r 32 RMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 32 ~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
.-|+.++|.||.|+||||++=.+|.++.
T Consensus 73 ~~~~vI~lvG~~G~GKTTT~AKLA~~~~ 100 (270)
T PRK06731 73 KEVQTIALIGPTGVGKTTTLAKMAWQFH 100 (270)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9981899988898988999999999998
No 289
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.22 E-value=0.01 Score=41.55 Aligned_cols=146 Identities=17% Similarity=0.144 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHCC---------CCCEEEEECCCCCCCHHHHHHHHHH-HHHCCCCCCCCCHHHCCCCCCCHH-HHHHHC
Q ss_conf 99999999999828---------8981663117989888999999999-981779988643121012678867-999967
Q gi|254780217|r 18 EDIEKFLSQYYCSG---------RMHHALLFEGEQGIGKATLGFRYAG-HVLQNPDFSKAPVRMCNPDPCSPF-VKQMAS 86 (347)
Q Consensus 18 ~~~~~~L~~~~~~~---------~l~ha~Lf~Gp~GiGK~~~A~~~A~-~llc~~~~~~~~~~~~~~~~~~~~-~~~i~~ 86 (347)
++++..|.+.+... +-+.-+.|.||.|+||||++-.+|. +.+-.... ..+.-+.|.+.-. .-++..
T Consensus 185 ~~~~~~l~~~L~~~l~~~~~~~~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~---kV~lIT~DtyRigA~eQLk~ 261 (412)
T PRK05703 185 REAWRYLLELLANMLPTRVEDILEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKD---KVALITLDTYRIGAVEQLKT 261 (412)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC---EEEEEEECCCCHHHHHHHHH
T ss_conf 999999999999757888766545673699988888756769999999999972998---17999837677779999999
Q ss_pred ---CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-HHHHHHHH-HHH-HCCCC
Q ss_conf ---8987545300100010134212323788755443102221111210353220554240-00145677-766-30343
Q gi|254780217|r 87 ---HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-NAANALLK-SLE-EPPQK 160 (347)
Q Consensus 87 ---~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-~AaNALLK-~LE-EPp~~ 160 (347)
-..-.+.++. +-++.+++... ..++.+|+||-|-+=.. .....-|| .++ .||..
T Consensus 262 Ya~ilgvp~~v~~--------------~~~~l~~al~~------~~~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~~~~ 321 (412)
T PRK05703 262 YAKIMGIPVKVAY--------------DPKELAKALEQ------LANCDLILIDTAGRSQRDPRLISELKALIENSKPID 321 (412)
T ss_pred HHHHCCCEEEEEC--------------CHHHHHHHHHH------HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9997197379847--------------99999999987------158997999689889789999999999986248871
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 41676504433573025203698864
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
++++|-++....-+..|.+|...+.+
T Consensus 322 ~~LVlsat~~~~dl~~i~~~f~~~~~ 347 (412)
T PRK05703 322 VYLVLSATTKYRDLKDIVKHFSRLPL 347 (412)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 89997598998999999998467999
No 290
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.20 E-value=0.043 Score=36.49 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=32.0
Q ss_pred CHHHHHHHHH-HCCHHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 1035322055-42400014567776630343-41676504433573025203698864
Q gi|254780217|r 131 WRVIMIDPVD-GMNRNAANALLKSLEEPPQK-VLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 131 ~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~-t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
-+|.|+|||- .+..++...+.+.+.+-.++ |.++ |+|++ .||+. |-++-+
T Consensus 484 ~~iLILDEaTS~lD~~tE~~I~~~l~~l~~~rT~ii-IaHRl----sti~~-aD~IiV 535 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKKLLKGRTTLI-IAHRL----STIKN-ADRIIV 535 (567)
T ss_pred CCEEEECCHHHCCCHHHHHHHHHHHHHHHCCCEEEE-EECCC----CHHHH-CCEEEE
T ss_conf 986887231102677569999999999826987999-86672----25874-888999
No 291
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.19 E-value=0.06 Score=35.35 Aligned_cols=120 Identities=16% Similarity=0.098 Sum_probs=61.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
++.++++||.+.||+++-+.+|-.++-.......||......+. |-++......+. -....+--.-
T Consensus 30 ~~~~iiTGpN~sGKSt~lk~i~l~~ilaq~G~~vpA~~~~~~~~-------------d~i~~~i~~~d~-~~~~~StF~~ 95 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLV-------------DRIFTRIGARDD-IMKGESTFMV 95 (218)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCEEECC-------------CEEEEEECCCCC-HHHHHHHHHH
T ss_conf 40899989998873899999999999998288430146477346-------------648997458661-4311506999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 8755443102221111210353220554240-----001456777663034341676504433
Q gi|254780217|r 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-----NAANALLKSLEEPPQKVLFILISHASP 171 (347)
Q Consensus 114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----~AaNALLK~LEEPp~~t~fiLit~~~~ 171 (347)
|++++..-+... +..-.+++||.-+=|. +.+-|+|+.|-+- .++.++++||..+
T Consensus 96 e~~~~~~il~~~---~~~sLvllDE~~~GT~~~eg~ala~aile~L~~~-~~~~~i~tTH~~e 154 (218)
T cd03286 96 ELSETANILRHA---TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKK-VKCLTLFSTHYHS 154 (218)
T ss_pred HHHHHHHHHHHC---CCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCHH
T ss_conf 999999999867---9985010255468998116799999999999863-7976999767289
No 292
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=95.14 E-value=0.018 Score=39.62 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.0
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 6311798988899999999998177
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
+.|+||+|+||+++|..+|+.++..
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~ 25 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDH 25 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 9897999898899999999999998
No 293
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=95.14 E-value=0.12 Score=32.91 Aligned_cols=168 Identities=20% Similarity=0.206 Sum_probs=90.1
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC---------CCCCHHHCCCCCCCHHHHHHHCCCCC
Q ss_conf 999999999828898166311798988899999999998177998---------86431210126788679999678987
Q gi|254780217|r 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF---------SKAPVRMCNPDPCSPFVKQMASHALH 90 (347)
Q Consensus 20 ~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~hp 90 (347)
+++.|..+ .+.|+ .+++|=||+||+|..++++.---..... .+.+-..|. |-.+..|++..
T Consensus 355 Qk~AL~~~-~~~Kv---~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaA--PTGrAAkRl~E---- 424 (769)
T TIGR01448 355 QKEALKTA-IQDKV---VILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAA--PTGRAAKRLAE---- 424 (769)
T ss_pred HHHHHHHH-HCCCE---EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC--CCHHHHHHCCC----
T ss_conf 99999998-60948---9985778886168999999999871687755312456776488737--74378885110----
Q ss_pred CEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCC-CCCC------CCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 5453001000101342123237887554431022-2111------12103532205542400014567776630343416
Q gi|254780217|r 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL-TANT------GYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLF 163 (347)
Q Consensus 91 d~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~-~~~~------~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~f 163 (347)
-+|+.. -.|-.+..+-.. .+.. -.+..+||||.-+|-.-=++.||-.+ |+++.+
T Consensus 425 -----------~TG~~a-----~TIHRLlG~~~~~~~~~k~~~~~~~~DL~IvDE~SM~Dt~L~~~lL~a~---P~~a~l 485 (769)
T TIGR01448 425 -----------VTGLEA-----LTIHRLLGYGSDTKSENKNLEDPIDADLLIVDESSMVDTWLASSLLAAV---PDHARL 485 (769)
T ss_pred -----------CCCCHH-----HHHHHHHCCCCCCCCCCHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHC---CCCCEE
T ss_conf -----------026212-----3477863689888732110113478776998146218899999998617---977779
Q ss_pred EEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCH--HHHHHHHCCC
Q ss_conf 7650443357302520369886479998999999997278889678999999759897--8999881457
Q gi|254780217|r 164 ILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSV--ARAIKILHYD 231 (347)
Q Consensus 164 iLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~--~~A~~ll~~~ 231 (347)
||+= +.+.|| +++.-..-+=|-+ ...++.-.+..+++-+.||+ ..|-.+.++.
T Consensus 486 llVG-D~DQLP-------------SV~pG~VL~DLi~-s~~iP~~~LT~vyRQ~~~S~Ii~~Ah~~~~G~ 540 (769)
T TIGR01448 486 LLVG-DADQLP-------------SVGPGQVLKDLIQ-SKVIPVTRLTKVYRQAEGSSIITLAHKILQGE 540 (769)
T ss_pred EEEC-CCCCCC-------------CCCCCHHHHHHHH-CCCCCEEECCCEEEECCCCHHHHHHHHHHCCC
T ss_conf 8883-768889-------------8864408999984-68866121211124113664678889873178
No 294
>KOG4658 consensus
Probab=95.13 E-value=0.24 Score=30.49 Aligned_cols=191 Identities=12% Similarity=0.085 Sum_probs=90.6
Q ss_pred CHHHH-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC--HHHHHHHC
Q ss_conf 56561-0929999999999982889816631179898889999999999817799886431210126788--67999967
Q gi|254780217|r 10 YNQRL-FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS--PFVKQMAS 86 (347)
Q Consensus 10 ~~~~i-~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~--~~~~~i~~ 86 (347)
-++.. +|+++.++.+.+.+......+ .=+||..|+||||+|+.+-....--....+..-+-|.|-... ..-..|..
T Consensus 155 ~~~~~~VG~e~~~ekl~~~L~~d~~~i-vgi~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658 155 IQSESDVGLETMLEKLWNRLMEDDVGI-VGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE 233 (889)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 773125468899999999840479968-9998897034999999984133122357874999997763108889999999
Q ss_pred CCCCCEEEECCCCHHHCCCCCCCCCHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC----C
Q ss_conf 8987545300100010134212323788755-4431022211112103532205542400014567776630343----4
Q gi|254780217|r 87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK----V 161 (347)
Q Consensus 87 ~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~-l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~----t 161 (347)
.+...+..|.++ . +++... +.+.+. +++=++++|++=. ..+ ++-+.-|.+. +
T Consensus 234 ----~l~~~~~~~~~~------~--~~~~~~~i~~~L~-----~krfllvLDDIW~--~~d----w~~I~~~~p~~~~g~ 290 (889)
T KOG4658 234 ----RLGLLDEEWEDK------E--EDELASKLLNLLE-----GKRFLLVLDDIWE--EVD----WDKIGVPFPSRENGS 290 (889)
T ss_pred ----HHCCCCCCCCCC------C--HHHHHHHHHHHHC-----CCCEEEEEECCCC--CCC----HHHHCCCCCCCCCCE
T ss_conf ----844687100010------2--8899999999855-----6855999825675--012----877189998756872
Q ss_pred CEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHC-CC------CCHHHHHHHHHHCCCCHHHHH
Q ss_conf 16765044335730252036988647999899999999727-88------896789999997598978999
Q gi|254780217|r 162 LFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLK-IM------GWDSKRDFVKIAAYGSVARAI 225 (347)
Q Consensus 162 ~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~-~~------~~~~~~~~~~~~s~Gs~~~A~ 225 (347)
..+|+|.+. .+-.-.-.++-.++..-++.++.=..+...- .. ..+..+..++.-+.|-|-...
T Consensus 291 KvvlTTRs~-~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~ 360 (889)
T KOG4658 291 KVVLTTRSE-EVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALN 360 (889)
T ss_pred EEEEEECCH-HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 899996458-7763324778730054168300299999873664444452079998999877289379999
No 295
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=95.11 E-value=0.079 Score=34.36 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=75.2
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 5587565610929999999999982-889816631179898889999999999817799886431210126788679999
Q gi|254780217|r 6 FDPVYNQRLFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM 84 (347)
Q Consensus 6 ~~p~~~~~i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i 84 (347)
..+-+|++|+|............+. -+-+-..|+.|..|+||..+|+++- ...+-.++|.-.-++.+-- ...+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH----~~S~R~~~PFIaiNCaAiP--e~Ll 312 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIH----NLSPRANGPFIAINCAAIP--ETLL 312 (560)
T ss_pred CCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH----HCCCCCCCCEEEEECCCCC--HHHH
T ss_conf 453661002058999999999998633899828995378866899999987----4484347980787643388--8888
Q ss_pred HC---CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC----
Q ss_conf 67---89875453001000101342123237887554431022211112103532205542400014567776630----
Q gi|254780217|r 85 AS---HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP---- 157 (347)
Q Consensus 85 ~~---~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP---- 157 (347)
++ |..+.-|. . ..++|+.+ .+.. ..|| -+++|++-.|...-|-.||..|+|=
T Consensus 313 ESELFGye~GAFT-G---A~~~GK~G-------------lfE~--A~gG--TLFLDEIgempl~LQaKLLRVLQEkei~r 371 (560)
T COG3829 313 ESELFGYEKGAFT-G---ASKGGKPG-------------LFEL--ANGG--TLFLDEIGEMPLPLQAKLLRVLQEKEIER 371 (560)
T ss_pred HHHHHCCCCCCCC-C---CCCCCCCC-------------CEEE--CCCC--EEEEHHHCCCCHHHHHHHHHHHHHCEEEE
T ss_conf 8887276776424-6---44579976-------------0544--1698--37712320399899999999875353785
Q ss_pred -------CCCCCEEEEEC
Q ss_conf -------34341676504
Q gi|254780217|r 158 -------PQKVLFILISH 168 (347)
Q Consensus 158 -------p~~t~fiLit~ 168 (347)
|-+..+|=.||
T Consensus 372 vG~t~~~~vDVRIIAATN 389 (560)
T COG3829 372 VGGTKPIPVDVRIIAATN 389 (560)
T ss_pred CCCCCCEEEEEEEEECCC
T ss_conf 378875356789994257
No 296
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.10 E-value=0.04 Score=36.72 Aligned_cols=27 Identities=11% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 898166311798988899999999998
Q gi|254780217|r 32 RMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 32 ~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+-..-+++.|+||.||++++..+|...
T Consensus 17 ~~G~l~vi~g~pg~GKS~~~~~~a~~~ 43 (186)
T pfam03796 17 QKGDLIIIAARPSMGKTAFALNIARNA 43 (186)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 888179999679998799999999999
No 297
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.08 E-value=0.012 Score=41.04 Aligned_cols=130 Identities=20% Similarity=0.151 Sum_probs=64.1
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC---CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCC-CH
Q ss_conf 63117989888999999999981779988643121012678---867999967898754530010001013421232-37
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC---SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVI-TV 112 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~---~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I-~v 112 (347)
+-+.||.|+||+|++..++..+-.. .+..-....+.. ....+....---.|...+.. ....+| |-
T Consensus 31 vaIvG~sGsGKSTLl~ll~gl~~p~----~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~-------ti~eNiLSG 99 (173)
T cd03246 31 LAIIGPSGSGKSTLARLILGLLRPT----SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-------SIAENILSG 99 (173)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCC----CCEEEECCEECCCCCHHHHHCCEEEEECCCEECCC-------CHHHHCCCH
T ss_conf 9999999980999999996666679----99899999993328998984208999088836777-------589976769
Q ss_pred HHH-HHHHHHCCCCCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 887-5544310222111121035322055-42400014567776630-34341676504433573025203698864
Q gi|254780217|r 113 DEI-RRIRYFLSLTANTGYWRVIMIDPVD-GMNRNAANALLKSLEEP-PQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 113 d~I-R~l~~~~~~~~~~~~~Ki~IId~ad-~ln~~AaNALLK~LEEP-p~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
-|- |-.+. +....+-+|+|+||+- .+...+...+...|++- -++...|++||+++ +++ +|-++-+
T Consensus 100 GQkQRvalA----Ral~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH~~~----~~~-~aD~Iiv 167 (173)
T cd03246 100 GQRQRLGLA----RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE----TLA-SADRILV 167 (173)
T ss_pred HHHHHHHHH----HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH----HHH-HCCEEEE
T ss_conf 999999999----9982799999996876689989999999999978648989999847999----998-4999999
No 298
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=95.02 E-value=0.049 Score=36.05 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=18.3
Q ss_pred EEECCCCCCCHHHHHHHHHHH
Q ss_conf 631179898889999999999
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
++|+||.|+||++++.++.+.
T Consensus 4 ivl~GPSG~GK~tl~~~L~~~ 24 (182)
T pfam00625 4 IVLSGPSGVGKSHIKKALLDE 24 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999898999999999999984
No 299
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.00 E-value=0.024 Score=38.61 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 121035322055-4240001456777663034341676504433
Q gi|254780217|r 129 GYWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASP 171 (347)
Q Consensus 129 ~~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~ 171 (347)
.+-+|+|+||+- .|..++...+++.|.+- .+..|++||++.
T Consensus 108 ~~p~iliLDEpTs~LD~~~~~~l~~~l~~~--~~Tvi~VtH~~~ 149 (166)
T cd03223 108 HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCHH
T ss_conf 499999975853328999999999999977--998999943469
No 300
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.0099 Score=41.65 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=70.2
Q ss_pred EEEECCCCCCCHHHHHHHHH-HHHHCCCCCCCCCHHHCCCCCCCHHH-HHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 66311798988899999999-99817799886431210126788679-99967898754530010001013421232378
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFV-KQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A-~~llc~~~~~~~~~~~~~~~~~~~~~-~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
-+.|.||-|+||||+.=.+| ++.+-... ..+.-+.|.++-.. -++.. .-+++-++ .-.|.
T Consensus 225 vi~lVGPTGVGKTTTiAKLAA~~~l~~~k----kVaLIT~DTYRIgAvEQLkt--Ya~Il~iP------------v~vv~ 286 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGK----SVSLYTTDNYRIAAIEQLKR--YADTMGMP------------FYPVK 286 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCC----EEEEEECCCCCHHHHHHHHH--HHHHHCCC------------EEEEE
T ss_conf 99998999988899999999999997499----27999526653779999999--99985994------------59951
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHH-----HHHHHHHHH-HHCCCCCCEEEEECCCCCCCHHHHCEEEEEECC
Q ss_conf 87554431022211112103532205542400-----014567776-630343416765044335730252036988647
Q gi|254780217|r 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN-----AANALLKSL-EEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 (347)
Q Consensus 114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~-----AaNALLK~L-EEPp~~t~fiLit~~~~~il~TI~SRc~~i~f~ 187 (347)
+..++..-+.. .++.+|+||-|-+-..+ -..+|+... |.++-.+++.|.++...+-+..|..|-..+.+.
T Consensus 287 ~~~el~~al~~----~~~DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~~~ 362 (432)
T PRK12724 287 DIKKFKETLAR----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYR 362 (432)
T ss_pred CHHHHHHHHHH----CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 89999999985----69999999299989789999999999998636678851799997889989999999984269998
No 301
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.96 E-value=0.099 Score=33.57 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=22.0
Q ss_pred CCCCEEEE--ECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 88981663--1179898889999999999817
Q gi|254780217|r 31 GRMHHALL--FEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 31 ~~l~ha~L--f~Gp~GiGK~~~A~~~A~~llc 60 (347)
|=+|-..+ ++||+|.||+++|..++.....
T Consensus 55 GGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~ 86 (279)
T COG0468 55 GGLPRGRITEIYGPESSGKTTLALQLVANAQK 86 (279)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 88655358998468876546689999888653
No 302
>TIGR00764 lon_rel ATP-dependent protease, putative; InterPro: IPR004663 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the archaeal lon protease homologs, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein conserved region.; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0030163 protein catabolic process.
Probab=94.94 E-value=0.043 Score=36.51 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=45.6
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 5587565610929999999999982889816631179898889999999999817
Q gi|254780217|r 6 FDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 6 ~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
..|+-.++++||+++.+.+..+....| | .++.|.||+||..++.+.+..+-.
T Consensus 13 p~p~l~d~~~g~~~~~~~~~~~~~~~~--~-~~l~g~pg~g~~~~~~~~~~~l~~ 64 (662)
T TIGR00764 13 PEPRLIDQVIGQEEAVEVIKKAAKQKR--N-VLLLGEPGVGKSMLAKAVAELLPD 64 (662)
T ss_pred CCHHHHHHHHCCHHHHHHHHHHHHHCC--C-EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 641456666140468899998754103--3-578617775457888888874133
No 303
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=94.94 E-value=0.088 Score=33.99 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=27.3
Q ss_pred HHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999999828-89816631179898889999999999817
Q gi|254780217|r 23 FLSQYYCSG-RMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 23 ~L~~~~~~~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
.|......+ ---+.+.||||+.+||+.+|.+++..+-+
T Consensus 101 ~l~~w~~k~~~krN~i~~~Gp~~TGks~la~ai~~~~~~ 139 (271)
T pfam01057 101 VLLAWLSKQGGKRNTVWFYGPASTGKTNLAQAIAHAVPL 139 (271)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 999998447888756999889876789999999986895
No 304
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.93 E-value=0.026 Score=38.31 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 29999999999982889816631179898889999999999817799
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD 63 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~ 63 (347)
.+..++.|... ..++|+.||||.||+|||.++|.++.....
T Consensus 252 ~dkl~eRL~er------aeGILIAG~PGaGKsTFaqAlAefy~~~Gk 292 (604)
T COG1855 252 SDKLKERLEER------AEGILIAGAPGAGKSTFAQALAEFYASQGK 292 (604)
T ss_pred CHHHHHHHHHH------HCCEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 98999998864------164699569999746899999999986696
No 305
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.89 E-value=0.071 Score=34.76 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=55.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEE-EECCCCHHHCCCCCCCCCHHH
Q ss_conf 6631179898889999999999817799886431210126788679999678987545-300100010134212323788
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL-YLSYSLNPKTGKWRTVITVDE 114 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~-~i~~~~~~k~~~~~~~I~vd~ 114 (347)
-.+++||.|.||+|+-+.++-.+.........++..... ..-|... ......+.-.+. --+
T Consensus 23 ~~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~lSgg------~~~ 84 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAG------------CIVAAVSAELIFTRLQLSGG------EKE 84 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCC------------CCCHHHEEEEEECCCCCCCC------HHH
T ss_conf 899989987757999999999999863267752555427------------76402305766412000542------999
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 755443102221111210353220554240-----001456777663034341676504433
Q gi|254780217|r 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNR-----NAANALLKSLEEPPQKVLFILISHASP 171 (347)
Q Consensus 115 IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----~AaNALLK~LEEPp~~t~fiLit~~~~ 171 (347)
...+..-+... ..+...++++||.-.=+. ..+.++++.+.+ ++.+|++||.++
T Consensus 85 ~~~l~~~l~~~-~~~~~~lillDE~~~Gtd~~~~~~l~~~i~~~~~~---~~~~i~tTH~~e 142 (162)
T cd03227 85 LSALALILALA-SLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK---GAQVIVITHLPE 142 (162)
T ss_pred HHHHHHHHHHC-CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEECCHHH
T ss_conf 99999999854-24898489963655799988999999999999976---998999797399
No 306
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.86 E-value=0.061 Score=35.26 Aligned_cols=23 Identities=43% Similarity=0.447 Sum_probs=19.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 16631179898889999999999
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
..+-+.||.|+||+|+.+.++..
T Consensus 27 e~~~l~G~NGsGKSTLlk~i~Gl 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 59999999999999999999667
No 307
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.86 E-value=0.036 Score=37.12 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=28.1
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999999982889816631179898889999999999817
Q gi|254780217|r 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 22 ~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
..|.+....=+-.+-+++.|+||+||++++..+|..+..
T Consensus 18 ~~LD~~~~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~ 56 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLIT 56 (271)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 668887379999808999968998699999999999999
No 308
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.81 E-value=0.098 Score=33.64 Aligned_cols=145 Identities=15% Similarity=0.186 Sum_probs=67.8
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHC--C---CCCCEEEECCCCHHH--CCCCCCC
Q ss_conf 63117989888999999999981779988643121012678867999967--8---987545300100010--1342123
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS--H---ALHDFLYLSYSLNPK--TGKWRTV 109 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~--~---~hpd~~~i~~~~~~k--~~~~~~~ 109 (347)
+-+.||.|+||+|+++.++..+.-. ....+.......+......+.+.. | .+||..++.....+. -+-....
T Consensus 37 vaiiG~nGsGKSTL~~~l~Gll~P~-~~~~G~i~~~g~~i~~~~~~~lr~~vg~VfQ~P~~q~~~~tV~e~iafgl~n~~ 115 (283)
T PRK13640 37 TALIGHNGSGKSTISKLINGLLLPD-DNPKSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRG 115 (283)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCC-CCCEEEEEECCEECCCCCHHHHHHCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 9999999987999999996403788-886179999999999679889962618998688761887829999984575379
Q ss_pred CCHHHHHH----HHHHCCC------CCC--CCC--------------CHHHHHHHHH-HCCHHHHHHHHHHHHHCC--CC
Q ss_conf 23788755----4431022------211--112--------------1035322055-424000145677766303--43
Q gi|254780217|r 110 ITVDEIRR----IRYFLSL------TAN--TGY--------------WRVIMIDPVD-GMNRNAANALLKSLEEPP--QK 160 (347)
Q Consensus 110 I~vd~IR~----l~~~~~~------~~~--~~~--------------~Ki~IId~ad-~ln~~AaNALLK~LEEPp--~~ 160 (347)
++.+++++ +.+.+.+ .|+ .|| -+|+|+||.= .+...+...++..|++-. .+
T Consensus 116 ~~~~e~~~~v~~~l~~vgl~~~~~~~p~~LSGGqkQRvaiA~aLa~~P~iLllDEPTs~LD~~~~~~i~~~l~~l~~e~g 195 (283)
T PRK13640 116 VPRPEMIKIVADVLSDVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPQIIILDESTSMLDPAGKEQILKLIRKLMKDNN 195 (283)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999877997776479222999999999999999719999997687454898999999999999997069
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEE
Q ss_conf 416765044335730252036988
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSI 184 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i 184 (347)
+.+|++||+.+.. ..-.|...+
T Consensus 196 ~TvI~itHd~~~a--~~aDrv~vm 217 (283)
T PRK13640 196 LTIISITHDIDEA--AGADQVLVL 217 (283)
T ss_pred CEEEEEEECHHHH--HHCCEEEEE
T ss_conf 8999997887899--709989999
No 309
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.78 E-value=0.17 Score=31.69 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.5
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 31179898889999999999817799
Q gi|254780217|r 38 LFEGEQGIGKATLGFRYAGHVLQNPD 63 (347)
Q Consensus 38 Lf~Gp~GiGK~~~A~~~A~~llc~~~ 63 (347)
+++||+|+||+.+|+.+|..+=+..+
T Consensus 5 ~l~g~gG~GKS~lal~lAl~vA~G~~ 30 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLALAMALGKN 30 (239)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99808998889999999999975996
No 310
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=94.76 E-value=0.11 Score=33.30 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=18.3
Q ss_pred ECCCCCCCHHHHHHHHHHHHH
Q ss_conf 117989888999999999981
Q gi|254780217|r 39 FEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 39 f~Gp~GiGK~~~A~~~A~~ll 59 (347)
..||+|+||+|+...+.+++-
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~ 21 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILP 21 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHH
T ss_conf 989898988999999999999
No 311
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.76 E-value=0.04 Score=36.72 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=35.6
Q ss_pred CCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 21035322055-4240001456777663034341676504433573025203698864
Q gi|254780217|r 130 YWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 130 ~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
+.+|+|+||+- .|...+.+.+.+++..--++..+|+|||+.+ +++. |.++-+
T Consensus 174 ~~~iliLDEpts~LD~~te~~i~~~l~~~~~~~TvI~ItHrl~----~~~~-~D~Iiv 226 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVS----TILD-ADLVLV 226 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH----HHHH-CCEEEE
T ss_conf 9999999587667899999999999999749999999923898----9985-999999
No 312
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.75 E-value=0.044 Score=36.46 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 166311798988899999999998
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
--+|+.|.+|+||+|+|..+|..+
T Consensus 4 ~iiligG~sGvGKStla~~lA~rl 27 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799985799887899999999974
No 313
>pfam01591 6PF2K 6-phosphofructo-2-kinase. This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyses both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif.
Probab=94.74 E-value=0.088 Score=34.00 Aligned_cols=143 Identities=15% Similarity=0.195 Sum_probs=86.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHH
Q ss_conf 66311798988899999999998177998864312101267886799996789875453001000101342123237887
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~I 115 (347)
.+...|-|+-||+.+|..+.++|.-. +..|..... ...|+-..+...|..+++ +.++++.+.+..+..+-+
T Consensus 15 vIvmVGLPARGKS~ia~kl~RYL~W~----g~~~kvFn~----G~yRR~~~~~~~~~~ffd-p~n~~~~~~R~~~a~~~l 85 (223)
T pfam01591 15 MIVMVGLPARGKTYISKKLTRYLNWL----GVPTKVFNV----GEYRRSAVKAYSNYEFFR-PDNTEAMKIREQCALAAL 85 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----CCCEEEEEC----HHHHHHHCCCCCCCCCCC-CCCHHHHHHHHHHHHHHH
T ss_conf 99998999998899999999998656----998058426----378876318999941138-999899999999999999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEE-ECCCCCCCHHHHCEEEEE-ECCCCCHH
Q ss_conf 554431022211112103532205542400014567776630343416765-044335730252036988-64799989
Q gi|254780217|r 116 RRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILI-SHASPTILSTIRSRCLSI-KFNSLSEN 192 (347)
Q Consensus 116 R~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLi-t~~~~~il~TI~SRc~~i-~f~~l~~~ 192 (347)
.++..|+... +-.|.|. +|-.-|.+--..++....+.+-.++||=+ |+++.-|-.-|+..++.- .+...+.+
T Consensus 86 ~dl~~~l~~~----~G~VaI~-DATN~T~~RR~~i~~~~~~~~~~vlFiEsic~D~~ii~~NI~~~~~~spDY~~~~~e 159 (223)
T pfam01591 86 KDVLAYLNEE----SGQVAIF-DATNTTRERRKNILDFAEENGLKVFFLESICDDPEIIARNIKLVKFSSPDYKGKPPE 159 (223)
T ss_pred HHHHHHHHHC----CCEEEEE-ECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 9999999858----9829999-688768999999999998669749999997388899999999998459974688999
No 314
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.71 E-value=0.032 Score=37.52 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=20.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 1663117989888999999999981
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
.-..++||+|+||+++|+.+|....
T Consensus 20 ~ItEi~G~~gsGKT~l~lqla~~~q 44 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 3999999999989999999999985
No 315
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.71 E-value=0.046 Score=36.30 Aligned_cols=129 Identities=17% Similarity=0.169 Sum_probs=63.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHH
Q ss_conf 66311798988899999999998177998864312101267886799996789875453001000101342123237887
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEI 115 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~I 115 (347)
-+-+.||.|+||+|+...++..+-...+ .-..+...........+....-.-++...++....+. .....|--|-
T Consensus 30 ~~aivG~sGsGKSTLl~~l~G~~~p~~G--~i~i~g~~i~~~~~~~~~~i~~v~Q~~~lf~~ti~~n---lg~~LSgGqk 104 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQG--EITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNN---LGRRFSGGER 104 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCC--EEEECCEEHHHHHHHHHHHEEEECCCCCCCCCHHHHH---CCCCCCHHHH
T ss_conf 9999999987599999999861766788--6999999889978999972089835563645419986---2888899999
Q ss_pred HHHHHHCCC-CCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 554431022-2111121035322055-424000145677766303434167650443357
Q gi|254780217|r 116 RRIRYFLSL-TANTGYWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 (347)
Q Consensus 116 R~l~~~~~~-~~~~~~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~i 173 (347)
+. +.. +.....-+|+|+||+- .+...+...+++.|.+--++...|++||+.+.+
T Consensus 105 qR----v~iAral~~~p~ililDEpts~LD~~t~~~i~~~l~~~~~~~Tvi~itH~~~~l 160 (178)
T cd03247 105 QR----LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred HH----HHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 99----999999964979767228655699899999999999983999999980589899
No 316
>PRK03839 putative kinase; Provisional
Probab=94.70 E-value=0.03 Score=37.74 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 66311798988899999999998
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
-++++|.||+||+|+|..+|..+
T Consensus 2 ~I~ITGTPGtGKTTva~~La~~l 24 (180)
T PRK03839 2 IIAITGTPGVGKTTISKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89997899999899999999976
No 317
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.70 E-value=0.032 Score=37.51 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=24.9
Q ss_pred HHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 35322055-4240001456777663034341676504433
Q gi|254780217|r 133 VIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASP 171 (347)
Q Consensus 133 i~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~ 171 (347)
++|+||+- .+.......+.+.|.+--+++.+|+|||+..
T Consensus 138 iliLDEPTs~LD~~~~~~i~~~l~~l~~~~t~IiITH~~~ 177 (197)
T cd03278 138 FCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKG 177 (197)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 8997178553898999999999999856998999984999
No 318
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=94.68 E-value=0.051 Score=35.89 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=21.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 1663117989888999999999981
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
-++|+=|.||+||.|+-+..+..|=
T Consensus 104 sliLiGG~PG~GKSTLLLqV~~~LA 128 (481)
T TIGR00416 104 SLILIGGDPGIGKSTLLLQVACQLA 128 (481)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 1698468899635678999999984
No 319
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=94.68 E-value=0.22 Score=30.80 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9999999982889816631179898889999999999817
Q gi|254780217|r 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 21 ~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
.+.+..++..+.+ .++.|.-|+||+|- +-++++.
T Consensus 79 r~~i~~~i~~nqV---vii~GeTGsGKTTQ---iPq~~le 112 (1295)
T PRK11131 79 KQDILEAIRDHQV---VIVAGETGSGKTTQ---LPKICLE 112 (1295)
T ss_pred HHHHHHHHHHCCE---EEEECCCCCCHHHH---HHHHHHH
T ss_conf 9999999997996---99976899987889---9999996
No 320
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=94.67 E-value=0.21 Score=30.99 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=29.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 999999999828898166311798988899999999998177
Q gi|254780217|r 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 20 ~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
+...|...+....-.|-+=++||||+||.|+.-+|++.+...
T Consensus 35 ~~~ll~~l~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~~~ 76 (325)
T PRK09435 35 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 76 (325)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 999999863017982599742799986889999999999967
No 321
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=94.66 E-value=0.031 Score=37.65 Aligned_cols=139 Identities=19% Similarity=0.297 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf 09299999999999828898166311798988899999999998177998864312101267886799996789875453
Q gi|254780217|r 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 (347)
Q Consensus 15 ~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~ 94 (347)
.--.+..+.|..|+..++ .+++.|-.|+||||+..++...+-
T Consensus 142 ~~~g~~~~Fl~~Ai~~~k---nIii~GGTgSGKTTf~kal~~~IP----------------------------------- 183 (328)
T TIGR02788 142 LDAGDIKEFLRLAIASRK---NIIISGGTGSGKTTFLKALVKEIP----------------------------------- 183 (328)
T ss_pred HHCCCHHHHHHHHHHCCC---EEEEEECCCCHHHHHHHHHHHCCC-----------------------------------
T ss_conf 862888799999987389---199990689718999999973276-----------------------------------
Q ss_pred ECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---HCCHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 0010001013421232378875544310222111121035322055---4240001456777663034341676504433
Q gi|254780217|r 95 LSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVD---GMNRNAANALLKSLEEPPQKVLFILISHASP 171 (347)
Q Consensus 95 i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad---~ln~~AaNALLK~LEEPp~~t~fiLit~~~~ 171 (347)
+..+.|+|||++|+. +..+ +.+|=++..=+ -...=..-.||+.
T Consensus 184 ----------~~ER~iTIED~~E~~--~~hh----pN~V~L~ysk~v~~g~~~vt~~~Ll~s------------------ 229 (328)
T TIGR02788 184 ----------KDERLITIEDTRELF--LPHH----PNKVHLFYSKGVGQGSAKVTPKDLLES------------------ 229 (328)
T ss_pred ----------CCCCEEEEEEEECCC--CCCC----CCEEEEEECCCCCCCCCCCCHHHHHHH------------------
T ss_conf ----------225278885201147--8889----864565534642344356898999999------------------
Q ss_pred CCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 5730252036988647999899999999727888967899999975989789998814577999999999840
Q gi|254780217|r 172 TILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIH 244 (347)
Q Consensus 172 ~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~ 244 (347)
++|++| |-+ +|.+.. ..++..++-..+-|+||-.-..-.++....++++..+..
T Consensus 230 -----------cLRMrP---DRI--~LgELR---G~Eaf~F~~~~nsGHpGsiTT~HA~s~~~Af~qla~l~k 283 (328)
T TIGR02788 230 -----------CLRMRP---DRI--LLGELR---GDEAFDFIRAVNSGHPGSITTVHAGSPEEAFEQLALLVK 283 (328)
T ss_pred -----------HHCCCC---CHH--HHHHHC---CHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf -----------711774---057--674303---325788887520598860567871898999999999872
No 322
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.61 E-value=0.094 Score=33.77 Aligned_cols=118 Identities=15% Similarity=0.105 Sum_probs=61.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCC-EE-EECCCCHHHCCCCCCCCC
Q ss_conf 8166311798988899999999998177998864312101267886799996789875-45-300100010134212323
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD-FL-YLSYSLNPKTGKWRTVIT 111 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd-~~-~i~~~~~~k~~~~~~~I~ 111 (347)
+..++++||.+.||+++-+.++-.++-..-....||..... .++ ++ .+....+-..+...-..-
T Consensus 25 ~~~~iiTGpN~~GKSt~Lk~i~l~~ilaq~G~~vpa~~~~~--------------~~~~i~t~i~~~d~~~~~~S~F~~E 90 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFEL--------------PPVKIFTSIRVSDDLRDGISYFYAE 90 (199)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEHHHEEE--------------CCCEEEEEEECCCHHHCCCCHHHHH
T ss_conf 85899989999865999999999999999689386244782--------------3308999983475122453579999
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 788755443102221111210353220554240-----001456777663034341676504433
Q gi|254780217|r 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-----NAANALLKSLEEPPQKVLFILISHASP 171 (347)
Q Consensus 112 vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----~AaNALLK~LEEPp~~t~fiLit~~~~ 171 (347)
+.+++.+.+.+. .+..-.+++||.-+=|. +.+-|+|+.|-+ .++.++++||...
T Consensus 91 ~~~~~~il~~~~----~~~~sLvliDEl~~GT~~~eg~a~a~a~le~l~~--~~~~~iitTH~~~ 149 (199)
T cd03283 91 LRRLKEIVEKAK----KGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN--KNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHC----CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEECCCHH
T ss_conf 999999999724----8985799614324799867899999999999986--7987999887289
No 323
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.57 E-value=0.1 Score=33.56 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=18.6
Q ss_pred EEEECCCCCCCHHHHHHHHHHH
Q ss_conf 6631179898889999999999
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
-+-+.||.|+||+|+.+.++..
T Consensus 29 ~~~l~G~NGaGKSTLl~~l~Gl 50 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998599999999768
No 324
>PRK04328 hypothetical protein; Provisional
Probab=94.57 E-value=0.038 Score=36.96 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=25.8
Q ss_pred HHHHHHCCC-CCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999998288-981663117989888999999999981
Q gi|254780217|r 24 LSQYYCSGR-MHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 24 L~~~~~~~~-l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
|...+..|= -.+.+|+.||||+||+++|..|+..=+
T Consensus 13 LD~lL~GGlp~gs~~Lv~G~pGtGKT~la~qFl~~g~ 49 (250)
T PRK04328 13 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL 49 (250)
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 7875159987996999982899998999999999998
No 325
>PRK05748 replicative DNA helicase; Provisional
Probab=94.55 E-value=0.029 Score=37.89 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=28.0
Q ss_pred HCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 1092999999999998288981663117989888999999999981
Q gi|254780217|r 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 14 i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
+.|-..-+..|...+..=+-..-+++-|.||.||+++|+.+|..+.
T Consensus 183 ~~Gi~TG~~~LD~~~~G~~~g~LiviaaRP~mGKTa~alnia~~~a 228 (448)
T PRK05748 183 ITGIPTGFRDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVA 228 (448)
T ss_pred CCEEECCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 7610578278999827988673799984799876899999999999
No 326
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.54 E-value=0.14 Score=32.30 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=41.2
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 655558756561092999999999998288981663117989888999999999981
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
.....+..++++--.+...+.|.+...... --+||+||.|.||+|+..++.+.+.
T Consensus 51 ~~~~~~~~L~~LG~~~~~~~~l~~~~~~~~--GlilitGptGSGKtTtl~a~l~~~~ 105 (264)
T cd01129 51 DKKNQILDLEKLGLKPENLEIFRKLLEKPH--GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCCCCCCHHHHCCCHHHHHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 776665798795799999999999970899--8899978999977999999998643
No 327
>KOG3347 consensus
Probab=94.52 E-value=0.033 Score=37.47 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=23.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 8898166311798988899999999998
Q gi|254780217|r 31 GRMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 31 ~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
...|+ +|++|.||+||+|+|.++|...
T Consensus 5 r~~PN-ILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347 5 RERPN-ILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred HCCCC-EEEECCCCCCCHHHHHHHHHHH
T ss_conf 13788-7986799988025999999973
No 328
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.50 E-value=0.28 Score=29.98 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.1
Q ss_pred EEECCCCCCCHHHHHHHHHHH
Q ss_conf 631179898889999999999
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
+++.||+|+||.++...+.+.
T Consensus 5 iil~Gpsg~GK~tl~~~l~~~ 25 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999863
No 329
>PRK07004 replicative DNA helicase; Provisional
Probab=94.47 E-value=0.052 Score=35.84 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=16.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 166311798988899999999998
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+-+++-|.||.|||+||+.+|..+
T Consensus 214 dLiIIAARPsmGKTafAlniA~n~ 237 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYV 237 (460)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 579997368764269999999999
No 330
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.45 E-value=0.099 Score=33.58 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=64.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH-CCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 1663117989888999999999981779988643121-012678867999967898754530010001013421232378
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM-CNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~-~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
..++++||...||+|+.+.++...+-.......||.. +.... + |-++.... ++..-....+--..
T Consensus 29 ~~~iiTGpN~sGKSt~lk~i~l~~iLAq~G~~vpa~~~~~~~~----~---------d~i~~~i~-~~d~~~~~~S~F~~ 94 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPV----F---------ENIFADIG-DEQSIEQSLSTFSS 94 (200)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEECCC----C---------CEEEEEEC-CCCCHHHHHHHHHH
T ss_conf 3999988987750999999999999999777800110047266----5---------67888846-73366677879999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCEEEEEEC
Q ss_conf 8755443102221111210353220554240-----001456777663034341676504433-573025203698864
Q gi|254780217|r 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-----NAANALLKSLEEPPQKVLFILISHASP-TILSTIRSRCLSIKF 186 (347)
Q Consensus 114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----~AaNALLK~LEEPp~~t~fiLit~~~~-~il~TI~SRc~~i~f 186 (347)
|++++..-+... .....++|||.-+=|. ..+-|+++.|-+ .++.+|++||..+ ..+..-..+.+...+
T Consensus 95 E~~~~~~il~~~---~~~sLvliDE~~~gTn~~eg~~~a~a~l~~l~~--~~~~~i~tTH~~eL~~l~~~~~~v~~~~~ 168 (200)
T cd03280 95 HMKNIARILQHA---DPDSLVLLDELGSGTDPVEGAALAIAILEELLE--RGALVIATTHYGELKAYAYKREGVENASM 168 (200)
T ss_pred HHHHHHHHHHHC---CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHHHHCCCEEEEEE
T ss_conf 999999999858---888879755666898878999999999999985--79979998971789987751356278899
No 331
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.43 E-value=0.0071 Score=42.78 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=66.2
Q ss_pred EEEECCCCCCCHHHHHHHHHH-HHHCCCCCCCCCHHHCCCCCCCHH-HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 663117989888999999999-981779988643121012678867-999967898754530010001013421232378
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAG-HVLQNPDFSKAPVRMCNPDPCSPF-VKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~-~llc~~~~~~~~~~~~~~~~~~~~-~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
-+.|.||.|+||||+.-.+|. +.+-+... ..+.-+.|.+.-. .-++.. .-+++-+. ..-.-+-+
T Consensus 178 V~alVGPTGVGKTTTiAKLAAr~~l~~g~~---kVaLIT~DTYRIgAvEQLkt--Ya~IlgvP---------v~vv~~~~ 243 (404)
T PRK06995 178 VFALVGPTGVGKTTTTAKLAARCVMRHGAS---KVALLTTDSYRIGGHEQLRI--YGKILGVP---------VHAVKDAA 243 (404)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCC---CEEEEECCCCCHHHHHHHHH--HHHHCCCE---------EEEECCHH
T ss_conf 589866888763758999999999983898---37999768754789999999--99875955---------99959999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHH-HHHHHHHHHHH--CCCCCCEEEEECCCCCCCHHHHCEEEEEECC
Q ss_conf 87554431022211112103532205542400-01456777663--0343416765044335730252036988647
Q gi|254780217|r 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN-AANALLKSLEE--PPQKVLFILISHASPTILSTIRSRCLSIKFN 187 (347)
Q Consensus 114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~-AaNALLK~LEE--Pp~~t~fiLit~~~~~il~TI~SRc~~i~f~ 187 (347)
+.+..... ..++.+|+||-|-+=-.+ ...-.++.|.+ +|-.++..|.++....-+.-|..|...+.+.
T Consensus 244 eL~~aL~~------l~~~dlILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~ 314 (404)
T PRK06995 244 DLRLALAE------LRNKHIVLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLA 314 (404)
T ss_pred HHHHHHHH------HCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99999997------089999998099989768889999999973578852899977989999999999984469998
No 332
>PRK07263 consensus
Probab=94.43 E-value=0.052 Score=35.83 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=28.6
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 6109299999999999828898166311798988899999999998
Q gi|254780217|r 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 13 ~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
++.|-..-+..|.+....=+-..-+++-|.||.||+++|+.+|..+
T Consensus 182 ~~~Gi~TGf~~LD~~t~Gl~~GdLiviaaRPsmGKTa~alnia~~i 227 (453)
T PRK07263 182 DVTGLPTGFRDLDKITTGLHPDQLIILAARPAVGKTAFVLNIAQNV 227 (453)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9776758858799773289978689997278884789999999999
No 333
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.43 E-value=0.095 Score=33.75 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECC
Q ss_conf 99999999999828898166311798988899999999998177998864312101267886799996789875453001
Q gi|254780217|r 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 (347)
Q Consensus 18 ~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~ 97 (347)
+...+.|..+.+.++ .+|++||.|.||+|+..+++.++--. ..- ... .++ ..+ ...||+...+..
T Consensus 12 ~~~~~~L~~~v~~~~---nIlIsG~tGSGKTTll~al~~~i~~~---~ri----vti--Ed~--~El-~l~~~~~v~l~~ 76 (186)
T cd01130 12 PLQAAYLWLAVEARK---NILISGGTGSGKTTLLNALLAFIPPD---ERI----ITI--EDT--AEL-QLPHPNWVRLVT 76 (186)
T ss_pred HHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHHCCCC---CCE----EEE--CCC--HHH-CCCCCCEEEEEE
T ss_conf 999999999998599---89998999998999999999613345---645----984--153--540-477775688886
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
Q ss_conf 00010134212323788755443102221111210353220554240001456777663034341676504433573025
Q gi|254780217|r 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTI 177 (347)
Q Consensus 98 ~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI 177 (347)
.... ......++..+. +...+.+.| ..+++-|+-. .+|. ++++.+.-=. .-.++|-+.+....++
T Consensus 77 ~~~~--~~~~~~~~~~~l--i~~aLR~~p-----d~iivGEiR~--~Ea~-~~l~a~~tGh---~g~ltTiHa~s~~~ai 141 (186)
T cd01130 77 RPGN--VEGSGEVTMADL--LRSALRMRP-----DRIIVGEVRG--GEAL-DLLQAMNTGH---PGGMTTIHANSAEEAL 141 (186)
T ss_pred ECCC--CCCCCEECHHHH--HHHHCCCCC-----CEEECCCCCC--HHHH-HHHHHHHCCC---CCCCCCCCCCCHHHHH
T ss_conf 0464--578650349999--887366899-----7373175683--9999-9999997489---8603031589999999
Q ss_pred HCEE-EEEECCCCCHHHHHHHH
Q ss_conf 2036-98864799989999999
Q gi|254780217|r 178 RSRC-LSIKFNSLSENNLYKAL 198 (347)
Q Consensus 178 ~SRc-~~i~f~~l~~~~~~~~L 198 (347)
. |. +.....+.+.+.+.+.+
T Consensus 142 ~-Rl~~l~~~~~~~~~~~~~~i 162 (186)
T cd01130 142 T-RLELLPSNVPLGRPLLREQI 162 (186)
T ss_pred H-HHHHHHHCCCCCHHHHHHHH
T ss_conf 9-99988754799999999999
No 334
>PRK12338 hypothetical protein; Provisional
Probab=94.41 E-value=0.069 Score=34.85 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 8981663117989888999999999981
Q gi|254780217|r 32 RMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 32 ~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
|-|-.+|+.|..|+||+|+|..+|..|-
T Consensus 2 r~PliILiGGtSGvGKSTlAseLAsRLg 29 (320)
T PRK12338 2 RKPYVILIGSASGIGKSTIASEVARRLN 29 (320)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767999706888768889999998519
No 335
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.41 E-value=0.1 Score=33.46 Aligned_cols=134 Identities=14% Similarity=0.117 Sum_probs=66.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
+.-++++||...||+++-+.++-..+-.......|+..+.. .-.|-++......+... .+.+--..
T Consensus 29 ~~~~iITGpN~gGKSt~Lktigl~~ilAq~G~~vpA~~a~~-------------~~~d~I~t~i~~~d~i~-~~~StF~~ 94 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATL-------------PIFNRLLSRLSNDDSME-RNLSTFAS 94 (204)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEHHHCCC-------------CCCCEEEEEECCCCCCC-CCCCHHHH
T ss_conf 25999989998871999999999999999689167132103-------------36677899987666100-66458999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCCCCEEEEECCCCCCCH--HHHCEEEEEEC
Q ss_conf 8755443102221111210353220554240-----0014567776630343416765044335730--25203698864
Q gi|254780217|r 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-----NAANALLKSLEEPPQKVLFILISHASPTILS--TIRSRCLSIKF 186 (347)
Q Consensus 114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----~AaNALLK~LEEPp~~t~fiLit~~~~~il~--TI~SRc~~i~f 186 (347)
|++++..-+... ++.-.+++||.-+=|. ..+-|+|+.|-+- ++..+++||.. .+-. .-...+...+|
T Consensus 95 E~~~~~~il~~~---~~~sLvliDEl~~GT~~~eg~a~a~aile~l~~~--~~~~i~tTH~~-~L~~l~~~~~~v~n~~m 168 (204)
T cd03282 95 EMSETAYILDYA---DGDSLVLIDELGRGTSSADGFAISLAILECLIKK--ESTVFFATHFR-DIAAILGNKSCVVHLHM 168 (204)
T ss_pred HHHHHHHHHHHC---CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC--CCEEEEECCHH-HHHHHHHHCCCEEEEEE
T ss_conf 999999999858---8898798543348998678999999999999967--98799989768-99998863888499999
Q ss_pred C
Q ss_conf 7
Q gi|254780217|r 187 N 187 (347)
Q Consensus 187 ~ 187 (347)
.
T Consensus 169 ~ 169 (204)
T cd03282 169 K 169 (204)
T ss_pred E
T ss_conf 9
No 336
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.36 E-value=0.028 Score=38.05 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.8
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 63117989888999999999981
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
-|++||||+||+++|..|+..-.
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a 24 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 15876899999999999999998
No 337
>PRK13542 consensus
Probab=94.31 E-value=0.094 Score=33.78 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=18.9
Q ss_pred EEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 66311798988899999999998
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
-+-+.||.|.||+|+.+.++..+
T Consensus 46 i~~liGpNGaGKTTLlk~l~Gll 68 (224)
T PRK13542 46 LLQVMGPNGSGKTSLLRVLSGLM 68 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999995797
No 338
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=94.30 E-value=0.36 Score=29.10 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCH----HHHHHHC--CCCCCE
Q ss_conf 9999999999828898166311798988899999999998177998864312101267886----7999967--898754
Q gi|254780217|r 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSP----FVKQMAS--HALHDF 92 (347)
Q Consensus 19 ~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~----~~~~i~~--~~hpd~ 92 (347)
.+...|..++..+. ..++.||+|+||+|.. -.+++......+. -.|. .+..- ...+++. |....-
T Consensus 8 ~~~~~i~~~l~~~~---~~vl~a~tGsGKtTqv---P~~ll~~~~~~g~--I~~~-qPRR~AA~s~A~RvA~e~~e~~G~ 78 (812)
T PRK11664 8 AVLPELLTALKTAP---QVLLKAPTGAGKSTWL---PLQLLQQGGINGK--IIML-EPRRLAARNVAQRLAEQLGEKPGE 78 (812)
T ss_pred HHHHHHHHHHHHCC---EEEEEECCCCCHHHHH---HHHHHHCCCCCCC--EEEE-CCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999999799---7999908999989999---9999964688993--8993-883999999999999972999998
Q ss_pred EEECCC--CHHHCCCCCCCCCH--HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH--HHHHHHH-HHHCCCCCCEEE
Q ss_conf 530010--00101342123237--8875544310222111121035322055424000--1456777-663034341676
Q gi|254780217|r 93 LYLSYS--LNPKTGKWRTVITV--DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA--ANALLKS-LEEPPQKVLFIL 165 (347)
Q Consensus 93 ~~i~~~--~~~k~~~~~~~I~v--d~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A--aNALLK~-LEEPp~~t~fiL 165 (347)
.|.+. .+.+. ...+.|.+ |-| +...+..-|...++-+|||||+|.=+.++ .=+||+- ...-.++-.+|+
T Consensus 79 -~VGY~vR~e~~~-s~~Tri~~~T~Gi--Llr~l~~dp~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~r~dLklvv 154 (812)
T PRK11664 79 -TVGYRMRAESKV-GPNTRLEVVTEGI--LTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred -EEEEEECCCCCC-CCCCEEEEECHHH--HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf -675782567788-9985799975589--999972497767788899957546875189999999999986189828999
Q ss_pred E
Q ss_conf 5
Q gi|254780217|r 166 I 166 (347)
Q Consensus 166 i 166 (347)
.
T Consensus 155 M 155 (812)
T PRK11664 155 M 155 (812)
T ss_pred E
T ss_conf 8
No 339
>PRK08506 replicative DNA helicase; Provisional
Probab=94.30 E-value=0.064 Score=35.12 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 92999999999998288981663117989888999999999981
Q gi|254780217|r 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 16 G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
|=..-+..|.+....=+-..=+++-|.||.|||+||+.+|....
T Consensus 175 Gi~TGf~~LD~~t~Gl~~gdLiIIAARPsmGKTAfAlniA~~~a 218 (473)
T PRK08506 175 GLDTGFKQLNKMTKGFNKGDLIIIAARPSMGKTTLVLNMVLKAL 218 (473)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 47788087888726998562799950799867899999999999
No 340
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=94.25 E-value=0.14 Score=32.39 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=41.3
Q ss_pred HHHHHHHHHCC-HHHHH----HHHHHHHHCC-CCCCEEEEECCCCCCCHHHHCEE-EEEECCCCC
Q ss_conf 35322055424-00014----5677766303-43416765044335730252036-988647999
Q gi|254780217|r 133 VIMIDPVDGMN-RNAAN----ALLKSLEEPP-QKVLFILISHASPTILSTIRSRC-LSIKFNSLS 190 (347)
Q Consensus 133 i~IId~ad~ln-~~AaN----ALLK~LEEPp-~~t~fiLit~~~~~il~TI~SRc-~~i~f~~l~ 190 (347)
++|||||+..= ..+.+ ..+.-|++-- .+-=|+|+|.++..|-..||.+| ..+++.++.
T Consensus 73 liViDE~~~~~~~r~~~~~~~~~i~~l~~HRH~G~DiiliTQ~~~~id~~ir~lve~~~~~~r~~ 137 (183)
T pfam05707 73 LLVIDEAQTWFPSRRGGDKVPPVLDAFSTHRHLGWDIILITQNPSKIDKQIRALVEHHVHCRRLT 137 (183)
T ss_pred EEEEECCHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCEEEEEEECC
T ss_conf 99998976554887778888389999998077882089991897997299998614899999533
No 341
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.24 E-value=0.13 Score=32.76 Aligned_cols=121 Identities=13% Similarity=0.070 Sum_probs=60.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
+..++++||...||+++.+.++-.++-.......||..+...+.+... ..+... |.-.+ ..+--..
T Consensus 29 ~~~~iiTGpN~gGKSt~lkti~l~~ilaq~G~~vpa~~~~~~~~~~i~-----------~~i~~~-d~~~~--~~StF~~ 94 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIF-----------TRMSSR-ESVSS--GQSAFMI 94 (213)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCEE-----------EEECCH-HHHHC--CCCHHHH
T ss_conf 259999899987659999999999999985885767403997212237-----------676764-34441--3258999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCCC-CEEEEECCCC
Q ss_conf 8755443102221111210353220554240-----00145677766303434-1676504433
Q gi|254780217|r 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-----NAANALLKSLEEPPQKV-LFILISHASP 171 (347)
Q Consensus 114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----~AaNALLK~LEEPp~~t-~fiLit~~~~ 171 (347)
|++++..-+... ++.-.+++||.=+=|. +.+-|+++.|-+-...+ +++++||..+
T Consensus 95 E~~~~~~il~~~---~~~sLvliDEl~~GT~~~eg~ala~a~le~l~~~~~~~~~~~~tTH~~~ 155 (213)
T cd03281 95 DLYQVSKALRLA---TRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHC---CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf 999999999858---8886587731347888356799999999999965887664999897278
No 342
>PRK08840 replicative DNA helicase; Provisional
Probab=94.21 E-value=0.06 Score=35.34 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 898166311798988899999999998
Q gi|254780217|r 32 RMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 32 ~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+-.+-+++-|.||.||+++|+.+|...
T Consensus 215 ~~G~LiviaaRPsmGKTalalnia~n~ 241 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTFAMNLCENA 241 (464)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 757679998379873689999999999
No 343
>KOG1051 consensus
Probab=94.20 E-value=0.21 Score=31.03 Aligned_cols=161 Identities=15% Similarity=0.151 Sum_probs=87.3
Q ss_pred HHHHCCH--HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCC
Q ss_conf 6561092--99999999999828898166311798988899999999998177998864312101267886799996789
Q gi|254780217|r 11 NQRLFGH--EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 (347)
Q Consensus 11 ~~~i~G~--~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (347)
.+.++|. +++.+.........+ +..++.|.+|+||+..+.-+|+.+--..-+......
T Consensus 185 ~dPvigr~deeirRvi~iL~Rr~k--~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~------------------ 244 (898)
T KOG1051 185 LDPVIGRHDEEIRRVIEILSRKTK--NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDK------------------ 244 (898)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCC--CCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC------------------
T ss_conf 788658852889999999814678--996698368777216899999876617888533455------------------
Q ss_pred CCCEEEECCCCHHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHH-------HHHHHHHHCCCC
Q ss_conf 8754530010001013421232378-87554431022211112103532205542400014-------567776630343
Q gi|254780217|r 89 LHDFLYLSYSLNPKTGKWRTVITVD-EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN-------ALLKSLEEPPQK 160 (347)
Q Consensus 89 hpd~~~i~~~~~~k~~~~~~~I~vd-~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaN-------ALLK~LEEPp~~ 160 (347)
.++.++....-.+-+.+.. +| .++.+.+.+.. .|+.=|..|++.|-+..+..| .+||.+.--..
T Consensus 245 --~l~~l~~g~l~aGa~~rge--~E~rlk~l~k~v~~---~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~- 316 (898)
T KOG1051 245 --KLIALDFGSLVAGAKRRGE--FEERLKELLKEVES---GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGG- 316 (898)
T ss_pred --CEEEEEHHHCCCCCCCCHH--HHHHHHHHHHHHHC---CCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCC-
T ss_conf --2489870000358642127--88999999999854---798689983214322048874118999986588885597-
Q ss_pred CCEEEEECCCC-----CCCHHHHCEEEEEECCCCCHHHHHHHHH
Q ss_conf 41676504433-----5730252036988647999899999999
Q gi|254780217|r 161 VLFILISHASP-----TILSTIRSRCLSIKFNSLSENNLYKALE 199 (347)
Q Consensus 161 t~fiLit~~~~-----~il~TI~SRc~~i~f~~l~~~~~~~~L~ 199 (347)
.-||=.|++-. .--|++-.|-|.+.++-++.++...+|.
T Consensus 317 l~~IGatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~ 360 (898)
T KOG1051 317 LWCIGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILP 360 (898)
T ss_pred EEEEECCCHHHHHHHHHHCCCHHHCCCEEEECCCCCCCHHHHHH
T ss_conf 48972250999999876382054185516713576553145655
No 344
>pfam00488 MutS_V MutS domain V. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters.
Probab=94.20 E-value=0.12 Score=32.89 Aligned_cols=120 Identities=16% Similarity=0.062 Sum_probs=57.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
++.++++||...||+++.+.++-.++-..-....||..+...+. |-++......+. -....+-=.-
T Consensus 42 ~~~~iiTGpN~sGKSt~Lk~igl~~~lAq~G~~VPA~~a~~~~~-------------d~I~~~i~~~ds-l~~~~StF~~ 107 (234)
T pfam00488 42 SRILLITGPNMGGKSTYLRQVALIVIMAQIGSFVPAESARIGIV-------------DRIFTRIGASDD-LASGRSTFMV 107 (234)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEECC-------------CEEEEEECCCCH-HHCCCCHHHH
T ss_conf 16999978877761999999999999998368742220599636-------------559998567533-4466117999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 8755443102221111210353220554240-----001456777663034341676504433
Q gi|254780217|r 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-----NAANALLKSLEEPPQKVLFILISHASP 171 (347)
Q Consensus 114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----~AaNALLK~LEEPp~~t~fiLit~~~~ 171 (347)
|++++..-+... ++.-.++|||.-+=|. +.+-|+|.-|-+- .++..+++||..+
T Consensus 108 e~~~~~~il~~~---~~~sLvliDEl~~GT~~~eg~al~~aile~L~~~-~~~~~i~tTH~~~ 166 (234)
T pfam00488 108 EMLETANILHNA---TDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEK-IRARTLFATHYHE 166 (234)
T ss_pred HHHHHHHHHHHC---CCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCEEEEEECHHH
T ss_conf 999999999738---8773220142458998346799999999999973-5977999713577
No 345
>PRK05595 replicative DNA helicase; Provisional
Probab=94.17 E-value=0.068 Score=34.92 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 9299999999999828898166311798988899999999998
Q gi|254780217|r 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 16 G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
|-..-+..|.+....=+-..-+++-|.||.||+++|+.+|...
T Consensus 183 Gi~TGf~~LD~~t~Gl~~GdLiiiaaRP~mGKTa~alnia~~~ 225 (444)
T PRK05595 183 GVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYA 225 (444)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7658847699874599857779998579898079999999999
No 346
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=94.17 E-value=0.11 Score=33.20 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=30.7
Q ss_pred CCHHHHCCHHH----HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 75656109299----9999999998288981663117989888999999999981
Q gi|254780217|r 9 VYNQRLFGHED----IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 9 ~~~~~i~G~~~----~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
-+.++++-... ....|..+...+. .+|++||.|+||+|+..++..++.
T Consensus 113 ~tl~~L~~~g~~~~~~~~~L~~~v~~~~---~ilIsG~TGSGKTT~l~all~~i~ 164 (283)
T pfam00437 113 LTLDDLGMTGAFDADIAEFLRQAVQARG---NILVSGGTGSGKTTLLYALLNEIN 164 (283)
T ss_pred CCHHHHCCCCCCHHHHHHHHHHHHHCCC---EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9999973897785999999999998197---599988999988999999998408
No 347
>PRK08082 consensus
Probab=94.16 E-value=0.059 Score=35.39 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=28.2
Q ss_pred HCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 109299999999999828898166311798988899999999998
Q gi|254780217|r 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 14 i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+.|-..-+..|.+....=+-..-+++-|.||.||+++|+.+|..+
T Consensus 183 ~~Gi~TGf~~LD~lt~G~~~g~LiviaaRPsmGKTa~alnia~~~ 227 (453)
T PRK08082 183 ITGIPTGFTELDRMTAGFQRNDLIIVAARPSVGKTAFALNIAQNV 227 (453)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 775548848888641477758579998678875789999999999
No 348
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.12 E-value=0.064 Score=35.12 Aligned_cols=53 Identities=8% Similarity=0.158 Sum_probs=29.9
Q ss_pred CHHHHHHHHH-HCCHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHCEEEEEECCC
Q ss_conf 1035322055-4240001456777663-03434167650443357302520369886479
Q gi|254780217|r 131 WRVIMIDPVD-GMNRNAANALLKSLEE-PPQKVLFILISHASPTILSTIRSRCLSIKFNS 188 (347)
Q Consensus 131 ~Ki~IId~ad-~ln~~AaNALLK~LEE-Pp~~t~fiLit~~~~~il~TI~SRc~~i~f~~ 188 (347)
-+|+|+||.- .|...+.-.+..++.+ -.+++.+|++||+|..+.-. ..+++-|
T Consensus 145 p~vllLDEPtsgLD~~~~~~v~~~i~~~~~~g~tiIi~tH~p~~~~~~-----~~~~~~~ 199 (206)
T PRK13539 145 RPIWLLDEPTAALDSASQALFAELIRAHLAQGGIVIAATHIPLGLPGA-----RELDLGP 199 (206)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-----CEECCCC
T ss_conf 898999799777899999999999999995899999993898878889-----8980566
No 349
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.11 E-value=0.12 Score=32.95 Aligned_cols=119 Identities=16% Similarity=0.091 Sum_probs=60.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHH
Q ss_conf 16631179898889999999999817799886431210126788679999678987545300100010134212323788
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~ 114 (347)
..++++||...||+++-+.++-.++-.......||..+...+. |-++......+.- ....+-=..|
T Consensus 31 ~~~iiTGpN~sGKSt~Lk~igl~~ilaq~G~~vpA~~a~i~~~-------------d~I~t~i~~~d~i-~~~~StF~~e 96 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVV-------------DRIFTRIGASDDL-AGGRSTFMVE 96 (216)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEECCEEEEEC-------------CEEEEEECCCCHH-HCCCCHHHHH
T ss_conf 5999989987745999999999999998687587661599704-------------4699950686213-3372658999
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 755443102221111210353220554240-----001456777663034341676504433
Q gi|254780217|r 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNR-----NAANALLKSLEEPPQKVLFILISHASP 171 (347)
Q Consensus 115 IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----~AaNALLK~LEEPp~~t~fiLit~~~~ 171 (347)
++++..-+... ...-.+++||.-+=|. ..+.|+|+-|-+- .++.++++||..+
T Consensus 97 ~~~~~~il~~a---~~~sLvliDEl~~gT~~~eg~ala~aile~L~~~-~~~~~i~tTH~~~ 154 (216)
T cd03284 97 MVETANILNNA---TERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHE 154 (216)
T ss_pred HHHHHHHHHHC---CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECHHH
T ss_conf 99999999848---7761563344568998578899999999999970-7972897505088
No 350
>PRK08118 topology modulation protein; Reviewed
Probab=94.10 E-value=0.05 Score=35.98 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 63117989888999999999981
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
+++.|++|+||+|+|+.+++.+-
T Consensus 4 I~IiG~~GsGKSTlAr~L~~~~~ 26 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999879999999999889
No 351
>PRK06321 replicative DNA helicase; Provisional
Probab=94.09 E-value=0.11 Score=33.38 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=25.9
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999998288981663117989888999999999981
Q gi|254780217|r 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 21 ~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
...|.+....=+-.+-+++-|.||.|||++|+.+|..+-
T Consensus 213 f~~LD~lt~Gl~~GdliviaaRPsmGKTalalnia~~~a 251 (472)
T PRK06321 213 FIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFC 251 (472)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 488999855988675799853899977999999999999
No 352
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=94.08 E-value=0.097 Score=33.64 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=30.7
Q ss_pred HHHHHH-HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 999999-99999828898166311798988899999999998
Q gi|254780217|r 18 EDIEKF-LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 18 ~~~~~~-L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+.+.+. |-+-+.+-+-|--+|+-|++|+||+|.|..+|+.|
T Consensus 72 e~a~rY~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rL 113 (299)
T COG2074 72 EVAKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRL 113 (299)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999999999998615787599961788777257999999972
No 353
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=94.03 E-value=0.04 Score=36.72 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=48.8
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHH
Q ss_conf 11798988899999999998177998864312101267886799996789875453001000101342123237887554
Q gi|254780217|r 39 FEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 (347)
Q Consensus 39 f~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l 118 (347)
||||||+|||++++..|..=. ..|- .+.+|+ ..+| .|+|=+|++
T Consensus 17 iYGp~G~GKTn~c~~~a~~a~-------------------------~~Gk--~v~YiD----TEGG-----LS~ER~~q~ 60 (223)
T TIGR02237 17 IYGPPGSGKTNICLILAVNAA-------------------------RQGK--KVVYID----TEGG-----LSPERFKQI 60 (223)
T ss_pred EECCCCCCHHHHHHHHHHHHH-------------------------HCCC--CEEEEE----CCCC-----CHHHHHHHH
T ss_conf 875899867899999999998-------------------------6189--589996----2898-----328999998
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHCCHHH--HHHHHHHHHHC
Q ss_conf 4310222111121035322055424000--14567776630
Q gi|254780217|r 119 RYFLSLTANTGYWRVIMIDPVDGMNRNA--ANALLKSLEEP 157 (347)
Q Consensus 119 ~~~~~~~~~~~~~Ki~IId~ad~ln~~A--aNALLK~LEEP 157 (347)
.+.-.+-|..---+ +||.++.+++.|. -....|.++.-
T Consensus 61 ~~~~~~D~e~~~~~-~iv~~~~~f~eQ~~ai~~~~~~~~~~ 100 (223)
T TIGR02237 61 AEDRALDPERVLSN-VIVFEVFDFDEQEVAIQKTSKLIDRD 100 (223)
T ss_pred HHCCCCCHHHHHCC-EEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 63058898888415-35523535678999999999998606
No 354
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.02 E-value=0.046 Score=36.24 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=25.9
Q ss_pred HHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999828-8981663117989888999999999981
Q gi|254780217|r 24 LSQYYCSG-RMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 24 L~~~~~~~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
|...+..| .-..+.|+.||+|+||+++|..|+..=.
T Consensus 255 LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a 291 (501)
T PRK09302 255 LDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAAC 291 (501)
T ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7887259975894699988999888999999999998
No 355
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.00 E-value=0.046 Score=36.24 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEECCCCCCCHHHHHHHHHHH
Q ss_conf 631179898889999999999
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
+++-||||.||+|+|..+|+.
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999889999999997
No 356
>KOG2456 consensus
Probab=94.00 E-value=0.09 Score=33.91 Aligned_cols=150 Identities=20% Similarity=0.186 Sum_probs=86.4
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-C-CCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 8756561092999999999998288981663117989888999999999981-7-7998864312101267886799996
Q gi|254780217|r 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL-Q-NPDFSKAPVRMCNPDPCSPFVKQMA 85 (347)
Q Consensus 8 p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll-c-~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (347)
+..+.=|-|--+....|.+ .|+-| ++|+|-+.+||--+| +.|+.|. | .+-.+..||-.-..+.-.-+|++|.
T Consensus 160 ~~~~~VV~Ggv~ETt~LL~----~rfD~-IfyTGsp~VgkIim~-aAaKhLTPvtLELGGKsP~~vd~~~d~~ia~~RI~ 233 (477)
T KOG2456 160 QDLIRVVNGGVPETTELLK----QRFDH-IFYTGSPRVGKIIMA-AAAKHLTPVTLELGGKSPCYVDKNCDLKIAARRIA 233 (477)
T ss_pred CCEEEEECCCCCHHHHHHH----HHCCE-EEECCCCHHHHHHHH-HHHHCCCCEEEECCCCCCEEECCCCCHHHHHHHHH
T ss_conf 6618876089725899997----33057-886389527799999-98726775898717878724447767789999999
Q ss_pred CC---------CCCCEEEECCCCHHHCCCCCCCCCHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 78---------987545300100010134212323788755-44310222111121035322055424000145677766
Q gi|254780217|r 86 SH---------ALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 (347)
Q Consensus 86 ~~---------~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~-l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE 155 (347)
-| .-||++.++.+.-+|- |+.++. +.+|....+-+++-=-=|| |.....-+...|+
T Consensus 234 ~gk~~N~GQtCvapDYiL~~k~~~~kl--------i~alk~~l~eFYG~n~~eS~d~sRiI------n~~hf~Rl~~ll~ 299 (477)
T KOG2456 234 WGKWMNSGQTCVAPDYILCSKSIQPKL--------IDALKSTLKEFYGENPKESKDLSRII------NQRHFQRLSALLD 299 (477)
T ss_pred HHHHCCCCCEECCCCEEEECHHHHHHH--------HHHHHHHHHHHHCCCCCCCCCHHHHH------HHHHHHHHHHHHC
T ss_conf 875325787320587698657666999--------99999999998088931163488774------5788999999856
Q ss_pred HCCCCCCEEEEE-CCCCCCCHHHH
Q ss_conf 303434167650-44335730252
Q gi|254780217|r 156 EPPQKVLFILIS-HASPTILSTIR 178 (347)
Q Consensus 156 EPp~~t~fiLit-~~~~~il~TI~ 178 (347)
|+ ....+==.+ ..--.|.|||+
T Consensus 300 ~~-~kv~~Gg~~d~~d~~I~PTIL 322 (477)
T KOG2456 300 ET-GKVAIGGESDESDRYIAPTIL 322 (477)
T ss_pred CC-CCEECCCCCCHHHCCCCCEEE
T ss_conf 89-816107866634324587288
No 357
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.97 E-value=0.054 Score=35.69 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 63117989888999999999981
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
++|.||||+||.|.|..+|+..-
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89989999987999999999979
No 358
>PRK07261 topology modulation protein; Provisional
Probab=93.95 E-value=0.055 Score=35.67 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 63117989888999999999981
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
+++.|++|.||+|+|+.++..+-
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ 25 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYN 25 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999868999999999879
No 359
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.95 E-value=0.18 Score=31.52 Aligned_cols=119 Identities=16% Similarity=0.093 Sum_probs=58.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHH
Q ss_conf 16631179898889999999999817799886431210126788679999678987545300100010134212323788
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~ 114 (347)
..++++||...||+++-+.++-.++-.......||..+...+. |-++......+.... ..+--..|
T Consensus 32 ~~~iiTGpN~~GKSt~lk~i~l~~ilaq~G~~vpa~~~~~~~~-------------d~i~~~i~~~d~~~~-~~StF~~e 97 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIF-------------DSVLTRMGASDSIQH-GMSTFMVE 97 (222)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCEEECC-------------CEEEEECCCCCHHHC-CCCHHHHH
T ss_conf 4899978998872899999999999997267721456399635-------------759995067862344-52279999
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 755443102221111210353220554240-----001456777663034341676504433
Q gi|254780217|r 115 IRRIRYFLSLTANTGYWRVIMIDPVDGMNR-----NAANALLKSLEEPPQKVLFILISHASP 171 (347)
Q Consensus 115 IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----~AaNALLK~LEEPp~~t~fiLit~~~~ 171 (347)
++++..-+... ...-.+++||.-+=|. +.+-|+|+-|-+- +++.++++||...
T Consensus 98 ~~~~~~il~~~---~~~sLvliDEl~~GT~~~eg~ala~aile~l~~~-~~~~~i~tTH~~~ 155 (222)
T cd03287 98 LSETSHILSNC---TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPS 155 (222)
T ss_pred HHHHHHHHHHC---CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEECCCHH
T ss_conf 99999999867---8875442322468998357799999999999860-5889999476278
No 360
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=93.94 E-value=0.19 Score=31.38 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999999828898166311798988899999999998177
Q gi|254780217|r 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 18 ~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
+...+.|...+....=.|-+=++||||+||.|+.-.+++.+...
T Consensus 13 ~~~~~ll~~~~~~~g~a~~iGiTG~PGaGKStli~~l~~~~~~~ 56 (267)
T pfam03308 13 PEARELLRRLMPLTGRAHRVGITGVPGAGKSTLIEALGMELRRR 56 (267)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 77999999987435995599876899887999999999999968
No 361
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.94 E-value=0.11 Score=33.36 Aligned_cols=51 Identities=18% Similarity=0.386 Sum_probs=32.1
Q ss_pred HHHHHHHHH-HCCHHHHHHHHHHHHHCC--CCCCEEEEECCCCCCCHHHHCEEEEE
Q ss_conf 035322055-424000145677766303--43416765044335730252036988
Q gi|254780217|r 132 RVIMIDPVD-GMNRNAANALLKSLEEPP--QKVLFILISHASPTILSTIRSRCLSI 184 (347)
Q Consensus 132 Ki~IId~ad-~ln~~AaNALLK~LEEPp--~~t~fiLit~~~~~il~TI~SRc~~i 184 (347)
+|.|.||+= .|...+...+++.|.+-. .+..+|++||+.+.+ . +-.|...+
T Consensus 157 ~lLilDEPTs~LD~~~~~~i~~~l~~l~~~~g~Tvi~iTHdl~~v-~-~aDrvivm 210 (276)
T PRK13650 157 KIIILDEATSMLDPEGRLELIKTIKNIRDDYQLTVISITHDLDEV-A-LSDRVLVM 210 (276)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHH-H-CCCEEEEE
T ss_conf 999983886658999999999999999984298999995778999-6-09999999
No 362
>PRK10436 hypothetical protein; Provisional
Probab=93.92 E-value=0.21 Score=30.96 Aligned_cols=56 Identities=13% Similarity=0.019 Sum_probs=42.2
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 6555587565610929999999999982889816631179898889999999999817
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
...-.|..++++--.+...+.|.+.+.... --+|++||.|+||+|+-.++.+.+..
T Consensus 186 ~~~~~~~~L~~LG~~~~~~~~~~~~~~~p~--GliLvtGPTGSGKTTTLya~L~~l~~ 241 (461)
T PRK10436 186 QQVQQTLDLETLGMTPAQLAQFRQALQQPQ--GLVLVTGPTGSGKTVTLYSALQTLNT 241 (461)
T ss_pred CCCCCCCCHHHHCCCHHHHHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 466566888784889999999999983899--77999789999569999999974346
No 363
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=93.90 E-value=0.17 Score=31.70 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=27.7
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99999828898166311798988899999999998
Q gi|254780217|r 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 24 L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
|-+.+....-|--+|+-|.+|+||+|+|-.+|..|
T Consensus 252 lwR~ir~~~~PiiILIGGaSGvGKSTlAseLA~RL 286 (492)
T PRK12337 252 LLRVLRKPPRPLHVLLGGVSGTGKSVLAAELAYRL 286 (492)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997356887699960788866888999999960
No 364
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.90 E-value=0.065 Score=35.04 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=25.3
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8166311798988899999999998177
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
+.||+..|+.|+||+|.+.++|+.+-|.
T Consensus 3 ~~a~VVmGVsGsGKSTvg~~LA~~L~~~ 30 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 8579998289899899999999995987
No 365
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.89 E-value=0.12 Score=32.90 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 09299999999999828898166311798988899999999998
Q gi|254780217|r 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 15 ~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+-+.+....|..+++.++ .+++.|+-|.||||++.+++.++
T Consensus 144 ~~~~~~~~fL~~aV~~r~---NilI~G~TgSGKTTll~aL~~~i 184 (332)
T PRK13900 144 LAEKKIKEFLEHAVISKK---NIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHCC
T ss_conf 410579999999986487---19998888988999999998358
No 366
>KOG1805 consensus
Probab=93.80 E-value=0.21 Score=30.98 Aligned_cols=157 Identities=15% Similarity=0.092 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHH------------HH
Q ss_conf 999999999998288981663117989888999999999981779988643121012678867999------------96
Q gi|254780217|r 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ------------MA 85 (347)
Q Consensus 18 ~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~------------i~ 85 (347)
+++.+.+..+..... + -|+.|-||+||+|+.-.+.+.|+.....---. ..++.+.+....+ ..
T Consensus 672 ~dQr~A~~k~L~aed--y-~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLt--syThsAVDNILiKL~~~~i~~lRLG~~ 746 (1100)
T KOG1805 672 NDQRQALLKALAAED--Y-ALILGMPGTGKTTTISLLIKILVALGKKVLLT--SYTHSAVDNILIKLKGFGIYILRLGSE 746 (1100)
T ss_pred HHHHHHHHHHHHCCC--H-HEEECCCCCCCHHHHHHHHHHHHHCCCEEEEE--EHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 899999999873033--2-20326998981225999999999738818998--505678899999875067110344872
Q ss_pred CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC--------------CCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 78987545300100010134212323788755443102221111--------------2103532205542400014567
Q gi|254780217|r 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG--------------YWRVIMIDPVDGMNRNAANALL 151 (347)
Q Consensus 86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~--------------~~Ki~IId~ad~ln~~AaNALL 151 (347)
...||++..+.. .++ -+++..-.+.+++..++..+ .+-+||||+|-.+..
T Consensus 747 ~kih~~v~e~~~-~~~--------~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~l------- 810 (1100)
T KOG1805 747 EKIHPDVEEFTL-TNE--------TSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQILL------- 810 (1100)
T ss_pred CCCCHHHHHHHC-CCC--------CCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCEEEECCCCCCCC-------
T ss_conf 224468998712-344--------5453399999972897679997157886555214267899865111143-------
Q ss_pred HHHHHCC-CCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH
Q ss_conf 7766303-4341676504433573025203698864799989999999
Q gi|254780217|r 152 KSLEEPP-QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198 (347)
Q Consensus 152 K~LEEPp-~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L 198 (347)
-+.=-|= =...|+|+- +...++|-.+||-- +-..++.+.++...
T Consensus 811 P~~LgPL~~s~kFVLVG-Dh~QLpPLV~s~ea--r~~Gl~~SLFkrL~ 855 (1100)
T KOG1805 811 PLCLGPLSFSNKFVLVG-DHYQLPPLVRSSEA--RQEGLSESLFKRLS 855 (1100)
T ss_pred CHHHHHHHHCCEEEEEC-CCCCCCCCCCCHHH--HHCCCCHHHHHHHH
T ss_conf 42121021123589964-63337863036455--55673459999986
No 367
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.73 E-value=0.06 Score=35.31 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 29999999999982889816631179898889999999999817
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
|+..+..-.+.-..|.-|..+-|+|.+|.||+|+|.++.+.|..
T Consensus 7 ~~~~v~~~~r~~~~~~kg~viWlTGLSGSGKTTlA~~L~~~L~~ 50 (198)
T PRK03846 7 HQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred ECCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 47887999999986899869998799999889999999999997
No 368
>KOG0922 consensus
Probab=93.69 E-value=0.26 Score=30.25 Aligned_cols=151 Identities=18% Similarity=0.213 Sum_probs=75.5
Q ss_pred CCCCCCHHHHCCHH------HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC--
Q ss_conf 55587565610929------9999999999828898166311798988899999999998177998864312101267--
Q gi|254780217|r 5 AFDPVYNQRLFGHE------DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP-- 76 (347)
Q Consensus 5 ~~~p~~~~~i~G~~------~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~-- 76 (347)
.+.+.....+..|. ...+.+...++.+.+ .++.|+-|+||+|- +-++|....-...+ .-.|+-+.
T Consensus 34 ~~~~~~~~~i~~qR~~LPI~~~r~~il~~ve~nqv---lIviGeTGsGKSTQ---ipQyL~eaG~~~~g-~I~~TQPRRV 106 (674)
T KOG0922 34 SYGKSTNLSIQEQRESLPIYKYRDQILYAVEDNQV---LIVIGETGSGKSTQ---IPQYLAEAGFASSG-KIACTQPRRV 106 (674)
T ss_pred CCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCE---EEEECCCCCCCCCC---HHHHHHHCCCCCCC-CEEEECCCHH
T ss_conf 24654435788763159989999999999987877---99984898985332---76999862656688-2775067167
Q ss_pred -CCHHHHHHHC------CCCCCEEEECCCCHHHCCCCCCCCCH--HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--HH
Q ss_conf -8867999967------89875453001000101342123237--8875544310222111121035322055424--00
Q gi|254780217|r 77 -CSPFVKQMAS------HALHDFLYLSYSLNPKTGKWRTVITV--DEIRRIRYFLSLTANTGYWRVIMIDPVDGMN--RN 145 (347)
Q Consensus 77 -~~~~~~~i~~------~~hpd~~~i~~~~~~k~~~~~~~I~v--d~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln--~~ 145 (347)
.-...++++. |..-.+ .|+ +++-+.. ++.|+- |-+ |.+.+-.-|...+|-|+|||+||.=+ .+
T Consensus 107 AavslA~RVAeE~~~~lG~~VGY-~IR--Fed~ts~-~TrikymTDG~--LLRE~l~Dp~LskYsvIIlDEAHERsl~TD 180 (674)
T KOG0922 107 AAVSLAKRVAEEMGCQLGEEVGY-TIR--FEDSTSK-DTRIKYMTDGM--LLREILKDPLLSKYSVIILDEAHERSLHTD 180 (674)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEE-EEE--ECCCCCC-CEEEEEECCHH--HHHHHHCCCCCCCCCEEEEECHHHHHHHHH
T ss_conf 78889999999858976762226-998--4566787-33699961359--999885087645444899832231015788
Q ss_pred HHHHHHHH-HHHCCCCCCEEEEEC
Q ss_conf 01456777-663034341676504
Q gi|254780217|r 146 AANALLKS-LEEPPQKVLFILISH 168 (347)
Q Consensus 146 AaNALLK~-LEEPp~~t~fiLit~ 168 (347)
-.=.|||- +...|+--++|..++
T Consensus 181 iLlGlLKki~~~R~~LklIimSAT 204 (674)
T KOG0922 181 ILLGLLKKILKKRPDLKLIIMSAT 204 (674)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 999999998732778369999235
No 369
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.68 E-value=0.044 Score=36.46 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=13.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHH
Q ss_conf 6631179898889999999999
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
-+++-|.||+|||+||..+|..
T Consensus 196 LiIiaARPsmGKTafalnia~n 217 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAEN 217 (421)
T ss_pred EEEEEEECCCCHHHHHHHHHHH
T ss_conf 8999854678745999999999
No 370
>PRK08006 replicative DNA helicase; Provisional
Probab=93.68 E-value=0.098 Score=33.62 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 898166311798988899999999998
Q gi|254780217|r 32 RMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 32 ~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+-.+-+++-|.||.||+++|+.+|...
T Consensus 222 ~~G~LiviaaRPsmGKTalalnia~~~ 248 (471)
T PRK08006 222 QPSDLIIVAARPSMGKTTFAMNLCENA 248 (471)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 217389999469987699999999999
No 371
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.68 E-value=0.09 Score=33.91 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 09299999999999828898166311798988899999999998177
Q gi|254780217|r 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 15 ~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
+-|...+....+....+.-|-.+-|+|.+|.||+|+|.++.+.|...
T Consensus 4 ~w~~~~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 4 VWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 23632158888988727998599964688887879999999999975
No 372
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=93.67 E-value=0.32 Score=29.46 Aligned_cols=159 Identities=13% Similarity=0.061 Sum_probs=81.4
Q ss_pred CCCCE-EEEECCCCCCCHHHHHHHHHHHHHCCC-C-CCC----CCHHHCCCCCCCHHHHHHHC-----C-CCCCEE----
Q ss_conf 88981-663117989888999999999981779-9-886----43121012678867999967-----8-987545----
Q gi|254780217|r 31 GRMHH-ALLFEGEQGIGKATLGFRYAGHVLQNP-D-FSK----APVRMCNPDPCSPFVKQMAS-----H-ALHDFL---- 93 (347)
Q Consensus 31 ~~l~h-a~Lf~Gp~GiGK~~~A~~~A~~llc~~-~-~~~----~~~~~~~~~~~~~~~~~i~~-----~-~hpd~~---- 93 (347)
..=++ -+.+..|-|.|||.++..+|.+.+... . .+. -|...+.-+.....+....- . .|-...
T Consensus 210 ~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~ 289 (733)
T COG1203 210 LEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLL 289 (733)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 22557518999168887199999999997531135456289965589999999999987512355433100131025565
Q ss_pred --------EECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHCCHH-HHHHHHHHHHHCC--
Q ss_conf --------30010001013421232378875544310222111----12103532205542400-0145677766303--
Q gi|254780217|r 94 --------YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT----GYWRVIMIDPVDGMNRN-AANALLKSLEEPP-- 158 (347)
Q Consensus 94 --------~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~----~~~Ki~IId~ad~ln~~-AaNALLK~LEEPp-- 158 (347)
......+.-....-..+.+.-+..+........+. =..-++|+|++|.|..+ ...++++++|=-.
T Consensus 290 ~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~ 369 (733)
T COG1203 290 LEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEA 369 (733)
T ss_pred HCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 17010022588812422362045222069998557404667257788764677874275416543089999999999968
Q ss_pred CCCCEEEEECCCCCCCHHHHCEEEEEECCCC
Q ss_conf 4341676504433573025203698864799
Q gi|254780217|r 159 QKVLFILISHASPTILSTIRSRCLSIKFNSL 189 (347)
Q Consensus 159 ~~t~fiLit~~~~~il~TI~SRc~~i~f~~l 189 (347)
...+++++++-|..+-.=+.+++....-...
T Consensus 370 g~~ill~SATlP~~~~~~l~~~~~~~~~~~~ 400 (733)
T COG1203 370 GVPVLLMSATLPPFLKEKLKKALGKGREVVE 400 (733)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEECC
T ss_conf 9978999278997999999998503761213
No 373
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.64 E-value=0.053 Score=35.78 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=58.5
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHH
Q ss_conf 63117989888999999999981779988643121012678867999967898754530010001013421232378875
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR 116 (347)
++++||...||+++-+.++-.++-.......||..+...+.+...- .+.. .+.-... .+--..|++
T Consensus 2 ~iiTGpN~sGKSt~lk~i~l~~~laq~G~~vpa~~~~~~~~d~i~~-----------~i~~-~d~~~~~--~S~F~~e~~ 67 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFT-----------RIGA-SDSLAQG--LSTFMVEMK 67 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCEEEE-----------EECC-CCCCCCC--CCHHHHHHH
T ss_conf 8997999884899999999999999978886157719950310023-----------3564-1002156--418999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 5443102221111210353220554240-----001456777663034341676504433
Q gi|254780217|r 117 RIRYFLSLTANTGYWRVIMIDPVDGMNR-----NAANALLKSLEEPPQKVLFILISHASP 171 (347)
Q Consensus 117 ~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----~AaNALLK~LEEPp~~t~fiLit~~~~ 171 (347)
++...+... ++.-.+++||.-.=|. ..+-|+++.|-+ ..++.++++||..+
T Consensus 68 ~~~~il~~~---~~~sLvliDEl~~GT~~~eg~ala~aile~l~~-~~~~~~iitTH~~e 123 (185)
T smart00534 68 ETANILKNA---TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHE 123 (185)
T ss_pred HHHHHHHHC---CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHH
T ss_conf 999999838---987376304113688814789999999999996-36975998604378
No 374
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.62 E-value=0.07 Score=34.80 Aligned_cols=156 Identities=22% Similarity=0.276 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCC-
Q ss_conf 09299999999999828898--166311798988899999999998177998864312101267886799996789875-
Q gi|254780217|r 15 FGHEDIEKFLSQYYCSGRMH--HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD- 91 (347)
Q Consensus 15 ~G~~~~~~~L~~~~~~~~l~--ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd- 91 (347)
.|+++.=+.|- |-+| .-.|+.|+.|.||+.+-++|+--.|.+.....+..-+. +.....+++++.+++=
T Consensus 12 ~gndelDkrLG-----GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~---T~refi~qm~sl~ydv~ 83 (235)
T COG2874 12 SGNDELDKRLG-----GGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL---TVREFIKQMESLSYDVS 83 (235)
T ss_pred CCCHHHHHHCC-----CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECH---HHHHHHHHHHHCCCCCH
T ss_conf 78477786516-----99746769999888985488999999998870895489998403---59999998886388716
Q ss_pred -------EEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHH----HHHHHHHHHHHCCCC
Q ss_conf -------453001000101342123237887554431022211112103532205542400----014567776630343
Q gi|254780217|r 92 -------FLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN----AANALLKSLEEPPQK 160 (347)
Q Consensus 92 -------~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~----AaNALLK~LEEPp~~ 160 (347)
+.+++...+ +-.....+-|.+.+.+....-....-|+|||........ +.+-++..+-.-.++
T Consensus 84 ~~~l~G~l~~~~~~~~------~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~ 157 (235)
T COG2874 84 DFLLSGRLLFFPVNLE------PVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDL 157 (235)
T ss_pred HHHHCCEEEEEEECCC------CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 8775062689993245------4225737789999999755775237789995343776526499999999999998728
Q ss_pred CCEEEEECCCCCCCH----HHHCEEEEE
Q ss_conf 416765044335730----252036988
Q gi|254780217|r 161 VLFILISHASPTILS----TIRSRCLSI 184 (347)
Q Consensus 161 t~fiLit~~~~~il~----TI~SRc~~i 184 (347)
...|++|-+|+.+.. -|||=|-.+
T Consensus 158 gKvIilTvhp~~l~e~~~~rirs~~d~~ 185 (235)
T COG2874 158 GKVIILTVHPSALDEDVLTRIRSACDVY 185 (235)
T ss_pred CCEEEEEECHHHCCHHHHHHHHHHHHEE
T ss_conf 9789999473433789999998752025
No 375
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=93.61 E-value=0.065 Score=35.06 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 816631179898889999999999
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
...+|++||||+||+++|..|+..
T Consensus 19 gs~~LI~G~pGsGKT~la~qfl~~ 42 (231)
T pfam06745 19 GRVVLITGGPGTGKTIFGLQFLYN 42 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 969999858972599999999999
No 376
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.61 E-value=0.2 Score=31.07 Aligned_cols=21 Identities=43% Similarity=0.501 Sum_probs=17.7
Q ss_pred EEECCCCCCCHHHHHHHHHHH
Q ss_conf 631179898889999999999
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
+-+.||.|+||+|+...++..
T Consensus 39 v~ivG~sGsGKSTLl~~i~Gl 59 (228)
T PRK10584 39 IALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999985899999999669
No 377
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.59 E-value=0.27 Score=30.09 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=40.1
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 875656109299999999999828898166311798988899999999998177
Q gi|254780217|r 8 PVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 8 p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
+-.|+++-......+.+.+.+.... -=+|++||-|+||+|+-..+.+.++..
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~p~--GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNRPQ--GLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred CCCHHHHCCCHHHHHHHHHHHHCCC--EEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 6888783899889999999972897--089996899998899999999986278
No 378
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=93.55 E-value=0.17 Score=31.78 Aligned_cols=135 Identities=19% Similarity=0.267 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH---------HCCCCCCCHHHHHHHCC
Q ss_conf 9999999999982889816631-1798988899999999998177998864312---------10126788679999678
Q gi|254780217|r 18 EDIEKFLSQYYCSGRMHHALLF-EGEQGIGKATLGFRYAGHVLQNPDFSKAPVR---------MCNPDPCSPFVKQMASH 87 (347)
Q Consensus 18 ~~~~~~L~~~~~~~~l~ha~Lf-~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~---------~~~~~~~~~~~~~i~~~ 87 (347)
++..+.|.+.++ -||++++ +||=|+||+|+=++--..|+.. +.+--.|. .-+.--+.+.---++.|
T Consensus 231 ~~~l~~~~~li~---rpHGIiLVTGPTGSGKtTTLYaaL~~LN~~-~~NIlTvEDPVEY~i~GIgQ~Qvn~kIglTFA~G 306 (495)
T TIGR02533 231 PELLSSLERLIK---RPHGIILVTGPTGSGKTTTLYAALSRLNTP-ERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAG 306 (495)
T ss_pred HHHHHHHHHHHH---CCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCEEEEECCEEEEECCCCEEEECCCCCHHHHHH
T ss_conf 889999999971---889618841778985258899999863589-9715686578247624876365146543038888
Q ss_pred ------CCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHH-H-CCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH---H
Q ss_conf ------987545300100010134212323788755443-1-0222111121035322055424000145677766---3
Q gi|254780217|r 88 ------ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY-F-LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE---E 156 (347)
Q Consensus 88 ------~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~-~-~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE---E 156 (347)
.-|| .|=|-|||++-. . +-..|..|. .++--.| |.+||-|+=..+= |
T Consensus 307 LRaILRQDPD-----------------iiMvGEIRD~ETA~IAiQASLTGH---LVLSTLH--TNDAAgAvtRL~DMGvE 364 (495)
T TIGR02533 307 LRAILRQDPD-----------------IIMVGEIRDLETAQIAIQASLTGH---LVLSTLH--TNDAAGAVTRLIDMGVE 364 (495)
T ss_pred HHHHHCCCCC-----------------EEEEECCCCHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHCCCC
T ss_conf 7886427998-----------------899823160689999998764325---7655655--40154466555325864
Q ss_pred CCCCCCEEEEECCCCCCCH-----HHHCEEEEE
Q ss_conf 0343416765044335730-----252036988
Q gi|254780217|r 157 PPQKVLFILISHASPTILS-----TIRSRCLSI 184 (347)
Q Consensus 157 Pp~~t~fiLit~~~~~il~-----TI~SRc~~i 184 (347)
| +|+|+....+|. +|-+-|..=
T Consensus 365 P------FL~aSsl~GVLAQRLVRrlCp~Cke~ 391 (495)
T TIGR02533 365 P------FLLASSLLGVLAQRLVRRLCPHCKEP 391 (495)
T ss_pred H------HHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 0------48999999999863343315146888
No 379
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.52 E-value=0.073 Score=34.67 Aligned_cols=123 Identities=14% Similarity=0.011 Sum_probs=54.5
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHH
Q ss_conf 63117989888999999999981779988643121012678867999967898754530010001013421232378875
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR 116 (347)
++|.||||+||.|.|..+|+..-.. .-.+|.+- ...+.+++. --..+. ...++++-....|.++=+
T Consensus 3 iillG~PGsGKgTqa~~la~~~~~~----~is~Gdll-------R~~i~~~s~-~g~~i~-~~~~~G~lVpd~i~~~lv- 68 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIP----HISTGDML-------RAAIKAGTE-LGKEAK-SYMDAGELVPDEIVIGLV- 68 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCE----EECHHHHH-------HHHHHCCCH-HHHHHH-HHHHCCCCCCHHHHHHHH-
T ss_conf 9998999998799999999986991----78688999-------999873998-899999-999779877889999999-
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC--CCCEEEEECCCCCCCHHHHCE
Q ss_conf 5443102221111210353220554240001456777663034--341676504433573025203
Q gi|254780217|r 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQ--KVLFILISHASPTILSTIRSR 180 (347)
Q Consensus 117 ~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~--~t~fiLit~~~~~il~TI~SR 180 (347)
.+.+..... .+-+|+|..=+- .+.|.+|-+.++++.. ..++.|-++. +-+..-+..|
T Consensus 69 --~~~l~~~~~---~~G~IlDGfPRt-~~Qa~~l~~~l~~~~~~i~~Vi~l~v~~-~~~~~Rl~~R 127 (215)
T PRK00279 69 --KERLAQPDC---ANGFLLDGFPRT-IPQAEALDEMLKEAGIKLDAVIEIDVPD-EELVERLSGR 127 (215)
T ss_pred --HHHHHCCCC---CCEEEEECCCCC-HHHHHHHHHHHHHCCCCCCEEEEEECCH-HHHHHHHHCC
T ss_conf --999836565---570798689998-7999999999986499868899996889-9999998611
No 380
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.47 E-value=0.077 Score=34.48 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=23.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8166311798988899999999998177
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
...+|++|+||+||++||..|+...+..
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ 50 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGARE 50 (260)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9789999389986899999999977626
No 381
>PRK02496 adk adenylate kinase; Provisional
Probab=93.47 E-value=0.076 Score=34.51 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.6
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 63117989888999999999981
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
++|.||||+||.|.|..+|+..-
T Consensus 4 iillG~PGSGKgTqa~~L~~~~~ 26 (185)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLQ 26 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99979999998999999999969
No 382
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.42 E-value=0.18 Score=31.56 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=18.9
Q ss_pred EEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 66311798988899999999998
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
-+-+.||.|+||+|+.+.++..+
T Consensus 28 i~~iiG~nGaGKSTLl~~i~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998899998999999995685
No 383
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=93.35 E-value=0.072 Score=34.68 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=26.7
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 828898166311798988899999999998177
Q gi|254780217|r 29 CSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 29 ~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
..+...-.+=|||++|.||+|+|-|+.+.|...
T Consensus 14 ~~~h~g~vlWlTGLSGsGKsTiA~Al~~~L~~~ 46 (187)
T TIGR00455 14 LNKHRGVVLWLTGLSGSGKSTIANALEKKLEKK 46 (187)
T ss_pred HCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 627973898511688563579999999999966
No 384
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.32 E-value=0.59 Score=27.36 Aligned_cols=129 Identities=15% Similarity=0.144 Sum_probs=67.6
Q ss_pred CCCHHHHCCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 8756561092999---9999999982889816631179898889999999999817799886431210126788679999
Q gi|254780217|r 8 PVYNQRLFGHEDI---EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM 84 (347)
Q Consensus 8 p~~~~~i~G~~~~---~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i 84 (347)
+..-++++|-+.. ...+.-+-..|+ .-..||-.|+||++.+..++..--..--....||..-. -.|..+
T Consensus 68 ~~~~~~~l~tkt~r~~~~~~~~A~k~g~---l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a~-----~~i~~i 139 (297)
T COG2842 68 EKLAPDFLETKTVRRIFFRTRPASKTGS---LVVVYGYAGLGKTQAAKNYAPSNPNALLIEADPSYTAL-----VLILII 139 (297)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCC---EEEEECCCCCHHHHHHHHHCCCCCCCEEECCCHHHHHH-----HHHHHH
T ss_conf 5466432035024767542055551685---47886332200689998653358641361588136788-----999999
Q ss_pred HCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 67898754530010001013421232378875544310222111121035322055424000145677766303434167
Q gi|254780217|r 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 (347)
Q Consensus 85 ~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fi 164 (347)
. ....+ +.-..++....+..-. ..+.-+.+|+|+||.|-..|.--+.|..++-+ .-+.
T Consensus 140 ~--------------~~~~~-----~~~~~~~d~~~~~~~~-l~~~~~~iivDEA~~L~~~ale~lr~i~d~~G--i~~v 197 (297)
T COG2842 140 C--------------AAAFG-----ATDGTINDLTERLMIR-LRDTVRLIIVDEADRLPYRALEELRRIHDKTG--IGVV 197 (297)
T ss_pred H--------------HHHHC-----CCCHHHHHHHHHHHHH-HCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHC--CEEE
T ss_conf 9--------------98740-----1421688889999999-71576526650321258689999999887508--1599
Q ss_pred EE
Q ss_conf 65
Q gi|254780217|r 165 LI 166 (347)
Q Consensus 165 Li 166 (347)
|+
T Consensus 198 Lv 199 (297)
T COG2842 198 LV 199 (297)
T ss_pred EE
T ss_conf 83
No 385
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=93.31 E-value=0.11 Score=33.22 Aligned_cols=137 Identities=17% Similarity=0.092 Sum_probs=75.7
Q ss_pred HHHCCHHHHHHHHHHHHHC--------CCC-------------CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 5610929999999999982--------889-------------8166311798988899999999998177998864312
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCS--------GRM-------------HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVR 70 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~--------~~l-------------~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~ 70 (347)
..|.|++++++-+.-.+=. ++. -| +|+.|.||++|..+-....+ +- +-+-+.+|
T Consensus 451 PSI~~~~dvKkgillqLFGg~~k~~~~~~~~~~~~~~~~~RgdIn-iLl~GDPgtaKSQlL~yv~~-ia---PRgvytsG 525 (916)
T PTZ00111 451 PSIKARNNVKIGLLCQLFSCNANSSDNNKSPDACYKVDNFRGIIN-VLLCGDPGTAKSQLLHYTHL-LS---PRSIYTSG 525 (916)
T ss_pred CHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEE-EEEECCCCCCHHHHHHHHHH-HC---CCEEEECC
T ss_conf 621152269999999984887545677877654444444345405-99957996018999999997-28---74267459
Q ss_pred HCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHH--HHH-HHHHCCCCCCCCCCHHHHHHHHHHCCHHHH
Q ss_conf 10126788679999678987545300100010134212323788--755-443102221111210353220554240001
Q gi|254780217|r 71 MCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE--IRR-IRYFLSLTANTGYWRVIMIDPVDGMNRNAA 147 (347)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~--IR~-l~~~~~~~~~~~~~Ki~IId~ad~ln~~Aa 147 (347)
.-++ -..+-- .+.+++ -++ ..+.-.+ ..+..-|+-||+.|+|+.+..
T Consensus 526 kgsS--------------avGLTA--------------~v~~~d~~tg~~~LEaGAL--VLaD~GvccIDEFDKM~~~~r 575 (916)
T PTZ00111 526 KSSS--------------SVGLTA--------------SIKFNESDNGRAMIQPGAV--VLANGGVCCIDELDKCHNESR 575 (916)
T ss_pred CCCC--------------CCCCEE--------------EEEECCCCCCCEEEECCCE--EECCCCEEEEEHHHCCCHHHH
T ss_conf 8654--------------226468--------------9983268878689854808--972798799622203685678
Q ss_pred HHHHHHHHHCCCCCCEE---------------EEECC--------------CCCCCHHHHCEEEEEEC
Q ss_conf 45677766303434167---------------65044--------------33573025203698864
Q gi|254780217|r 148 NALLKSLEEPPQKVLFI---------------LISHA--------------SPTILSTIRSRCLSIKF 186 (347)
Q Consensus 148 NALLK~LEEPp~~t~fi---------------Lit~~--------------~~~il~TI~SRc~~i~f 186 (347)
.+|.-.||. .|+=| |.+.| --.++|||.||.-.+.+
T Consensus 576 s~lhEaMEQ---QtvSIAKAGI~~tLnARtSvLAaANP~~gry~~~~~v~enI~lpp~LLSRFDLIfl 640 (916)
T PTZ00111 576 LSLYEVMEQ---QTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYL 640 (916)
T ss_pred HHHHHHHHH---HHHHHHHCCEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHEEEE
T ss_conf 899998866---31235323504541203456553286556578786767645799403312204677
No 386
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.22 Score=30.80 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=44.3
Q ss_pred CCCCCHHHHHH-HHHHCCCCCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 12323788755-44310222111121035322055-424000145677766303434167650443357
Q gi|254780217|r 107 RTVITVDEIRR-IRYFLSLTANTGYWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTI 173 (347)
Q Consensus 107 ~~~I~vd~IR~-l~~~~~~~~~~~~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~i 173 (347)
+..+|.-|.+. ...+.-++ +..+++.||+- .+..++...++..|.+--++...|++||..+.+
T Consensus 454 G~~LSgGQ~QRlaLARAll~----~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~ 518 (559)
T COG4988 454 GAGLSGGQAQRLALARALLS----PASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDA 518 (559)
T ss_pred CCCCCHHHHHHHHHHHHHCC----CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCHHHH
T ss_conf 88778999999999998558----888898548756798767999999999997278699997673778
No 387
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.28 E-value=0.084 Score=34.16 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.6
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 63117989888999999999981
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
++|-||||+||.|.|..+|+..-
T Consensus 3 iillGpPGsGKgT~a~~l~~~~~ 25 (225)
T PTZ00088 3 IVLFGAPGVGKGTFAEILSKKEK 25 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999987999999999879
No 388
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.26 E-value=0.13 Score=32.75 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=30.9
Q ss_pred CCHHHHHHHHH-HCCHHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCH
Q ss_conf 21035322055-424000145677766303-43416765044335730
Q gi|254780217|r 130 YWRVIMIDPVD-GMNRNAANALLKSLEEPP-QKVLFILISHASPTILS 175 (347)
Q Consensus 130 ~~Ki~IId~ad-~ln~~AaNALLK~LEEPp-~~t~fiLit~~~~~il~ 175 (347)
.-+++|+||.- .|...+...+.+.+.+-. ++..+|++||+.+-+..
T Consensus 98 ~p~ililDEPtsgLD~~~~~~l~~~i~~l~~~g~tii~vtH~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 999999969876689999999999999999689999999089999999
No 389
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.25 E-value=0.083 Score=34.19 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 631179898889999999999817
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
++..|+.|+||+|+|.++|..+-+
T Consensus 2 iiv~GvsGsGKSTia~~La~~lg~ 25 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGA 25 (150)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 899918999999999999997199
No 390
>TIGR01128 holA DNA polymerase III, delta subunit; InterPro: IPR005790 DNA polymerase III delta (holA, ) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex sub-assembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. Both delta and delta prime are monomeric in their native state, and they bind each other tightly to form a 1:1 complex. Neither delta nor delta prime alone binds tightly to the gamma subunit . ; GO: 0003677 DNA binding, 0003891 delta DNA polymerase activity, 0006260 DNA replication, 0043625 delta DNA polymerase complex.
Probab=93.21 E-value=0.82 Score=26.22 Aligned_cols=157 Identities=11% Similarity=0.076 Sum_probs=110.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
+..|+++|+.-.-....+..+..... ...... ++..++.. --
T Consensus 2 ~~~y~~~G~~~~l~~~~~~~~~~~~~-~~~~~~------------------------~~~~~~~~-------------~~ 43 (331)
T TIGR01128 2 APVYLLYGDEPLLLEEAADAIRAAAL-PGFDEF------------------------NLFTIDGE-------------EF 43 (331)
T ss_pred CCCEEECCCCHHHHHHHHHHHHHHHC-CCCHHH------------------------HHHHCCCC-------------CC
T ss_conf 64035406405578999999998740-242012------------------------23210332-------------00
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-HH-----HHHHHHHHHHCCCCCCEEEEEC--CCCCC------CH-HHH
Q ss_conf 8755443102221111210353220554240-00-----1456777663034341676504--43357------30-252
Q gi|254780217|r 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-NA-----ANALLKSLEEPPQKVLFILISH--ASPTI------LS-TIR 178 (347)
Q Consensus 114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-~A-----aNALLK~LEEPp~~t~fiLit~--~~~~i------l~-TI~ 178 (347)
+.-.+.......|..+.+|++++..+..... .. ..++.+.++.||+.|..++... ..++- +. +..
T Consensus 44 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 123 (331)
T TIGR01128 44 DWGQLLESAQTLPLFSERRLVELRLPSGLPGAKGKLEHLLKALLEYLANPPPDTLLLIEAPYEKLDKRKKLTKWLKKALD 123 (331)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 37788877641355444405665333343441002566799999873146765378874163013456777767666543
Q ss_pred C-EEEEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 0-369886479998999999997----2788896789999997598978999881
Q gi|254780217|r 179 S-RCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKIL 228 (347)
Q Consensus 179 S-Rc~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll 228 (347)
. ....+.+.++...++..|+.. .+.....+....+.....|+...+..-+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 178 (331)
T TIGR01128 124 NKNAEIVECKTPDEQELPRWIQARLKELGLRIDPDAVQLLAELVEGNLLALAQEL 178 (331)
T ss_pred HHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 2101231023443556689999999970786545899999987253078888777
No 391
>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=93.20 E-value=0.82 Score=26.21 Aligned_cols=143 Identities=14% Similarity=0.215 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCC--EEE
Q ss_conf 299999999999828898166311798988899999999998177998864312101267886799996789875--453
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHD--FLY 94 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd--~~~ 94 (347)
|.+.++-|...+++++ . =|+-=.-|.|||..+.++...+...........-.|.......=.+.+..- .|+ +..
T Consensus 2 Q~~gv~wl~~~~~~~~--g-giLaDeMGLGKTiq~ia~l~~~~~~~~~~~~~LIV~P~sl~~~W~~Ei~~~-~~~~~~~~ 77 (295)
T pfam00176 2 QLEGVNWLISLYNNGL--G-GILADEMGLGKTLQTISLLAYLKELKPLAGPHLVVCPLSTLDNWLNEFEKW-APDLNIVV 77 (295)
T ss_pred HHHHHHHHHHHHHCCC--C-EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHH-CCCCCEEE
T ss_conf 7889999999872799--9-897227875799999999999998388999889997578887678899986-79970799
Q ss_pred ECCCCHHHCCC-------CC---CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 00100010134-------21---232378875544310222111121035322055424000145677766303434167
Q gi|254780217|r 95 LSYSLNPKTGK-------WR---TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 (347)
Q Consensus 95 i~~~~~~k~~~-------~~---~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fi 164 (347)
+........+. .. -..+-+.++.....+. .-.|..+|+||||.+-. .....-|.+-.-.....++
T Consensus 78 ~~~~~~~r~~~~~~~~~~~~~~ivitsY~~~~~~~~~l~----~~~w~~vI~DEaH~iKN-~~s~~~~a~~~l~~~~r~~ 152 (295)
T pfam00176 78 YYGDGDSRSELLRNVLRTGKFDVLITSYEYIRRDKDELH----KANWRYVILDEGHRIKN-AKSKLSLALKSLKTNNRLL 152 (295)
T ss_pred EEECHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH----CCCCCEEEEECCCCCCC-HHHHHHHHHHHCCCCCEEE
T ss_conf 984707689998867741688599930999997599984----08765899876201258-7889999999523581899
Q ss_pred EEEC
Q ss_conf 6504
Q gi|254780217|r 165 LISH 168 (347)
Q Consensus 165 Lit~ 168 (347)
|+-+
T Consensus 153 LTGT 156 (295)
T pfam00176 153 LTGT 156 (295)
T ss_pred EECC
T ss_conf 8687
No 392
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.14 E-value=0.11 Score=33.12 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9816631179898889999999999817
Q gi|254780217|r 33 MHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 33 l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
=+-.+-|+|.+|+||+|+|.++.+.|..
T Consensus 6 kg~viW~TGLsGSGKTTiA~~l~~~L~~ 33 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8679997899999899999999999997
No 393
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=93.13 E-value=0.13 Score=32.64 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=36.5
Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 5610929999999999982889816631179898889999999999817
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
..+.-|+..+..=.++-..|.-|..+.|+|.+|.||+|+|.++.+.|..
T Consensus 421 ~ni~w~~~~V~~~~R~~~~g~~~~~iw~tGlsgsGKstiA~~le~~L~~ 469 (613)
T PRK05506 421 TNVHWQALDVTREARAARKGQKPATVWFTGLSGSGKSTIANLVERRLHA 469 (613)
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7864230337999999974899769999778989747999999999997
No 394
>PRK09165 replicative DNA helicase; Provisional
Probab=93.12 E-value=0.14 Score=32.26 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 8166311798988899999999998
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
..-+++-|.||.|||+||+.+|..+
T Consensus 205 GdLiIIAARPsmGKTafaLniA~n~ 229 (484)
T PRK09165 205 SDLIILAGRPSMGKTALATNIAFNA 229 (484)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7379996079997789999999999
No 395
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.11 E-value=0.15 Score=32.22 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=51.2
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH----HHHHCCCCCCEEEECCCCHHHCCCC
Q ss_conf 889816631179898889999999999817799886431210126788679----9996789875453001000101342
Q gi|254780217|r 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV----KQMASHALHDFLYLSYSLNPKTGKW 106 (347)
Q Consensus 31 ~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~----~~i~~~~hpd~~~i~~~~~~k~~~~ 106 (347)
.+-|.-+|+.|-.|.||||++=.+|+++--. +.....+..|...|.. +.+..-..-+++-... +.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~----~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~------~~- 165 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKK----GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGT------EK- 165 (451)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHC----CCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCC------CC-
T ss_conf 8998589998156797486899999999974----994589850567868999999999860985316778------89-
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH
Q ss_conf 1232378875544310222111121035322055424000
Q gi|254780217|r 107 RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA 146 (347)
Q Consensus 107 ~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A 146 (347)
-.|+=+++-++.+. ..++-|+|||.|-++..+.
T Consensus 166 ---~Pv~Iak~al~~ak----~~~~DvvIvDTAGRl~ide 198 (451)
T COG0541 166 ---DPVEIAKAALEKAK----EEGYDVVIVDTAGRLHIDE 198 (451)
T ss_pred ---CHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHH
T ss_conf ---97999999999999----7499889996887330309
No 396
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=93.10 E-value=0.12 Score=33.00 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 816631179898889999999999817
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
+..+-|+|.+|.||+|+|.++.+.|..
T Consensus 2 G~viW~TGLsGsGKTTlA~~l~~~L~~ 28 (157)
T pfam01583 2 GCTVWFTGLSGSGKSTIANALERKLFA 28 (157)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 889998898999999999999999997
No 397
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=93.09 E-value=0.085 Score=34.14 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=17.6
Q ss_pred EEECCCCCCCHHHHHHHHHHH
Q ss_conf 631179898889999999999
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
.=++||+|+||+.++..+|-.
T Consensus 46 TEi~G~~gsGKTQlc~qlav~ 66 (261)
T pfam08423 46 TEVFGEFRTGKTQLCHTLCVT 66 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899888789999999999
No 398
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.05 E-value=0.15 Score=32.12 Aligned_cols=53 Identities=23% Similarity=0.237 Sum_probs=31.4
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH---------HHHHHCCCCCCEEEE
Q ss_conf 117989888999999999981779988643121012678867---------999967898754530
Q gi|254780217|r 39 FEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF---------VKQMASHALHDFLYL 95 (347)
Q Consensus 39 f~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~hpd~~~i 95 (347)
++||||.||+|+.-.+++.+...... .+-...|+.++. .|.-....+|+++.-
T Consensus 4 itG~pGaGKStLi~~l~~~~~~~g~~----VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiR 65 (148)
T cd03114 4 ITGVPGAGKSTLIDALITALRARGKR----VAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIR 65 (148)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCE----EEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 25899787899999999999978983----799996888786686203235453441579983686
No 399
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=93.04 E-value=0.079 Score=34.39 Aligned_cols=139 Identities=18% Similarity=0.077 Sum_probs=76.6
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCC-CHHHCCCCCCCCCHHHH
Q ss_conf 63117989888999999999981779988643121012678867999967898754530010-00101342123237887
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYS-LNPKTGKWRTVITVDEI 115 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~-~~~k~~~~~~~I~vd~I 115 (347)
++|-||||+||=|-|..++..+=..+-.+++ ..|......-|==..+... ..++++=....|.++=
T Consensus 2 ~~~lGpPGsGKGTQa~~i~~~~gl~HISTGD------------llR~~~~~~T~LG~~~k~y~y~~~G~LVPD~~v~~l- 68 (232)
T TIGR01351 2 LILLGPPGSGKGTQAKRIAEKLGLPHISTGD------------LLRAAVKAGTPLGKKAKEYNYMDKGELVPDEIVNQL- 68 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCHH------------HHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHH-
T ss_conf 4675598987667999999860885020258------------999998707977898732672003775778999999-
Q ss_pred HHHHHHCCCCCCCC---CCHHHHHHHHHHCCHHHHHHHHHHHHHC--CCCCCEEEEECCCCCCCHHHHCE--------EE
Q ss_conf 55443102221111---2103532205542400014567776630--34341676504433573025203--------69
Q gi|254780217|r 116 RRIRYFLSLTANTG---YWRVIMIDPVDGMNRNAANALLKSLEEP--PQKVLFILISHASPTILSTIRSR--------CL 182 (347)
Q Consensus 116 R~l~~~~~~~~~~~---~~Ki~IId~ad~ln~~AaNALLK~LEEP--p~~t~fiLit~~~~~il~TI~SR--------c~ 182 (347)
+.+++...+..+ ..+=+|+|.-=+- .+.|-||=++|+|. |-..+|-|--++++-|..=|.+| .-
T Consensus 69 --v~~rl~~~~~~~~~~~~~GfILDGfPRT-~~QAeaL~~~l~~~g~~~d~V~~L~vp~~e~l~~R~~gR~~cp~cG~~Y 145 (232)
T TIGR01351 69 --VKERLQQNPDCVSLKSENGFILDGFPRT-LSQAEALDAMLKELGLPIDAVIELDVPDLEELVERITGRRICPSCGRVY 145 (232)
T ss_pred --HHHHHHCCCCCEEEEECCCEEECCCCCC-HHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEE
T ss_conf --9999745600011010686266388887-8999999999986189841788853587999999773273306778556
Q ss_pred EEECCCCCH
Q ss_conf 886479998
Q gi|254780217|r 183 SIKFNSLSE 191 (347)
Q Consensus 183 ~i~f~~l~~ 191 (347)
++.|.||-.
T Consensus 146 h~~f~pPk~ 154 (232)
T TIGR01351 146 HIKFNPPKV 154 (232)
T ss_pred EECCCCCCC
T ss_conf 102278867
No 400
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=93.03 E-value=0.12 Score=32.90 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=68.5
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC-CCHHHHHHHCCCCCCEEEECCCCHH--HCCCCCCCC---
Q ss_conf 6311798988899999999998177998864312101267-8867999967898754530010001--013421232---
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP-CSPFVKQMASHALHDFLYLSYSLNP--KTGKWRTVI--- 110 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~-~~~~~~~i~~~~hpd~~~i~~~~~~--k~~~~~~~I--- 110 (347)
+-+.||.|+||+|++..+++.+=- ..+....+....+. .....++.-...-.|-++++...-+ .-+ +..=
T Consensus 390 ~Ai~G~SG~GKsTLL~~L~G~l~P--~~G~vtl~G~~~~~~~~~evrr~v~~~aQ~aHlF~ttvr~NLrla--rpdaaaG 465 (566)
T TIGR02868 390 VAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLSEDEVRRRVSVFAQDAHLFDTTVRENLRLA--RPDAAAG 465 (566)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--CCCCEEECCCCHHHCCCCHHEHHEEECCCCCCCCCCCHHHHHHHC--CCCCCCC
T ss_conf 898668876578999999840289--999178777324325731100000312788621105478788731--8888998
Q ss_pred -CHHHHH-------------HHHHHCCC------CCCCC--------------CCHHHHHHH-HHHCCHHHHHHHHHHHH
Q ss_conf -378875-------------54431022------21111--------------210353220-55424000145677766
Q gi|254780217|r 111 -TVDEIR-------------RIRYFLSL------TANTG--------------YWRVIMIDP-VDGMNRNAANALLKSLE 155 (347)
Q Consensus 111 -~vd~IR-------------~l~~~~~~------~~~~~--------------~~Ki~IId~-ad~ln~~AaNALLK~LE 155 (347)
+=||+. +|-+-+.. +...| +..|+|+|| .+.+-..+...||..|=
T Consensus 466 DtdeE~~~aL~~vgL~~~~~~LP~Gl~T~~ge~G~~lSGGeRqRLALARaLl~~ap~llLDEPTehLDa~t~~~ll~dL~ 545 (566)
T TIGR02868 466 DTDEELLAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLL 545 (566)
T ss_pred CCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 88899999999715802386385767853035643010489999999999737998898608866678767999999985
Q ss_pred -HCCCCCC-----EEEEECCC
Q ss_conf -3034341-----67650443
Q gi|254780217|r 156 -EPPQKVL-----FILISHAS 170 (347)
Q Consensus 156 -EPp~~t~-----fiLit~~~ 170 (347)
.+-+... -++|||++
T Consensus 546 t~a~~g~t~~~R~vvliTH~L 566 (566)
T TIGR02868 546 TAALSGRTESARAVVLITHHL 566 (566)
T ss_pred CCCCCCCCCCCCEEEEEEECC
T ss_conf 055446558987489875069
No 401
>PRK08694 consensus
Probab=92.94 E-value=0.14 Score=32.37 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 92999999999998288981663117989888999999999981
Q gi|254780217|r 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 16 G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
|-..-+..|.+....=+-.+-+++-|.||.||+++|+.+|..+-
T Consensus 200 Gi~TG~~~LD~~t~Gl~~G~LiVIaaRPsmGKTalalnia~~~a 243 (468)
T PRK08694 200 GVPTGFIDLDKKTSGLQPGDLIIVAGRPSMGKTAFSINIAEHVA 243 (468)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 15579688987644888784799961786537899999999999
No 402
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=92.94 E-value=0.14 Score=32.48 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999828898166311798988899999999998177
Q gi|254780217|r 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 21 ~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
-+.|...+..|. -+++.|+=|.|||+|++.+++.+-..
T Consensus 5 g~~ia~~l~~G~---vi~L~G~LGaGKTtfvr~i~~~lg~~ 42 (123)
T pfam02367 5 GKRLAQLLKAGD---VVLLSGDLGAGKTTFVRGLAKGLGIT 42 (123)
T ss_pred HHHHHHHCCCCC---EEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 999997689997---99998887788999999999985998
No 403
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.94 E-value=0.25 Score=30.39 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEECCCCCCCHHHHHHHHHHH
Q ss_conf 6631179898889999999999
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
-+.+.||+|.||+|+...++..
T Consensus 37 i~~ilGpnGaGKSTLl~~l~Gl 58 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999989995199999998577
No 404
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=92.92 E-value=0.096 Score=33.69 Aligned_cols=146 Identities=17% Similarity=0.215 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC---CCHHHCCCC--------------------
Q ss_conf 999999999982889816631179898889999999999817799886---431210126--------------------
Q gi|254780217|r 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK---APVRMCNPD-------------------- 75 (347)
Q Consensus 19 ~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~---~~~~~~~~~-------------------- 75 (347)
...+.+.=++..| .++=+-||+|+||+|+|+.+...-.|..+.-. ........+
T Consensus 344 ~~l~gi~F~~~aG---e~laIIGPSgSGKStLaR~~vG~W~~~~G~VRLDGadl~qWD~e~lG~~iGYLPQdvELF~GTv 420 (556)
T TIGR01842 344 PTLRGISFAIQAG---EALAIIGPSGSGKSTLARILVGIWPPASGSVRLDGADLKQWDRETLGKHIGYLPQDVELFSGTV 420 (556)
T ss_pred HHHCCCCEEECCC---CEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 4227862156377---4588874786525889878872101356533640334402375365880154798505076767
Q ss_pred ------------CCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCHHHHHHHHH-H
Q ss_conf ------------7886799996789875453001000101342123237887554431022-2111121035322055-4
Q gi|254780217|r 76 ------------PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL-TANTGYWRVIMIDPVD-G 141 (347)
Q Consensus 76 ------------~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~-~~~~~~~Ki~IId~ad-~ 141 (347)
+..=..-.-.+|.|.=+.-++.-+|...|..+...|=-| ..++.+ +++.|.=+++|+||.+ +
T Consensus 421 a~NIARF~en~d~~~iieAAklAGvHElIl~lP~GYDT~iG~~G~~LSGGQ----RQRIaLARAlyG~P~lvvLDEPNsN 496 (556)
T TIGR01842 421 AENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTDIGEGGATLSGGQ----RQRIALARALYGDPKLVVLDEPNSN 496 (556)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCHH----HHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 640244688788789999997603035751696885443137777786146----8999999987179837873288987
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCEEEEECCCC
Q ss_conf 24000145677766303-4341676504433
Q gi|254780217|r 142 MNRNAANALLKSLEEPP-QKVLFILISHASP 171 (347)
Q Consensus 142 ln~~AaNALLK~LEEPp-~~t~fiLit~~~~ 171 (347)
|-.+.--||.+=|-+-- .+..-++|||.|.
T Consensus 497 LD~~GE~AL~~Ai~~lK~rg~tvv~itHRp~ 527 (556)
T TIGR01842 497 LDEEGEQALANAIKALKARGITVVVITHRPS 527 (556)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf 6617899999999999867972899841068
No 405
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.89 E-value=0.11 Score=33.26 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=23.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 816631179898889999999999817
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
...+.+.|.+|+||+|.++.+|+.+-.
T Consensus 2 ~~~I~LiG~mGsGKstiGk~LA~~L~~ 28 (172)
T PRK03731 2 TQPLFLVGPRGCGKTTVGMALAQALGY 28 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 998899889999889999999998599
No 406
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=92.89 E-value=0.21 Score=31.04 Aligned_cols=164 Identities=17% Similarity=0.161 Sum_probs=84.5
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHH--CCC--
Q ss_conf 2889816631179898889999999999817799886431210126788679999678987545300100010--134--
Q gi|254780217|r 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK--TGK-- 105 (347)
Q Consensus 30 ~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k--~~~-- 105 (347)
..+.|| +|..|-+|.||++....+..+++-...+.. |...-.|+..-.......-.|---.++. +++ ..+
T Consensus 527 lak~~h-lli~G~tgsGKSv~lnt~i~Sll~~~~P~e--v~~~~iD~k~~~L~~~~~iPHl~~~v~t---d~~~k~~~al 600 (858)
T COG1674 527 LAKAGH-LLIAGATGSGKSVALNTMILSLLYTHSPEE--VRFYIIDPKMLELAAYDGLPHLGDPVVT---DEKEKAEKAL 600 (858)
T ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCHH--EEEEEECCCCCCCHHHCCCCCCCCCCCC---CCHHHHHHHH
T ss_conf 356888-788248886515589999999875189068--4999974787543333069855772324---7477899999
Q ss_pred --------CC-CCCCHHHHHHHHHHCCCC----C-CCCCCHHHHHHHHHHCCHHHHH----HHHHHH-HHCCCCCCEEEE
Q ss_conf --------21-232378875544310222----1-1112103532205542400014----567776-630343416765
Q gi|254780217|r 106 --------WR-TVITVDEIRRIRYFLSLT----A-NTGYWRVIMIDPVDGMNRNAAN----ALLKSL-EEPPQKVLFILI 166 (347)
Q Consensus 106 --------~~-~~I~vd~IR~l~~~~~~~----~-~~~~~Ki~IId~ad~ln~~AaN----ALLK~L-EEPp~~t~fiLi 166 (347)
.+ +.-+-..||.+..+=.+. + ..=++-|+|||+...|-..+.. ++-++. +-.-.....||.
T Consensus 601 ~~~~~eme~R~~l~~~~~vr~i~~yn~k~~~~~~~~~lP~iviiiDe~adlm~~~~k~ve~~i~rLa~~ara~GIHlila 680 (858)
T COG1674 601 AELVAEMERRYKLFSEKGVRNIEGYNEKIAGAIPDEELPYIVIIIDEYADLMMVAGKELEELIARLAQKGRAAGIHLILA 680 (858)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999999988885666277776542024555679808999444788861231769999999999787658269997
Q ss_pred ECCCCC-CCHHHHCEE-EEEECCCCCHHHHHHHHH
Q ss_conf 044335-730252036-988647999899999999
Q gi|254780217|r 167 SHASPT-ILSTIRSRC-LSIKFNSLSENNLYKALE 199 (347)
Q Consensus 167 t~~~~~-il~TI~SRc-~~i~f~~l~~~~~~~~L~ 199 (347)
|..|+. +.+.|+..- .++.|.--+..+.+-++.
T Consensus 681 tqRps~dVit~ikan~psrIaf~v~s~~dsr~il~ 715 (858)
T COG1674 681 TQRPSVDVITGIKANIPTRIALRLSSKIDSRLILG 715 (858)
T ss_pred CCCCCCCHHHHHHHCCCCCEEEEECCCCCEEEEEC
T ss_conf 48999504088885387525665168765256624
No 407
>PRK06851 hypothetical protein; Provisional
Probab=92.84 E-value=0.24 Score=30.49 Aligned_cols=161 Identities=17% Similarity=0.203 Sum_probs=86.7
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHH-------HHHCCCCCCEE----------
Q ss_conf 8898166311798988899999999998177998864312101267886799-------99678987545----------
Q gi|254780217|r 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK-------QMASHALHDFL---------- 93 (347)
Q Consensus 31 ~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~-------~i~~~~hpd~~---------- 93 (347)
+.+-.-+++-|.||+||+++-..++...+... -...+..|++|+.+-+-- .+..|+-|.++
T Consensus 28 ~~~~ri~ilKGGpGtGKStlmK~ig~~~~~~G--ydVE~~hcssD~~SlDGvvip~lk~aivDGTaPHvvdP~~PGavee 105 (368)
T PRK06851 28 GDANRIFILKGGPGTGKSTLMKKIGEEFLEKG--YDVEFLHCSSDNDSLDGVIIPELKIAILDGTAPHVVDPKAPGAVEE 105 (368)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCEEE
T ss_conf 65127999968999778999999999999689--8379997589988643599757877997488876658999984347
Q ss_pred --EECCCCHHHCCCCCCCCCHHHHHHHHHHCCC------------CCCCCCCHHHHHHHHHHCCHHHHH--------HHH
Q ss_conf --3001000101342123237887554431022------------211112103532205542400014--------567
Q gi|254780217|r 94 --YLSYSLNPKTGKWRTVITVDEIRRIRYFLSL------------TANTGYWRVIMIDPVDGMNRNAAN--------ALL 151 (347)
Q Consensus 94 --~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~------------~~~~~~~Ki~IId~ad~ln~~AaN--------ALL 151 (347)
-+.-.||+..-+. ..++|-.+.+.... .+....|.-+.+ +.|+.+.+| .|+
T Consensus 106 iInLg~~~d~~~L~~----~k~eI~~~~~~i~~~~~rAY~~l~~A~~i~ddwe~~~~---~~md~~k~n~~~~~l~~~lf 178 (368)
T PRK06851 106 IINLGDYWDEDKLRK----HKEEIIKINEEISRCFQRAYAYLNEALAIHDEWEKIYI---EAMDFEKANELTDELIQELF 178 (368)
T ss_pred EEEHHHHHCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHH
T ss_conf 977789718676788----79999999999999999999999999999999999999---84799999999999999985
Q ss_pred HH---HHHCCCCCCEEEEECCCCCC---CHHHHCEEEEEEC----CCCCHHHHHHHHHH
Q ss_conf 77---66303434167650443357---3025203698864----79998999999997
Q gi|254780217|r 152 KS---LEEPPQKVLFILISHASPTI---LSTIRSRCLSIKF----NSLSENNLYKALEQ 200 (347)
Q Consensus 152 K~---LEEPp~~t~fiLit~~~~~i---l~TI~SRc~~i~f----~~l~~~~~~~~L~~ 200 (347)
+- -|+|+.-...++.+-.|..+ .+||..=|.++.| ..-..+.+.+.+-+
T Consensus 179 ~~~~~~~~~g~~rhlF~~A~TP~G~v~~i~~l~~~~~~~y~ikG~pGtGKstlL~~i~~ 237 (368)
T PRK06851 179 KGAPSKDSKGKVRHLFLGAITPKGAVDHVPSLTEGVKNRYFLKGRPGTGKSTMLKKVAK 237 (368)
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 45633477741011322357999645147878606786999818999877999999999
No 408
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.84 E-value=0.38 Score=28.92 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=65.6
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf 99999982889816631179898889999999999817799886431210126788679999678987545300100010
Q gi|254780217|r 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK 102 (347)
Q Consensus 23 ~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k 102 (347)
-|.+.-.+.+-+- +++.|++|+||+++..++...-. ....|.-... +..-...++- +. -||-.
T Consensus 4 ~~~~~k~~~~~~K-i~ilG~~~sGKTsll~~l~~~~~----~~~~pT~g~~----------~~~v~~~~~~-~~-lwD~~ 66 (173)
T cd04155 4 LLRKLRKSSEEPR-ILILGLDNAGKTTILKQLASEDI----SHITPTQGFN----------IKTVQSDGFK-LN-VWDIG 66 (173)
T ss_pred HHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHCCCC----CCCCCCCCEE----------EEEEEECCEE-EE-EEECC
T ss_conf 8877655687758-99997999988999999856998----6606811323----------7999989999-99-98558
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-HHHHHHHHHHHHCC-CCCCEEEEECCCCCCCHHHHCE
Q ss_conf 134212323788755443102221111210353220554240-00145677766303-4341676504433573025203
Q gi|254780217|r 103 TGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-NAANALLKSLEEPP-QKVLFILISHASPTILSTIRSR 180 (347)
Q Consensus 103 ~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-~AaNALLK~LEEPp-~~t~fiLit~~~~~il~TI~SR 180 (347)
+ -+..|.+....... . .-=|+++|..|.-+. ++..-+-+.|.++. ++..++++.|..+ ++
T Consensus 67 G--------~~~~~~~~~~y~~~-a--~~iI~VvD~td~~~~~~~~~~l~~~l~~~~~~~~PiLiv~NK~D-l~------ 128 (173)
T cd04155 67 G--------QRAIRPYWRNYFEN-T--DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQD-LA------ 128 (173)
T ss_pred C--------CHHHHHHHHHHCCC-C--CEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-CC------
T ss_conf 7--------51012689976555-6--37999996675688999999999997413006983899997666-77------
Q ss_pred EEEEECCCCCHHHHHHHHH
Q ss_conf 6988647999899999999
Q gi|254780217|r 181 CLSIKFNSLSENNLYKALE 199 (347)
Q Consensus 181 c~~i~f~~l~~~~~~~~L~ 199 (347)
...+.+++.+.+.
T Consensus 129 ------~a~~~~eI~~~l~ 141 (173)
T cd04155 129 ------TAAPAEEIAEALN 141 (173)
T ss_pred ------CCCCHHHHHHHHC
T ss_conf ------7899999999858
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.84 E-value=0.32 Score=29.49 Aligned_cols=134 Identities=14% Similarity=0.064 Sum_probs=63.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
++.++++||...||+++-+.++-.++-..-....||..+.... .|-++......+ .-....+--.-
T Consensus 30 ~~i~iiTGpN~sGKSt~lk~i~l~~~laq~G~~vpa~~~~~~~-------------~d~i~t~i~~~d-~~~~~~StF~~ 95 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPI-------------VDCILARVGASD-SQLKGVSTFMA 95 (222)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEC-------------CCEEEEEECCCC-CCCCCHHHHHH
T ss_conf 2599998999887189999999999999868754632389952-------------764999988997-10033528999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----HHHHHHHHHH-HHCCCCCCEEEEECCCCC-CCHHHHCEEEEEEC
Q ss_conf 8755443102221111210353220554240-----0014567776-630343416765044335-73025203698864
Q gi|254780217|r 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-----NAANALLKSL-EEPPQKVLFILISHASPT-ILSTIRSRCLSIKF 186 (347)
Q Consensus 114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----~AaNALLK~L-EEPp~~t~fiLit~~~~~-il~TI~SRc~~i~f 186 (347)
+++++..-+... .++-.++|||.-+=|. +.+-|+|..| +. .++..+++||..+- -+..-..+++.++|
T Consensus 96 e~~~~~~il~~~---~~~sLvliDElg~GT~~~eg~aia~aile~L~~~--~~~~~i~tTH~~~L~~l~~~~~~v~~~~~ 170 (222)
T cd03285 96 EMLETAAILKSA---TENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQ--IKCFCLFATHFHELTALADEVPNVKNLHV 170 (222)
T ss_pred HHHHHHHHHHHC---CCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCEEEEEEECHHHHHHHHCCCCCEEEEE
T ss_conf 999999999847---6773200023468988226799999999999850--68509998200779998640855135789
No 410
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=92.77 E-value=0.096 Score=33.71 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=22.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 166311798988899999999998177
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
.-+=+.||||+||+|+|..+++.|...
T Consensus 35 ~lIgIaG~pGSGKSTlA~~l~~~L~~~ 61 (230)
T PRK09270 35 TVVGIAGPPGAGKSTLAETLWEALSQQ 61 (230)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 899998999889999999999998623
No 411
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.75 E-value=0.11 Score=33.19 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 631179898889999999999817
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
+.|.|++|+||+|.++.+|+.+-.
T Consensus 7 I~liG~~GsGKTtvgk~LA~~L~~ 30 (175)
T PRK00131 7 IVLIGMMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 898889999989999999999596
No 412
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=92.67 E-value=0.32 Score=29.52 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999999999982-889816631179898889999999999817
Q gi|254780217|r 19 DIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 19 ~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
.+.+.|.+.+.. || .|-+=|+|+||+||+|+.-+|...+--
T Consensus 23 ~a~~ll~~i~p~~Gn-A~~vG~TG~PGaGKSTl~~~l~~~lrR 64 (333)
T TIGR00750 23 LAKELLERILPKTGN-AHVVGITGVPGAGKSTLVEKLIMELRR 64 (333)
T ss_pred HHHHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999999986243279-078766468888577799999899976
No 413
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=92.67 E-value=0.33 Score=29.34 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 210353220554240001456777663034
Q gi|254780217|r 130 YWRVIMIDPVDGMNRNAANALLKSLEEPPQ 159 (347)
Q Consensus 130 ~~Ki~IId~ad~ln~~AaNALLK~LEEPp~ 159 (347)
..+|+|+-+.|.|...|+|-++|.+.+-.+
T Consensus 143 A~eV~IVts~E~~AL~aannI~k~i~~~~~ 172 (274)
T PRK13235 143 AEEIYIVCSGEMMAMYAANNICKGILKYAD 172 (274)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf 878999916836899999999999999974
No 414
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.66 E-value=0.056 Score=35.56 Aligned_cols=150 Identities=16% Similarity=0.134 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHCCCCC----------EEEEECCCCCCCHHHHHHHHH-HHHHCCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 299999999999828898----------166311798988899999999-998177998864312101267886799996
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMH----------HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMA 85 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~----------ha~Lf~Gp~GiGK~~~A~~~A-~~llc~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (347)
-+..|..+...+.. ++| -.+-|.||-|+||||+.-.+| ++.+.+... ..+..+-|.+ +|
T Consensus 322 ~~~a~~~ll~~La~-~Lpv~~~d~~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~---~valit~Dty-----Ri- 391 (557)
T PRK12727 322 LHRGRGLMLGLLSK-RLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPR---DVALVTTDTQ-----RV- 391 (557)
T ss_pred HHHHHHHHHHHHHH-HCCCCCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC---EEEEEECCCC-----CH-
T ss_conf 88999999999996-28777775154076478743777673117999999999973998---1899972664-----08-
Q ss_pred CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHH-HHHHHHHHHHH-CCCCCCE
Q ss_conf 789875453001000101342123237887554431022211112103532205542400-01456777663-0343416
Q gi|254780217|r 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN-AANALLKSLEE-PPQKVLF 163 (347)
Q Consensus 86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~-AaNALLK~LEE-Pp~~t~f 163 (347)
|.|--+..+.+..+ -...-.-.-++.+.+... ...+++|+||-+-.=..+ ....-|+.|.. +.-.+++
T Consensus 392 -ga~eQL~~y~~ilg---vpv~~~~~~~~l~~~l~~------l~~~~lvliDTaG~~~rd~~~~~~~~~l~~~~~~~~~L 461 (557)
T PRK12727 392 -GGREQLHSYGRQLG---IAVHEADSAESLLDLLER------LRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLL 461 (557)
T ss_pred -HHHHHHHHHHHHHC---CEEEEECCHHHHHHHHHH------HCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf -79999999999839---757982899999999998------36999899949998846999999999875147763599
Q ss_pred EEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 76504433573025203698864
Q gi|254780217|r 164 ILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 164 iLit~~~~~il~TI~SRc~~i~f 186 (347)
+|.++.....+..|..+-..+.+
T Consensus 462 vl~a~~~~~~l~~~~~~~~~~~~ 484 (557)
T PRK12727 462 VLPANAHFSDLDEVVRRFAHAKP 484 (557)
T ss_pred EEECCCCHHHHHHHHHHHCCCCC
T ss_conf 99688998999999998537998
No 415
>PRK07773 replicative DNA helicase; Validated
Probab=92.66 E-value=0.16 Score=31.81 Aligned_cols=106 Identities=15% Similarity=0.193 Sum_probs=56.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC--CHHHHHHHCCCCCCEEEECCC------CHH---H
Q ss_conf 81663117989888999999999981779988643121012678--867999967898754530010------001---0
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC--SPFVKQMASHALHDFLYLSYS------LNP---K 102 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~--~~~~~~i~~~~hpd~~~i~~~------~~~---k 102 (347)
.+-+++-|.||.||+++|+.+|+.+-...+ .|...++-+.. .-..|.+.+.+.-|..-+... |.. .
T Consensus 203 ~~l~i~a~rp~~GKt~~~~~~a~~~a~~~~---~~v~~FSLEMs~~ql~~Rlls~~~~i~~~~lr~G~l~~~~~~~~~~a 279 (868)
T PRK07773 203 GQMIIVAARPGVGKSTLGLDFARSCSIRHR---LASVIFSLEMSKEEIVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARR 279 (868)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHH
T ss_conf 767999828977777899999999998659---96589730567889999999876078776641688898999999999
Q ss_pred C---------CCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHH
Q ss_conf 1---------342123237887554431022211112103532205542400
Q gi|254780217|r 103 T---------GKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN 145 (347)
Q Consensus 103 ~---------~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~ 145 (347)
. --+...|+|.+||.-.+++. ..++-.++|||....|+..
T Consensus 280 ~~~l~~~pl~IdDtp~isi~eirakaRrlk---~~~~l~lIvvDYLQLm~~~ 328 (868)
T PRK07773 280 MSEISEAPLFIDDSPNLTMMEIRSKARRLQ---QKANLKLIVVDYLQLMTSG 328 (868)
T ss_pred HHHHHHCCEEEECCCCCCHHHHHHHHHHHH---HCCCCCEEEEECHHHCCCC
T ss_conf 999861988884799999999999999986---5269988999615524789
No 416
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.63 E-value=0.12 Score=32.93 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 63117989888999999999981
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
++++|-||+||+|+|..+++.+-
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKKLS 24 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 78967899989999999999999
No 417
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=92.60 E-value=0.36 Score=29.12 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHH-CCCCC
Q ss_conf 09299999999999---828898166311798988899999999998177998864312101267886799996-78987
Q gi|254780217|r 15 FGHEDIEKFLSQYY---CSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA-SHALH 90 (347)
Q Consensus 15 ~G~~~~~~~L~~~~---~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~-~~~hp 90 (347)
.|.+...+.+.+-. ...++| .++.|.+|+||..+|++|-+ ... ..+|....+ |-.|- ....-
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~p--vll~GEtGtGKe~laraiH~----~s~-~~gpfvAvN-------CaAip~~lies 381 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLP--VLLQGETGTGKEVLARAIHQ----NSE-AAGPFVAVN-------CAAIPEALIES 381 (606)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCC--EEECCCCCHHHHHHHHHHHH----CCC-CCCCEEEEE-------ECCCHHHHHHH
T ss_conf 45578899999999887624787--68538765568999999985----365-569837998-------50344776467
Q ss_pred CEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 545300100010134212323788755443102221111210353220554240001456777663
Q gi|254780217|r 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 91 d~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
-++ .+.....++..++ ..+. ......-...++|++.+|-.+.|-+||..|+|
T Consensus 382 ELF--Gy~~GafTga~~k--------G~~g----~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e 433 (606)
T COG3284 382 ELF--GYVAGAFTGARRK--------GYKG----KLEQADGGTLFLDEIGDMPLALQSRLLRVLQE 433 (606)
T ss_pred HHH--CCCCCCCCCCHHC--------CCCC----CCEECCCCCCHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 774--4576564330010--------6655----41015787608987611418999999999861
No 418
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.59 E-value=0.094 Score=33.77 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.2
Q ss_pred EEECCCCCCCHHHHHHHHHH
Q ss_conf 63117989888999999999
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAG 56 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~ 56 (347)
++++|.||+||+|++..++.
T Consensus 3 I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 79937999866879999998
No 419
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=92.54 E-value=0.065 Score=35.07 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=26.3
Q ss_pred CHHHHCCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 5656109299999999999828-898166311798988899999999
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSG-RMHHALLFEGEQGIGKATLGFRYA 55 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~-~l~ha~Lf~Gp~GiGK~~~A~~~A 55 (347)
+.+..+|+....++...-++-. .-.=-.|++||+|+||||+=--+.
T Consensus 6 ~LnHyyG~G~~rkQvL~di~L~i~~GEiViltGPSGSGKTTLLtLiG 52 (220)
T TIGR02982 6 NLNHYYGEGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIG 52 (220)
T ss_pred CCCCEECCCCCCCEEECCCCEEECCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 34411146874210012763177176479843788984688999887
No 420
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=92.53 E-value=0.21 Score=31.02 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHH-----CCCCC-
Q ss_conf 299999999999828898166311798988899999999998177998864312101267886799996-----78987-
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA-----SHALH- 90 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~hp- 90 (347)
|+++.+.+.+.+.+ +..-++.-|.|.|||.+|...++.+.-. + ....+....+.+.. ....+
T Consensus 41 Q~~al~a~~~~~~~---~~~gvivlpTGaGKT~va~~~~~~~~~~-------~--Lvlv~~~~L~~Qw~~~~~~~~~~~~ 108 (442)
T COG1061 41 QEEALDALVKNRRT---ERRGVIVLPTGAGKTVVAAEAIAELKRS-------T--LVLVPTKELLDQWAEALKKFLLLND 108 (442)
T ss_pred HHHHHHHHHHHCCC---CCCEEEEECCCCCHHHHHHHHHHHHCCC-------E--EEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999962225---7867999679998899999999982698-------8--9997829999999999997348867
Q ss_pred CEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 545300100010134212323788755443102221111-2103532205542400014567776630343416765044
Q gi|254780217|r 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG-YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 (347)
Q Consensus 91 d~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~-~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~ 169 (347)
+.-.+.. +.+.-.. ..|.|-.+--+...-.+..+.+ .+-.+|+|+||.+.......++..+..|-. ++=|+++-
T Consensus 109 ~~g~~~~--~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~--~LGLTATp 183 (442)
T COG1061 109 EIGIYGG--GEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP--RLGLTATP 183 (442)
T ss_pred CCCEECC--CCCCCCC-CCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCE--EEEEECCC
T ss_conf 6603368--7233577-74899983897641555540356667599975245784779999997510310--46771487
Q ss_pred C
Q ss_conf 3
Q gi|254780217|r 170 S 170 (347)
Q Consensus 170 ~ 170 (347)
+
T Consensus 184 ~ 184 (442)
T COG1061 184 E 184 (442)
T ss_pred C
T ss_conf 2
No 421
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=92.50 E-value=0.19 Score=31.23 Aligned_cols=143 Identities=16% Similarity=0.168 Sum_probs=87.5
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC---C------CCCCHHHCCCC-CCCHHHHHHHCCCCCCEE
Q ss_conf 9999982889816631179898889999999999817799---8------86431210126-788679999678987545
Q gi|254780217|r 24 LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD---F------SKAPVRMCNPD-PCSPFVKQMASHALHDFL 93 (347)
Q Consensus 24 L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~---~------~~~~~~~~~~~-~~~~~~~~i~~~~hpd~~ 93 (347)
+.=.++.|+. .-+.||+|.||+|+-..++..+--..+ - ++.|......+ .-.+.+- .-+.||-++
T Consensus 371 ~sf~~~pG~~---vAl~G~SGaGKSTLL~lLLGf~~P~~G~i~v~~~Gg~~G~~L~~~~~~W~W~~~ia--Wv~Q~P~l~ 445 (570)
T TIGR02857 371 VSFTVEPGER---VALVGPSGAGKSTLLNLLLGFVEPTEGAIVVERDGGINGVPLAEADADWSWRDQIA--WVPQHPFLF 445 (570)
T ss_pred CCEEECCCCE---EEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCEE--EECCCCCCC
T ss_conf 5416638704---88862799978899999971576446468874488853976421131022554134--305666013
Q ss_pred EECC----------------------------------CCHHHCCCCCCCCCHHHHHHH-HHHCCCCCCCCCCHHHHHHH
Q ss_conf 3001----------------------------------000101342123237887554-43102221111210353220
Q gi|254780217|r 94 YLSY----------------------------------SLNPKTGKWRTVITVDEIRRI-RYFLSLTANTGYWRVIMIDP 138 (347)
Q Consensus 94 ~i~~----------------------------------~~~~k~~~~~~~I~vd~IR~l-~~~~~~~~~~~~~Ki~IId~ 138 (347)
.=+- -++.+-|..+.-.|.-|-+.+ .-+.-+++... ..|+++||
T Consensus 446 ~gtiaeNi~La~~~A~~~~~~~A~~~agl~~~~~~LP~Gl~t~~Ge~G~GLSGGq~QRlALARafl~~~~a-~~llLLDE 524 (570)
T TIGR02857 446 AGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDATA-APLLLLDE 524 (570)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHC-CCCEEEEC
T ss_conf 64799999734899998999999999728999997111313435888884779999999999996061111-76035407
Q ss_pred HH-HCCHHHHHHHHHHHHHCC-CCCCEEEEECCCCC
Q ss_conf 55-424000145677766303-43416765044335
Q gi|254780217|r 139 VD-GMNRNAANALLKSLEEPP-QKVLFILISHASPT 172 (347)
Q Consensus 139 ad-~ln~~AaNALLK~LEEPp-~~t~fiLit~~~~~ 172 (347)
.= .+-.++.+.+.+.+++-- ++-.-+++||++.-
T Consensus 525 PTAhLD~~tEa~v~~~~~~l~A~grtvl~v~Hr~~~ 560 (570)
T TIGR02857 525 PTAHLDAETEAEVLEALRALAAQGRTVLLVTHRLAL 560 (570)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 764321899999999999997379889999766899
No 422
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=92.50 E-value=0.36 Score=29.12 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=36.1
Q ss_pred CCCCCCHHHHCCHHHHHHH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5558756561092999999--99999828898166311798988899999999998177
Q gi|254780217|r 5 AFDPVYNQRLFGHEDIEKF--LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 5 ~~~p~~~~~i~G~~~~~~~--L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
+|+-+.-.+.--|--++.. ...... .+-+++++++|..|.|||..+..+.++|...
T Consensus 62 ~y~~~~~~~~~PHiyaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTes~K~il~yL~~~ 119 (677)
T smart00242 62 KYRGKSRGELPPHVFAIADNAYRNMLN-DKENQSIIISGESGAGKTENTKKIMQYLAAV 119 (677)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 866898678998399999999999986-3999279996889888779999999999997
No 423
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.49 E-value=0.42 Score=28.55 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=34.4
Q ss_pred CCCCHHHHCCH----HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 58756561092----999999999998288981663117989888999999999981
Q gi|254780217|r 7 DPVYNQRLFGH----EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 7 ~p~~~~~i~G~----~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
++-+.++++.. +...+.|..++. .+.. +++.|+-|.||||+..++...+.
T Consensus 116 ~~~tl~dlv~~g~~t~~~~~~L~~aV~-~r~n--ilVsGgTGSGKTTllnaL~~~i~ 169 (323)
T PRK13833 116 RLIPLDDYVRSKVMTEAQASTIRSAIS-SRLN--IVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCCCHHHHHHCCCCCHHHHHHHHHHHH-CCCC--EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999999998769999999999999998-1896--89991777756899999998640
No 424
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.47 E-value=0.12 Score=33.01 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.5
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 3117989888999999999981779
Q gi|254780217|r 38 LFEGEQGIGKATLGFRYAGHVLQNP 62 (347)
Q Consensus 38 Lf~Gp~GiGK~~~A~~~A~~llc~~ 62 (347)
++.|.||.||+|+|+++..++.+..
T Consensus 3 VLcGLPaAGKTTLar~L~~~l~~~~ 27 (340)
T TIGR03575 3 VLCGLPAAGKSTLARSLSATLRRER 27 (340)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 4326987873689999999986444
No 425
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.46 E-value=0.32 Score=29.53 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=28.8
Q ss_pred HHHHHHHHHHCCCCCE----------EEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999999998288981----------66311798988899999999998177
Q gi|254780217|r 20 IEKFLSQYYCSGRMHH----------ALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 20 ~~~~L~~~~~~~~l~h----------a~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
........+-.++++- -+++.||.|+||||++=.+|.++...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~ 233 (407)
T PRK12726 182 DITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQ 233 (407)
T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 4068999975389770320230369089998999897899999999999977
No 426
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.44 E-value=0.62 Score=27.19 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.9
Q ss_pred EEECCCCCCCHHHHHHHHHHH
Q ss_conf 631179898889999999999
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
.-+.||.|+||+|+.+.++..
T Consensus 30 v~i~GpSGsGKSTLl~~i~gl 50 (214)
T cd03292 30 VFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999979995399999999629
No 427
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=92.42 E-value=0.4 Score=28.74 Aligned_cols=56 Identities=13% Similarity=0.030 Sum_probs=36.1
Q ss_pred CCCCCCHHHHCCHHHHHHH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5558756561092999999--99999828898166311798988899999999998177
Q gi|254780217|r 5 AFDPVYNQRLFGHEDIEKF--LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 5 ~~~p~~~~~i~G~~~~~~~--L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
+|+.+.-.++--|--++.. ..+... .+-+++++++|..|.|||..+..+.++|..-
T Consensus 56 ~Y~~~~~~~~pPHifaiA~~Ay~~m~~-~~~~QsIiiSGESGaGKTe~~K~il~yL~~~ 113 (671)
T cd01381 56 LYKNKSIGELPPHIFAISDNAYTNMQR-EKKNQCIIISGESGAGKTESTKLILQYLAAI 113 (671)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 871898678998199999999999997-2999679995799888799999999999987
No 428
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.41 E-value=0.17 Score=31.62 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=27.1
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8898166311798988899999999998177
Q gi|254780217|r 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 31 ~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
..-|+.+||.|-.|+||||+.=.+|.++..+
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~ 166 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQ 166 (340)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 8986799999348886371799999999978
No 429
>PRK13946 shikimate kinase; Provisional
Probab=92.38 E-value=0.22 Score=30.75 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=26.8
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999998288981663117989888999999999981
Q gi|254780217|r 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 22 ~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
+.+...+...+ +.|.|.+|+||+|.++.+|+.|-
T Consensus 12 ~~~~~~l~kkn----IvLIG~mGsGKStvGk~LA~~L~ 45 (195)
T PRK13946 12 EQIRAALGKRT----VVLVGLMGAGKSTVGRRLATMLG 45 (195)
T ss_pred HHHHHHHCCCC----EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99999858995----89989999988999999999979
No 430
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.37 E-value=0.32 Score=29.46 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=29.1
Q ss_pred CHHHHHHHHHH-CCHHHHHHHHHHHHHCCC-CCCEEEEECCCCCC
Q ss_conf 10353220554-240001456777663034-34167650443357
Q gi|254780217|r 131 WRVIMIDPVDG-MNRNAANALLKSLEEPPQ-KVLFILISHASPTI 173 (347)
Q Consensus 131 ~Ki~IId~ad~-ln~~AaNALLK~LEEPp~-~t~fiLit~~~~~i 173 (347)
--++|+||+|. |...-...+...|.|-.+ .+-||++|++...+
T Consensus 117 ~p~~iLDEvdAaLD~~N~~r~~~~i~el~~~~sQfIiITH~~~~m 161 (178)
T cd03239 117 SPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF 161 (178)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 966998276554798899999999999973899899998689999
No 431
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.29 E-value=0.28 Score=29.97 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999828898166311798988899999999998
Q gi|254780217|r 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 18 ~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
.+....|..+...++ .+++.|.-|+||||++.++...+
T Consensus 149 ~~~~~fL~~aV~~r~---NIlIsGgTGSGKTTllnALl~~I 186 (343)
T PRK13851 149 GDLEAFLHACVVGRL---TMLLCGPTGSGKTTMSKTLISAI 186 (343)
T ss_pred HHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHCC
T ss_conf 779999999997698---89998889861999999999628
No 432
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.26 E-value=0.12 Score=33.02 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEECCCCCCCHHHHHHHHHHHH
Q ss_conf 6311798988899999999998
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+-+.||||+||+|.|..+|..+
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEECCCCCCCCHHHHHHHHHHH
T ss_conf 9961799997027999999982
No 433
>PRK06696 uridine kinase; Validated
Probab=92.22 E-value=0.4 Score=28.68 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHCCCCCE--EEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999999999998288981--6631179898889999999999817
Q gi|254780217|r 18 EDIEKFLSQYYCSGRMHH--ALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 18 ~~~~~~L~~~~~~~~l~h--a~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
.+.+..|...+..-+..+ -+=+-|++|+||+|+|..++..|-.
T Consensus 8 ~~~~~~~~~~i~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~ 52 (227)
T PRK06696 8 KQVVKEIANHILTLNLTRPLRVAIDGITASGKTTFANELAEEIKK 52 (227)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 789999999998359998689997789987879999999999974
No 434
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=92.16 E-value=0.46 Score=28.24 Aligned_cols=55 Identities=15% Similarity=0.038 Sum_probs=34.5
Q ss_pred CCCCCCHHHHCCHHHHHHH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 5558756561092999999--9999982889816631179898889999999999817
Q gi|254780217|r 5 AFDPVYNQRLFGHEDIEKF--LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 5 ~~~p~~~~~i~G~~~~~~~--L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
.|+-+...++--|--++.. ...... .+-+++++++|..|.|||..+..+.++|..
T Consensus 58 ~y~~~~~~~~pPHiyaiA~~Ay~~m~~-~~~nQsIiiSGESGAGKTes~K~il~yL~~ 114 (674)
T cd01384 58 QYKGAALGELSPHVFAIADAAYRAMIN-EGKSQSILVSGESGAGKTETTKMLMRYLAY 114 (674)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 866898578999699999999999997-389966999558988889999999999999
No 435
>pfam00406 ADK Adenylate kinase.
Probab=92.08 E-value=0.29 Score=29.79 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=18.0
Q ss_pred ECCCCCCCHHHHHHHHHHHH
Q ss_conf 11798988899999999998
Q gi|254780217|r 39 FEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 39 f~Gp~GiGK~~~A~~~A~~l 58 (347)
|-||||+||.|.|..+|+..
T Consensus 1 i~G~PGsGKgTqa~~La~~~ 20 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKY 20 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHH
T ss_conf 91889898599999999985
No 436
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=92.07 E-value=0.58 Score=27.41 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 98166311798988899999999998
Q gi|254780217|r 33 MHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 33 l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
-.|..+++|+.|+||+++++.+.=.+
T Consensus 88 ~g~~~~~~gdsg~GKttllL~l~Ial 113 (402)
T COG3598 88 KGYVSILYGDSGVGKTTLLLYLCIAL 113 (402)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 17058984488623768999999999
No 437
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.06 E-value=0.17 Score=31.78 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=62.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH-HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCH
Q ss_conf 81663117989888999999999981779988643121012678867-99996789875453001000101342123237
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF-VKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~-~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~v 112 (347)
-+.+-|.||-|+||+|+.=.+|..+.-. ....+.-+.|..+-. .-++.. -.+++-++. .-.-.-
T Consensus 241 ~q~IALVGPTGVGKTTTIAKLAArf~~~----~KkVALITtDTYRIGAVEQLKT--YAeIMgVPV---------~VV~dp 305 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGK----KKTVGFITTDHSRIGTVQQLQD--YVKTIGFEV---------IAVRDE 305 (436)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCC----CCEEEEEECCCCHHHHHHHHHH--HHHHHCCCE---------EEECCH
T ss_conf 7179998999988899999999998616----9808999806634769999999--999849943---------996888
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 88755443102221111210353220554240--0014567776630-34341676504433573025203698864
Q gi|254780217|r 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEP-PQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 113 d~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEP-p~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
++.+.....+. ..+++.+++||-|-+=-. ....-|...++.- |..+++.|.++...+-+.-|..|-..+.+
T Consensus 306 ~eL~~AL~~lk---dka~~DLILIDTAGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~l~i 379 (436)
T PRK11889 306 AAMTRALTYFK---EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHI 379 (436)
T ss_pred HHHHHHHHHHH---HCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 99999999876---336888899929898846899999999998512777169999788998999999997257998
No 438
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=92.02 E-value=0.42 Score=28.51 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=26.7
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 889816631179898889999999999817
Q gi|254780217|r 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 31 ~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
.+-+++++++|..|.|||..+..+.++|..
T Consensus 83 ~~~~QsIiisGESGaGKTes~K~il~yL~~ 112 (679)
T cd00124 83 DRRNQSIIISGESGAGKTENTKLIMKYLAS 112 (679)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 399967999678988888999999999998
No 439
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.00 E-value=0.2 Score=31.15 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 81663117989888999999999981
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
+..+-|+|.+|.||+|+|..+.+.|-
T Consensus 4 g~viWltGlsgSGKTTia~~l~~~L~ 29 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTISHALAEKLR 29 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 88999889899999999999999999
No 440
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=91.97 E-value=0.26 Score=30.18 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=58.5
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCH--HH------------
Q ss_conf 6311798988899999999998177998864312101267886799996789875453001000--10------------
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLN--PK------------ 102 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~--~k------------ 102 (347)
+-+||.-||||+|++-.++.+|=.... ..---.| |+.+.+...+.....|+++.+-+..+ .+
T Consensus 3 iaiyGKGGIGKSTttaNl~aaLA~~G~--kVl~Igc--Dpk~Dst~~L~g~~~~tvld~l~~~~~~~~~~~~~d~v~~g~ 78 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGK--KVLQIGC--DPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGY 78 (267)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC--EEEEECC--CCCHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCHHHHHHCCC
T ss_conf 999779965787789999999998799--5999778--995155675269886839999986088666414778753076
Q ss_pred -------CCCCCCCC-----CH-HHHHHHHH-----HC---------------CCCCCCCCCHHHHHHHHHHCCHHHHHH
Q ss_conf -------13421232-----37-88755443-----10---------------222111121035322055424000145
Q gi|254780217|r 103 -------TGKWRTVI-----TV-DEIRRIRY-----FL---------------SLTANTGYWRVIMIDPVDGMNRNAANA 149 (347)
Q Consensus 103 -------~~~~~~~I-----~v-d~IR~l~~-----~~---------------~~~~~~~~~Ki~IId~ad~ln~~AaNA 149 (347)
.+.....+ .| ..+.-+.+ .+ ...|....-+++|+-..|.|+.-|||-
T Consensus 79 ~gv~cvEaGgP~pg~Gcagrgi~~~~~lL~~l~~~~~~D~Vl~DvlgdVvcgGFa~pi~~Ad~~~iVTs~e~~sl~aAn~ 158 (267)
T cd02032 79 GGVDCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGGFAAPLNYADYALIVTDNDFDSIFAANR 158 (267)
T ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 78457665899999887764048999999871664347789995366544566567610068899995671878999999
Q ss_pred HHHHHHHC
Q ss_conf 67776630
Q gi|254780217|r 150 LLKSLEEP 157 (347)
Q Consensus 150 LLK~LEEP 157 (347)
+.+.+++-
T Consensus 159 I~~~i~~~ 166 (267)
T cd02032 159 IAAAVREK 166 (267)
T ss_pred HHHHHHHH
T ss_conf 99999997
No 441
>pfam00063 Myosin_head Myosin head (motor domain).
Probab=91.89 E-value=0.45 Score=28.29 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=34.8
Q ss_pred CCCCCCHHHHCCHHHHHHH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 5558756561092999999--9999982889816631179898889999999999817
Q gi|254780217|r 5 AFDPVYNQRLFGHEDIEKF--LSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 5 ~~~p~~~~~i~G~~~~~~~--L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
+|+.+.-.++--|--++.. ..+. ...+-+++++++|..|.|||..+..+.++|..
T Consensus 55 ~Y~~~~~~~lpPHiyaiA~~Ay~~m-~~~~~~QsIiiSGESGAGKTes~K~il~yL~~ 111 (679)
T pfam00063 55 EYRGKRRGELPPHIFALADRAYRHM-LRDKENQCIVISGESGAGKTENTKKLMQYLAS 111 (679)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8658985789984899999999999-97089827999678868889999999999998
No 442
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.86 E-value=0.17 Score=31.72 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.3
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 631179898889999999999817
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
+.+.|.+|+||+++++.+|+.+-.
T Consensus 2 I~LiG~~G~GKstigk~la~~l~~ 25 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 899889999889999999999798
No 443
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.80 E-value=0.31 Score=29.54 Aligned_cols=130 Identities=19% Similarity=0.161 Sum_probs=62.6
Q ss_pred HHHHHHCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC-CCCHHHHHHHCCCCCCE-EEECCCC
Q ss_conf 9999982889816--631179898889999999999817799886431210126-78867999967898754-5300100
Q gi|254780217|r 24 LSQYYCSGRMHHA--LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD-PCSPFVKQMASHALHDF-LYLSYSL 99 (347)
Q Consensus 24 L~~~~~~~~l~ha--~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~-~~~~~~~~i~~~~hpd~-~~i~~~~ 99 (347)
|..++--|=+|-. .-|+||+++||+++|+++++.-.. . ++.|--...+ ..++..- -.-|.-+|= +++.+
T Consensus 43 lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk-~---gg~~~~iDaE~a~d~~~a-~~lGVD~~~l~~~qp-- 115 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK-L---GGTVAFIDAEHALDPVYA-KKLGVDLDNLLISQP-- 115 (325)
T ss_pred HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-C---CCEEEEEEHHHCCCHHHH-HHCCCCHHHEEEECC--
T ss_conf 999975899668808999889877799999999999873-5---983999962542598999-980998467589666--
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHH------------------HHHHHHHHH-CCCC
Q ss_conf 010134212323788755443102221111210353220554240001------------------456777663-0343
Q gi|254780217|r 100 NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAA------------------NALLKSLEE-PPQK 160 (347)
Q Consensus 100 ~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~Aa------------------NALLK~LEE-Pp~~ 160 (347)
-++||.-++...+-.+ +..-++|+|++-.|...+. -||.|+--- ...+
T Consensus 116 ----------~~~Eq~l~i~~~li~s---~~~dliViDSvaal~p~~E~e~~~~d~~vg~~ArlmskalRklt~~l~k~~ 182 (325)
T cd00983 116 ----------DTGEQALEIADSLVRS---GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSN 182 (325)
T ss_pred ----------CHHHHHHHHHHHHHCC---CCCCEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf ----------3899999999997515---887679981511236578876011321143899999999999998753378
Q ss_pred CCEEEEECCCCCC
Q ss_conf 4167650443357
Q gi|254780217|r 161 VLFILISHASPTI 173 (347)
Q Consensus 161 t~fiLit~~~~~i 173 (347)
|.+|+|.+-..++
T Consensus 183 ~~lIfiNQ~R~ki 195 (325)
T cd00983 183 TTVIFINQLREKI 195 (325)
T ss_pred CEEEEEEEEHHHC
T ss_conf 0799955432215
No 444
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=91.79 E-value=0.26 Score=30.19 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=71.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH-H
Q ss_conf 663117989888999999999981779988643121012678867999967898754530010001013421232378-8
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD-E 114 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd-~ 114 (347)
.+++.|+||.||+|+..++|.+...... .+..+|=.+.+.. .....+..+. .++- -
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~---------------------~~~~vpi~~~l~~-~~~~~~~~~q-~~~~~~ 280 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTL---------------------EPEDVPIFLLLNA-FALARKFEKQ-LSLIDY 280 (824)
T ss_pred HEEEECCCCCCHHHHHHHHHHHHHHCCC---------------------CCCCCCEEEEECC-HHHHHHHHHC-CCHHHH
T ss_conf 3334468887626799999999741525---------------------6656773444231-5654444521-649999
Q ss_pred HHHHHHHCC---------CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH----HCCCCCCEEEEECCCCCCCHHHHCEE
Q ss_conf 755443102---------22111121035322055424000145677766----30343416765044335730252036
Q gi|254780217|r 115 IRRIRYFLS---------LTANTGYWRVIMIDPVDGMNRNAANALLKSLE----EPPQKVLFILISHASPTILSTIRSRC 181 (347)
Q Consensus 115 IR~l~~~~~---------~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE----EPp~~t~fiLit~~~~~il~TI~SRc 181 (347)
+++....-. ..=...+.-.++.|..|.|-....++..+.++ |-| .+.++++| .+.- =...+..-
T Consensus 281 l~~~~~~~~~~~~~~~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~-~~~~iltc-R~~~-~~~~~~~f 357 (824)
T COG5635 281 LAEELFSQGIAKQLIEAHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYP-DAQVLLTC-RPDT-YKEEFKGF 357 (824)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCHHCCCCHHHHHHHHHHHHHCCC-CCCEEEEE-CCCC-CHHHHHHH
T ss_conf 999985146765004689999842775764033330122333789999987753057-77279982-6631-02156543
Q ss_pred EEEECCCCCHHHHHHHHH
Q ss_conf 988647999899999999
Q gi|254780217|r 182 LSIKFNSLSENNLYKALE 199 (347)
Q Consensus 182 ~~i~f~~l~~~~~~~~L~ 199 (347)
..+-..+...+.+..++.
T Consensus 358 ~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 358 AVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHHHHCCHHHHHHHHH
T ss_conf 231024244788998999
No 445
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=91.78 E-value=0.23 Score=30.72 Aligned_cols=166 Identities=17% Similarity=0.213 Sum_probs=77.4
Q ss_pred HHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC--HHHHHHHCCC
Q ss_conf 65610929999999999982889816631179898889999999999817799886431210126788--6799996789
Q gi|254780217|r 11 NQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS--PFVKQMASHA 88 (347)
Q Consensus 11 ~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~--~~~~~i~~~~ 88 (347)
.++-+|...+++.+.=.+..|.+ +=|-||.|.||+|+...++..+- ++.+....+..+... ...++. -|-
T Consensus 8 L~K~yg~~~al~~vsf~v~~Gei---~gllGpNGAGKTTl~~~l~Gl~~----p~~G~i~i~G~~~~~~~~~~~~~-ig~ 79 (301)
T TIGR03522 8 LTKLYGTQNALDEVSFEAQKGRI---VGFLGPNGAGKSTTMKIITGYLP----PDSGSVQVCGEDVLQNPKEVQRN-IGY 79 (301)
T ss_pred EEEEECCEEEECCEEEEECCCCE---EEEECCCCCCHHHHHHHHHCCCC----CCCCEEEECCEECCCCHHHHHHH-CEE
T ss_conf 99999999997360678859819---99999999819999999967956----89777999275134487999853-767
Q ss_pred CCCEEEE--CCCCHH------HCCCCCCCCCHHHHHHHHHHCCCCCC----------------------CCCCHHHHHHH
Q ss_conf 8754530--010001------01342123237887554431022211----------------------11210353220
Q gi|254780217|r 89 LHDFLYL--SYSLNP------KTGKWRTVITVDEIRRIRYFLSLTAN----------------------TGYWRVIMIDP 138 (347)
Q Consensus 89 hpd~~~i--~~~~~~------k~~~~~~~I~vd~IR~l~~~~~~~~~----------------------~~~~Ki~IId~ 138 (347)
-|+...+ .....+ .--........+.+.++.+.+.+.+. .++-+|+|+||
T Consensus 80 ~pq~~~l~~~ltv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrl~la~aL~~~P~lliLDE 159 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE 159 (301)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 45556567888999999999997399989999999999988188566548276779988445998898707998999948
Q ss_pred HH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEE
Q ss_conf 55-424000145677766303434167650443357302520369886
Q gi|254780217|r 139 VD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 (347)
Q Consensus 139 ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~ 185 (347)
.= -|...+...+..+|.+-.++..+|++||+.+- ...+-.|+..++
T Consensus 160 Pt~GLDp~~~~~~~~~l~~l~~~~TillssH~l~e-~e~lcdri~ii~ 206 (301)
T TIGR03522 160 PTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQE-VEAICDRVIIIN 206 (301)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHH-HHHHCCEEEEEE
T ss_conf 86678989999999999987599999998785899-998699999998
No 446
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.72 E-value=0.36 Score=29.08 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=23.0
Q ss_pred HHHHHHHH-HCCHHHHHHHHHHHHHCC-CCCCEEEEECCCC
Q ss_conf 35322055-424000145677766303-4341676504433
Q gi|254780217|r 133 VIMIDPVD-GMNRNAANALLKSLEEPP-QKVLFILISHASP 171 (347)
Q Consensus 133 i~IId~ad-~ln~~AaNALLK~LEEPp-~~t~fiLit~~~~ 171 (347)
|+|+||.- .|...+...+++.|.+-- .+..+|++||+++
T Consensus 110 ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd~~ 150 (176)
T cd03238 110 LFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 89971774458987999999999999987998999947879
No 447
>PRK13947 shikimate kinase; Provisional
Probab=91.71 E-value=0.2 Score=31.13 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.6
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 631179898889999999999817
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
+.+.|.+|+||+|.++.+|+.+-.
T Consensus 4 I~LiG~mGsGKTtiGk~La~~L~~ 27 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKKVATTLSF 27 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 899799999889999999999796
No 448
>KOG1533 consensus
Probab=91.69 E-value=0.45 Score=28.28 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 8166311798988899999999998
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+-+.+..||||.||+|.-....+.+
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533 2 PFGQVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf 7506887699998531132099999
No 449
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA; InterPro: IPR005895 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the cytochrome c biogenesis protein encoded by ccmA in bacteria and one arabidopsis protein, possibly encoded by an organelle. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The post-translational pathway includes the transport of a heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which functions as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.; GO: 0005215 transporter activity, 0017004 cytochrome complex assembly, 0030288 outer membrane-bounded periplasmic space.
Probab=91.66 E-value=0.15 Score=32.17 Aligned_cols=24 Identities=50% Similarity=0.541 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 816631179898889999999999
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
.+++.+.||.|+||||+=+.+|--
T Consensus 26 Ge~l~v~GpNG~GKTtLLR~LAGL 49 (204)
T TIGR01189 26 GEALQVEGPNGIGKTTLLRILAGL 49 (204)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 827898606987357899999850
No 450
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.63 E-value=0.19 Score=31.33 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 63117989888999999999981
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
+-|+|.+|.||+|+|..+.+.|.
T Consensus 2 iW~tGLsgsGKTTlA~~l~~~L~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89879999999999999999999
No 451
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=91.61 E-value=0.095 Score=33.73 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=49.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH--HHHHCCCCCCEEEECCCC----HHHCCCCCCC
Q ss_conf 6631179898889999999999817799886431210126788679--999678987545300100----0101342123
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFV--KQMASHALHDFLYLSYSL----NPKTGKWRTV 109 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~--~~i~~~~hpd~~~i~~~~----~~k~~~~~~~ 109 (347)
-+-+.|++|+||+|+|+.++..+-+. ...--+.+..-.+..+..+ +...+..||+-+-.+.-. +-+.++. -.
T Consensus 10 iIgIaG~SgSGKTTv~~~l~~~~~~~-~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~-v~ 87 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLGVE-KVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP-VD 87 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEECCCCCCCHHHCCHHHCCCCCCCCHHHHCHHHHHHHHHHHHCCCC-CC
T ss_conf 99986798778899999999982867-52476522320253016675537857448234368999999999976992-24
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHH
Q ss_conf 23788755443102221111210353220554240001456
Q gi|254780217|r 110 ITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANAL 150 (347)
Q Consensus 110 I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNAL 150 (347)
+.+=+=. -..+...+-...+.+|+||+.+..++.+..+-+
T Consensus 88 ~P~yd~~-~~~r~~~~i~~~p~~VIIvEGi~~l~d~~lr~~ 127 (218)
T COG0572 88 LPVYDYK-THTREPETIKVEPNDVVIVEGILLLYDERLRDL 127 (218)
T ss_pred CCCCCHH-CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHH
T ss_conf 5642031-363257733138972899942300150767766
No 452
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=91.61 E-value=0.51 Score=27.84 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=26.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 889816631179898889999999999817
Q gi|254780217|r 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 31 ~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
.+-+++++++|+.|.|||..+..+.++|..
T Consensus 84 ~~~~QsIiisGESGAGKTes~K~il~yL~~ 113 (677)
T cd01387 84 AKQNQCVIISGESGSGKTEATKLILRYLAA 113 (677)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 099925999827978898899999999876
No 453
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=91.52 E-value=0.58 Score=27.38 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=25.1
Q ss_pred HHHHHHHHHC-CHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 3532205542-40001456777663034341676504433
Q gi|254780217|r 133 VIMIDPVDGM-NRNAANALLKSLEEPPQKVLFILISHASP 171 (347)
Q Consensus 133 i~IId~ad~l-n~~AaNALLK~LEEPp~~t~fiLit~~~~ 171 (347)
+||+||+|.- ...-...+-+.++|-.+++-||.||++..
T Consensus 152 FyvLDEVDAALD~~Nv~r~a~~ike~s~~aQFIVIThr~~ 191 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNN 191 (212)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 5897356424678889999999998477976999985889
No 454
>PRK06904 replicative DNA helicase; Validated
Probab=91.51 E-value=0.15 Score=32.25 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 898166311798988899999999998
Q gi|254780217|r 32 RMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 32 ~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+-.+-+++-|.||.||+++|+.+|...
T Consensus 219 ~~g~LiViAaRPsmGKTa~alnia~n~ 245 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFAMNLCENA 245 (472)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 757579997379875689999999999
No 455
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.50 E-value=0.32 Score=29.49 Aligned_cols=42 Identities=26% Similarity=0.445 Sum_probs=29.3
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 6109299999999999828898166311798988899999999998
Q gi|254780217|r 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 13 ~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+++|--+- -+...|..+.+. .|+-||||+||+|+-+-+|+-+
T Consensus 120 ~v~Gt~~~--li~~ly~~g~ln--tLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 120 QVFGTANP--LIKDLYQNGWLN--TLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred HHHCCCHH--HHHHHHHCCCEE--EEEECCCCCCHHHHHHHHHHHH
T ss_conf 56556218--899998437224--6996599887077999999986
No 456
>TIGR00954 3a01203 Peroxysomal long chain fatty acyl transporter; InterPro: IPR005283 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). The members of this family are integral membrane proteins and they are involved in the import of activated long-chain fatty acids from the cytosol to the peroxisomal matrix. ; GO: 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane.
Probab=91.49 E-value=0.18 Score=31.42 Aligned_cols=44 Identities=25% Similarity=0.239 Sum_probs=28.8
Q ss_pred HHHCCHHHHHHHHHHHHH------CCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 561092999999999998------288981663117989888999999999
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYC------SGRMHHALLFEGEQGIGKATLGFRYAG 56 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~------~~~l~ha~Lf~Gp~GiGK~~~A~~~A~ 56 (347)
+.|....+.++.|..+-. +|.-.| +|+.||.|+||.++=|.++.
T Consensus 529 dPitsksnsiqdlskandiklPflqGsG~~-lLi~GPNGCGKSSLFRiLGe 578 (788)
T TIGR00954 529 DPITSKSNSIQDLSKANDIKLPFLQGSGNH-LLICGPNGCGKSSLFRILGE 578 (788)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCCE-EEEECCCCCCHHHHHHHHHH
T ss_conf 342322235665554302435512158876-68768899864789999864
No 457
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=91.45 E-value=0.22 Score=30.73 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 816631179898889999999999
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
.++.|+.||+|+||+++|+.+.+.
T Consensus 14 g~GvLi~G~SG~GKS~lal~Li~r 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 989999878999989999999981
No 458
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.43 E-value=0.2 Score=31.16 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 631179898889999999999817
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
+.+.|++|+||+|.++.+|+.+-.
T Consensus 7 I~LiG~mGsGKstvgk~LA~~l~~ 30 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLNM 30 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 898899999889999999999699
No 459
>PRK10646 putative ATPase; Provisional
Probab=91.42 E-value=0.35 Score=29.21 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=26.8
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 999999828898166311798988899999999998177
Q gi|254780217|r 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQN 61 (347)
Q Consensus 23 ~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~ 61 (347)
.|...+..| -.++++|+=|.|||+|++.+++.+=+.
T Consensus 20 ~la~~l~~g---~vi~L~G~LGaGKTtf~r~i~~~lg~~ 55 (153)
T PRK10646 20 RVAKACDGA---TVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred HHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 999768999---799998888789999999999984997
No 460
>PRK05636 replicative DNA helicase; Provisional
Probab=91.40 E-value=0.2 Score=31.11 Aligned_cols=25 Identities=16% Similarity=0.493 Sum_probs=18.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 8166311798988899999999998
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
..-+++-|.||.||+++|+.+|..+
T Consensus 267 G~LiIiAARPsmGKTalAlnia~n~ 291 (507)
T PRK05636 267 GQMIIVAARPGVGKSTIALDFMRSA 291 (507)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 5679997378786689999999999
No 461
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.33 E-value=0.17 Score=31.78 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.2
Q ss_pred EECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 31179898889999999999817
Q gi|254780217|r 38 LFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 38 Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
-+-||+|+||+|+|..+|+.+-.
T Consensus 3 aIdGpagsGKsT~ak~lA~~l~~ 25 (147)
T cd02020 3 AIDGPAGSGKSTVAKLLAKKLGL 25 (147)
T ss_pred EEECCCCCCHHHHHHHHHHHHCC
T ss_conf 88689978989999999999099
No 462
>PRK04132 replication factor C small subunit; Provisional
Probab=91.31 E-value=0.21 Score=30.91 Aligned_cols=145 Identities=26% Similarity=0.421 Sum_probs=112.1
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHH
Q ss_conf 55558756561092999999999998288981663117989888999999999981779988643121012678867999
Q gi|254780217|r 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQ 83 (347)
Q Consensus 4 ~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~ 83 (347)
+||||+..++||||++++..|++..+.+.||| +||.||||+||+|.|+.+|+-|+-.+ .+
T Consensus 17 EKYRPk~LddIVgQehIVkRLK~YVk~~smPH-LLFaGPPGvGKt~~al~lar~l~ge~------------------wr- 76 (863)
T PRK04132 17 EKYRPQRLDEIVGQDHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGEN------------------WR- 76 (863)
T ss_pred HHCCCCCHHHHCCHHHHHHHHHHHHCCCCCCC-EEECCCCCCCCHHHHHHHHHHHHCCH------------------HH-
T ss_conf 53187616552274999999998862388854-43048998771447888888761431------------------45-
Q ss_pred HHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCC-CCC-CCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 96789875453001000101342123237887554431022-211-1121035322055424000145677766303434
Q gi|254780217|r 84 MASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL-TAN-TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKV 161 (347)
Q Consensus 84 i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~-~~~-~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t 161 (347)
.++++++. .+++ .++.+|+.++.++. +|. .++.|++.+|+.|.++..+||++..+.|+...++
T Consensus 77 ------~nflelna-s~~~--------~~~~~~~~v~~~~~~~p~~~~~~k~~~~de~~~l~~d~~~~~r~~~e~~~~~~ 141 (863)
T PRK04132 77 ------HNFLELNA-SDER--------GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNV 141 (863)
T ss_pred ------HHHHHHCC-CCCC--------CCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf ------55664144-2123--------63488887775068664578654246443656401011577876677742124
Q ss_pred CEEEEECCCCCCCHHHHCEEEE
Q ss_conf 1676504433573025203698
Q gi|254780217|r 162 LFILISHASPTILSTIRSRCLS 183 (347)
Q Consensus 162 ~fiLit~~~~~il~TI~SRc~~ 183 (347)
.||+-+..-..=.-|=..|-.+
T Consensus 142 ~~~~~~~t~~~ki~t~~~relk 163 (863)
T PRK04132 142 RFILSCLTGDAKIYTPDERELK 163 (863)
T ss_pred HHHHHHCCCCCEEECCCCCEEE
T ss_conf 4433313465126603564566
No 463
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=91.30 E-value=0.2 Score=31.17 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.4
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 631179898889999999999817
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
+-+.||.|+||+|+|..++..|-.
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~ 25 (196)
T pfam00485 2 IGVAGSSGAGKTTVARTFVSIFGR 25 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 899899857199999999999660
No 464
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=91.27 E-value=1.3 Score=24.66 Aligned_cols=163 Identities=13% Similarity=0.189 Sum_probs=76.5
Q ss_pred HCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEE
Q ss_conf 10929999999999982889816631179898889999999999817799886431210126788679999678987545
Q gi|254780217|r 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 (347)
Q Consensus 14 i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~ 93 (347)
.+|....-.+..+.....-++-.++..||.|+||+|+.-.+-...+.......+ .. ..+..|.+.
T Consensus 3 ~vgi~~l~~~r~~~~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~----~~-----------~~~~~~~~~ 67 (373)
T COG5019 3 YVGISNLPNQRHRKLSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDD----IR-----------AEGTSPTLE 67 (373)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC----CC-----------CCCCCCCEE
T ss_conf 677475427888999855996389996278875557887656765257777557----66-----------666776258
Q ss_pred EECC--CCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH----HHHHHH-HHHHCCCCCCEEEE
Q ss_conf 3001--0001013421232378875544310222111121035322055424000----145677-76630343416765
Q gi|254780217|r 94 YLSY--SLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA----ANALLK-SLEEPPQKVLFILI 166 (347)
Q Consensus 94 ~i~~--~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A----aNALLK-~LEEPp~~t~fiLi 166 (347)
.... ..+++ ..+-++.|=++-....++.- .+-|.. |++.++.+..+. ++.-.- .....--++.+.|+
T Consensus 68 i~~~~~~l~e~--~~~~~l~vIDtpGfGD~idN---s~~we~-I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI 141 (373)
T COG5019 68 IKITKAELEED--GFHLNLTVIDTPGFGDFIDN---SKCWEP-IVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFI 141 (373)
T ss_pred EEEEEEEEECC--CEEEEEEEECCCCCCCCCCC---CCCHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEE
T ss_conf 88643166048--74898888615886565464---101799-9999999999999986434556654468248999984
Q ss_pred ECCCCCCCH-------HHHCEEEEEEC----CCCCHHHHHHH
Q ss_conf 044335730-------25203698864----79998999999
Q gi|254780217|r 167 SHASPTILS-------TIRSRCLSIKF----NSLSENNLYKA 197 (347)
Q Consensus 167 t~~~~~il~-------TI~SRc~~i~f----~~l~~~~~~~~ 197 (347)
....+.|.| .|-.||-.+++ -.++.+++..+
T Consensus 142 ~Ptgh~l~~~DIe~Mk~ls~~vNlIPVI~KaD~lT~~El~~~ 183 (373)
T COG5019 142 RPTGHGLKPLDIEAMKRLSKRVNLIPVIAKADTLTDDELAEF 183 (373)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 689887878889999998533675656624665899999999
No 465
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=91.24 E-value=0.37 Score=28.99 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=27.1
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2889816631179898889999999999817
Q gi|254780217|r 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 30 ~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
..+-+++++++|..|.|||..+..+.++|..
T Consensus 87 ~~~~~QsIiiSGESGAGKTes~K~il~yL~~ 117 (693)
T cd01377 87 QDRENQSILITGESGAGKTENTKKVIQYLAS 117 (693)
T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7499806999688988889999999999999
No 466
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=91.23 E-value=0.96 Score=25.64 Aligned_cols=53 Identities=15% Similarity=0.348 Sum_probs=33.5
Q ss_pred CHHHHHHHHH-HCCHHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCHHHHCEEEEEE
Q ss_conf 1035322055-424000145677766303-434167650443357302520369886
Q gi|254780217|r 131 WRVIMIDPVD-GMNRNAANALLKSLEEPP-QKVLFILISHASPTILSTIRSRCLSIK 185 (347)
Q Consensus 131 ~Ki~IId~ad-~ln~~AaNALLK~LEEPp-~~t~fiLit~~~~~il~TI~SRc~~i~ 185 (347)
-+|++.||.= .|...++..++++|++-. +...+|++||+++ +-.. -.|+..++
T Consensus 163 p~vlllDEPT~~LD~~~~~~v~~ll~~l~~~G~tii~vtHd~~-~a~~-a~Rii~~~ 217 (648)
T PRK10535 163 GQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VAAQ-AERVIEIR 217 (648)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHH-CCEEEEEE
T ss_conf 9899956885557999999999999999977999999764869-9964-99799995
No 467
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=91.18 E-value=0.39 Score=28.80 Aligned_cols=131 Identities=19% Similarity=0.188 Sum_probs=62.1
Q ss_pred HHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC-CCCHHHHHHHCCCCCCEEEECCCCH
Q ss_conf 99999828898--16631179898889999999999817799886431210126-7886799996789875453001000
Q gi|254780217|r 24 LSQYYCSGRMH--HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD-PCSPFVKQMASHALHDFLYLSYSLN 100 (347)
Q Consensus 24 L~~~~~~~~l~--ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~-~~~~~~~~i~~~~hpd~~~i~~~~~ 100 (347)
|..++-.|=+| .-.-|+||+++||+++|+++++.-- .. ++.|--...+ ..++.. .-.-|.-+|=+++..+
T Consensus 40 lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQ-k~---gg~~~~iD~E~a~d~~~-a~~lGVD~~~l~~~qp-- 112 (322)
T pfam00154 40 LDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQ-KA---GGTAAFIDAEHALDPVY-AKKLGVDIDNLLVSQP-- 112 (322)
T ss_pred HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HC---CCEEEEEEHHHHCCHHH-HHHCCCCHHHEEEECC--
T ss_conf 99987589977870899988987778999999999997-34---99389985366059889-9980988025389778--
Q ss_pred HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH------------------HHHHHHHHH-HCCCCC
Q ss_conf 1013421232378875544310222111121035322055424000------------------145677766-303434
Q gi|254780217|r 101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA------------------ANALLKSLE-EPPQKV 161 (347)
Q Consensus 101 ~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A------------------aNALLK~LE-EPp~~t 161 (347)
-++||.-++...+-.+ +...++|+|++-.|...+ ..||.|+-- =.-.+|
T Consensus 113 ---------d~~Eqal~i~~~li~~---~~~~liViDSvaal~p~~E~e~~~~d~~~g~~Ar~ms~alRklt~~l~k~~~ 180 (322)
T pfam00154 113 ---------DTGEQALEIADMLVRS---GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNT 180 (322)
T ss_pred ---------CHHHHHHHHHHHHHCC---CCCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf ---------8399999999998537---9976599825345676888752432232135799999999999999730585
Q ss_pred CEEEEECCCCCC
Q ss_conf 167650443357
Q gi|254780217|r 162 LFILISHASPTI 173 (347)
Q Consensus 162 ~fiLit~~~~~i 173 (347)
.+|+|.+-.+++
T Consensus 181 ~~IfiNQ~R~ki 192 (322)
T pfam00154 181 TVIFINQIRMKI 192 (322)
T ss_pred EEEEEEEEHHHC
T ss_conf 499976551114
No 468
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.18 E-value=0.55 Score=27.60 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 0929999999999982889816631179898889999999999
Q gi|254780217|r 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 15 ~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
+|...+.+.+.=.+..|.+ +-+.||.|.||+|+.+.++..
T Consensus 10 yg~~~al~~vs~~v~~Gei---~gllG~NGaGKSTLl~~i~Gl 49 (208)
T cd03268 10 YGKKRVLDDISLHVKKGEI---YGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred ECCEEEECCEEEEECCCCE---EEEECCCCCCHHHHHHHHHCC
T ss_conf 9999987151668869819---999999999999999999578
No 469
>PRK05480 uridine kinase; Provisional
Probab=91.08 E-value=0.26 Score=30.28 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 898166311798988899999999998
Q gi|254780217|r 32 RMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 32 ~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+-|.-+-+.|++|+||+|+|..++..+
T Consensus 4 k~P~iIgIaG~SgSGKTT~a~~L~~~l 30 (209)
T PRK05480 4 KQPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 898899998999778999999999980
No 470
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=91.04 E-value=0.82 Score=26.22 Aligned_cols=127 Identities=14% Similarity=0.154 Sum_probs=59.8
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCC----CCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCC
Q ss_conf 66311798988899999999998177998----86431210126788679999678987545300100010134212323
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQNPDF----SKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVIT 111 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~----~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~ 111 (347)
++++.|++|+||+++..++.. ....... .-.|+-.+. +..-...++.+. -||-. +
T Consensus 1 ~ivilG~~~~GKTsll~~l~~-~~~~~~~~~~~~~~~Tvg~~----------~~~i~~~~~~l~--iwD~~--------G 59 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKT-LFSKYKGLPPSKITPTVGLN----------IGTIEVGNARLK--FWDLG--------G 59 (167)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCCCCCCCCCCCCCCCEE----------EEEEEECCEEEE--EEECC--------C
T ss_conf 999999999888899998875-03676777655403531326----------899998999999--99689--------8
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-HHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHCEEEEEECCCC
Q ss_conf 78875544310222111121035322055424-0001456777663-034341676504433573025203698864799
Q gi|254780217|r 112 VDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-RNAANALLKSLEE-PPQKVLFILISHASPTILSTIRSRCLSIKFNSL 189 (347)
Q Consensus 112 vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-~~AaNALLK~LEE-Pp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l 189 (347)
-+..|.+.......+ . -=|+++|..+.-+ .++.+.|.+.+.+ .+++..++++.|..+ +.. ..
T Consensus 60 qe~~~~l~~~y~~~a-~--~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~D-l~~------------~~ 123 (167)
T cd04160 60 QESLRSLWDKYYAEC-H--AIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQD-LPD------------AL 123 (167)
T ss_pred CHHHHHHHHHHCCCC-C--EEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC-CCC------------CC
T ss_conf 788878998742898-7--8999986686788999999999975110248962999970667-665------------77
Q ss_pred CHHHHHHHHH
Q ss_conf 9899999999
Q gi|254780217|r 190 SENNLYKALE 199 (347)
Q Consensus 190 ~~~~~~~~L~ 199 (347)
+.+++.+.+.
T Consensus 124 ~~~ei~~~~~ 133 (167)
T cd04160 124 SVEEIKEVFQ 133 (167)
T ss_pred CHHHHHHHHH
T ss_conf 8999999999
No 471
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=91.04 E-value=0.79 Score=26.33 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=57.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHH
Q ss_conf 16631179898889999999999817799886431210126788679999678987545300100010134212323788
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDE 114 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~ 114 (347)
.++|+.||.|.|||++-..+...=....-++-.|.. ...........+.+++.+ +=+.
T Consensus 4 ptvLllGl~~sGKT~Lf~~L~~~~~~~T~tS~~~n~----------~~~~~~~~~~~~~lvD~P------------Gh~k 61 (181)
T pfam09439 4 PAVIIAGLCDSGKTSLFTLLTTGSVRKTVTSQEPSA----------AYKYMNNKGNSLTLIDFP------------GHVK 61 (181)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCEECCCCCCC----------EEEEECCCCCEEEEEECC------------CCHH
T ss_conf 869998689998999999997599487588867864----------068751689668999889------------9689
Q ss_pred HHH-HHHHCCCCCCCCCCHHHHHHHH-HHCC-HHHHHHHHHHHHHC---CCCCCEEEEECCCCCCCHHHHCEEEEEECCC
Q ss_conf 755-4431022211112103532205-5424-00014567776630---3434167650443357302520369886479
Q gi|254780217|r 115 IRR-IRYFLSLTANTGYWRVIMIDPV-DGMN-RNAANALLKSLEEP---PQKVLFILISHASPTILSTIRSRCLSIKFNS 188 (347)
Q Consensus 115 IR~-l~~~~~~~~~~~~~Ki~IId~a-d~ln-~~AaNALLK~LEEP---p~~t~fiLit~~~~~il~TI~SRc~~i~f~~ 188 (347)
+|. +.+.+..++ ...-=|++||.+ +.=+ .++|.-|--+|-.+ +...-+++.||..+ + +..
T Consensus 62 lR~~~~~~~~~~~-~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqD-l------------~~A 127 (181)
T pfam09439 62 LRYKLLETLKDSS-SLRGLVFVVDSTAFPKEVTDTAEFLYDILSITELLKNGIDILIACNKQE-I------------FTA 127 (181)
T ss_pred HHHHHHHHHHHHC-CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHCCCCCCEEEEEECCC-C------------CCC
T ss_conf 9999998643002-6449999997866566799999999999844543368997899973746-3------------357
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9989999999972
Q gi|254780217|r 189 LSENNLYKALEQL 201 (347)
Q Consensus 189 l~~~~~~~~L~~~ 201 (347)
.+...+++.|+.+
T Consensus 128 ~~~~~Ik~~LEkE 140 (181)
T pfam09439 128 RPPKKIKQALEKE 140 (181)
T ss_pred CCHHHHHHHHHHH
T ss_conf 7999999999999
No 472
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=91.01 E-value=0.71 Score=26.69 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=32.3
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf 6311798988899999999998177998864312101267886799996789875453
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLY 94 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~ 94 (347)
+-+||.-||||+|++..++.+|=.... ..-.-.| |+.+.+.+.+.....|+++.
T Consensus 3 iaiyGKGGIGKSTtsaNlsaaLA~~Gk--kVl~IGc--Dpk~DsT~~L~g~~~~tvld 56 (271)
T CHL00072 3 IAVYGKGGIGKSTTSCNISIALARRGK--KVLQIGC--DPKHDSTFTLTGFLIPTIID 56 (271)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC--EEEEECC--CCHHHHHHHHCCCCCCCHHH
T ss_conf 999789854485889999999998799--7999789--97377774006998885999
No 473
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.00 E-value=0.2 Score=31.21 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 663117989888999999999981
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
.+.+.|++|+||+|.++++|+.|.
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 189971799977689999999819
No 474
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=90.99 E-value=0.2 Score=31.18 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=19.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 63117989888999999999981
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
+-+.||+|+||+|+|..++..+-
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89989897789999999999984
No 475
>COG3910 Predicted ATPase [General function prediction only]
Probab=90.93 E-value=1 Score=25.52 Aligned_cols=158 Identities=15% Similarity=0.032 Sum_probs=83.2
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCH-HHCCCCCC----C
Q ss_conf 555587565610929999999999982889816631179898889999999999817799886431-21012678----8
Q gi|254780217|r 4 RAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPV-RMCNPDPC----S 78 (347)
Q Consensus 4 ~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~-~~~~~~~~----~ 78 (347)
.+=+|-+|.+.--.=.+.+.|...+.- |-|- -.|+|..|+||.|+-.++|. .|.-+..++.- ..-..+.. .
T Consensus 9 l~ekve~~~eYp~slPa~r~l~~~LeF-~apI-T~i~GENGsGKSTLLEaiA~--~~~~n~aGg~~n~~~~~~~s~s~l~ 84 (233)
T COG3910 9 LLEKVESFEEYPFSLPAFRHLEERLEF-RAPI-TFITGENGSGKSTLLEAIAA--GMGFNAAGGGKNFKGELDASHSALV 84 (233)
T ss_pred HHHCCCCHHHCCCCCHHHHHHHHHCCC-CCCE-EEEECCCCCCHHHHHHHHHH--HCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 431556354386435677755442234-6864-89976898657889999996--5651455787675751143314687
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCC-CHHHHHHHHH----HCC-CCCCC----------CCCHHHHHHHHH-H
Q ss_conf 67999967898754530010001013421232-3788755443----102-22111----------121035322055-4
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVI-TVDEIRRIRY----FLS-LTANT----------GYWRVIMIDPVD-G 141 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I-~vd~IR~l~~----~~~-~~~~~----------~~~Ki~IId~ad-~ 141 (347)
...+......-|+-++++.+.. -..+ .+||.+.-.+ .+. .+-.+ .+.-++|+|+.| -
T Consensus 85 ~~~k~~~~~k~~~g~FlRAEs~------yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~ 158 (233)
T COG3910 85 DYAKLHKRKKPPIGFFLRAESF------YNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAA 158 (233)
T ss_pred HHHHHHHCCCCCCCEEEEHHHH------HHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 7688750678875068744677------7799888762201025774235541431899999998315841885686444
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCEEEEECCCC
Q ss_conf 24000145677766303-4341676504433
Q gi|254780217|r 142 MNRNAANALLKSLEEPP-QKVLFILISHASP 171 (347)
Q Consensus 142 ln~~AaNALLK~LEEPp-~~t~fiLit~~~~ 171 (347)
++.+-|=+||+.|-.-- +..-||+.|+.|-
T Consensus 159 LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 159 LSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 7888899999999998736783999836814
No 476
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=90.93 E-value=0.42 Score=28.57 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=26.7
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 889816631179898889999999999817
Q gi|254780217|r 31 GRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 31 ~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
.+-+++++++|..|.|||..+..+.++|..
T Consensus 91 ~~~~QsIiiSGESGaGKTe~~K~il~yL~~ 120 (692)
T cd01385 91 KKVNQCIVISGESGSGKTESTNFLIHHLTA 120 (692)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 399828999648989878999999999999
No 477
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=90.92 E-value=0.15 Score=32.22 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHCCHHHHH-HHHHHHH--HCCCCCCEEEEECCCCCCCHHHHCEEEEEECC
Q ss_conf 2103532205542400014-5677766--30343416765044335730252036988647
Q gi|254780217|r 130 YWRVIMIDPVDGMNRNAAN-ALLKSLE--EPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 (347)
Q Consensus 130 ~~Ki~IId~ad~ln~~AaN-ALLK~LE--EPp~~t~fiLit~~~~~il~TI~SRc~~i~f~ 187 (347)
.+.+|+||-|-+=-.+.+. +=||.+= .++-.+++.|.++...+.+..|..+-..+.+.
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~ 341 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPID 341 (407)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 1888999689988337899999999970356621799984576468899999972458866
No 478
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.90 E-value=0.23 Score=30.70 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.6
Q ss_pred EEECCCCCCCHHHHHHHHHHHH
Q ss_conf 6311798988899999999998
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+-+.|++|+||+|+|..+++.+
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988999885999999999980
No 479
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=90.87 E-value=0.34 Score=29.29 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=26.7
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999982889816631179898889999999999817
Q gi|254780217|r 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 23 ~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
.|......| -.+++.|+=|.|||||++.+|+.+--
T Consensus 17 ~l~~~l~~g---~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 17 RLAEALKAG---DVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred HHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 999657899---88999778768859999999997499
No 480
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=90.85 E-value=0.8 Score=26.28 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=21.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 16631179898889999999999817
Q gi|254780217|r 35 HALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 35 ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
-.+++.|+.|+||+|+..+|.+...-
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~ 31 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP 31 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 79999999999889999999647676
No 481
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=90.85 E-value=0.49 Score=27.99 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=55.1
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHH
Q ss_conf 31179898889999999999817799886431210126788679999678987545300100010134212323788755
Q gi|254780217|r 38 LFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR 117 (347)
Q Consensus 38 Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~ 117 (347)
+-+|.-|+||++++..+|..+=.. +..-. ....|. =.++.|-|++.++.+.. . . +.+
T Consensus 4 v~sgKgGvGkt~~~~nLa~~la~~-G~~vl---l~D~D~-------g~an~~~D~viiD~~aG----~-----~-~~~-- 60 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKL-GKRVL---LLDADL-------GLANLDYDYIIIDTGAG----I-----S-DNV-- 60 (139)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHC-CCCEE---EEECCC-------CCCCCCCCEEEEECCCC----C-----C-HHH--
T ss_conf 964999983999999999999978-99699---998989-------99657999999948999----8-----7-789--
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 4431022211112103532205542400014567776630343416765044
Q gi|254780217|r 118 IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA 169 (347)
Q Consensus 118 l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~ 169 (347)
..++. ..-.++++-..|--+..-+=+|+|.+-+-....-|-++.|.
T Consensus 61 -~~~~~-----~ad~~lvV~tpeptSi~DAYalIK~l~~~~~~~~~~lvvN~ 106 (139)
T cd02038 61 -LDFFL-----AADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNR 106 (139)
T ss_pred -HHHHH-----HCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf -99999-----58957999589706799999999999996399975999956
No 482
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=90.84 E-value=0.37 Score=29.01 Aligned_cols=122 Identities=17% Similarity=0.244 Sum_probs=59.1
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHH
Q ss_conf 63117989888999999999981779988643121012678867999967898754530010001013421232378875
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR 116 (347)
+++-|..|+||+|+..++...-... ..|+-..... .+ ...++-+ ..||-.+. +..|
T Consensus 2 IlilGl~~sGKTtil~~l~~~~~~~----~~pT~G~~~~-------~i---~~~~~~l--~iwD~gG~--------~~~r 57 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQ----PIPTIGFNVE-------TV---EYKNLKF--TIWDVGGK--------HKLR 57 (169)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCC----CCCCCCCCEE-------EE---EECCEEE--EEEECCCC--------CCCC
T ss_conf 9999989998899999995799689----7786881669-------99---9898899--99989997--------2446
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHCCH-HHHHHHHHHHHHCC-CCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHH
Q ss_conf 5443102221111210353220554240-00145677766303-434167650443357302520369886479998999
Q gi|254780217|r 117 RIRYFLSLTANTGYWRVIMIDPVDGMNR-NAANALLKSLEEPP-QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNL 194 (347)
Q Consensus 117 ~l~~~~~~~~~~~~~Ki~IId~ad~ln~-~AaNALLK~LEEPp-~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~ 194 (347)
.+-+..... ..-=|+++|..|.-+. +|...|-+.+.+++ .+..+++++|..+ +. ..++.+++
T Consensus 58 ~~w~~Yy~~---~~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~D-l~------------~~~~~~ei 121 (169)
T cd04158 58 PLWKHYYLN---TQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQD-VA------------GALSVEEM 121 (169)
T ss_pred HHHHHHCCC---CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC-CC------------CCCCHHHH
T ss_conf 367875557---627999998630677999999999997127537984999973556-77------------79899999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780217|r 195 YKAL 198 (347)
Q Consensus 195 ~~~L 198 (347)
.+.+
T Consensus 122 ~~~l 125 (169)
T cd04158 122 TELL 125 (169)
T ss_pred HHHH
T ss_conf 9985
No 483
>KOG0480 consensus
Probab=90.80 E-value=0.57 Score=27.47 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=82.2
Q ss_pred CCHHHHCCHHHHHHHHHHHHHCCC------------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 756561092999999999998288------------98166311798988899999999998177998864312101267
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCSGR------------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~~~------------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
+-|..|+||+.++.-+.=++-.|- =.| .++.|.||.||..+-.+.+.. .+-.-+.||.-++..
T Consensus 342 Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDin-v~iVGDPgt~KSQfLk~v~~f----sPR~vYtsGkaSSaA 416 (764)
T KOG0480 342 SLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDIN-VCIVGDPGTGKSQFLKAVCAF----SPRSVYTSGKASSAA 416 (764)
T ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE-EEEECCCCCCHHHHHHHHHCC----CCCCEEECCCCCCCC
T ss_conf 637620153899866899984785435789865467731-899579971388999998654----873158507634434
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 88679999678987545300100010134212323788755443102221111210353220554240001456777663
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
|-..- ++ -|+.++.. . ++--.+ ..++.-||=||+.|+|+..-+-|++--||.
T Consensus 417 ----------GLTaa--Vv---kD~esgdf----~-------iEAGAL--mLADnGICCIDEFDKMd~~dqvAihEAMEQ 468 (764)
T KOG0480 417 ----------GLTAA--VV---KDEESGDF----T-------IEAGAL--MLADNGICCIDEFDKMDVKDQVAIHEAMEQ 468 (764)
T ss_pred ----------CCEEE--EE---ECCCCCCE----E-------EECCCE--EECCCCEEEECHHCCCCHHHHHHHHHHHHH
T ss_conf ----------64689--97---63777733----5-------534737--881696688310003570768999999875
Q ss_pred -------------CCCCCCEEEEECCC--------------CCCCHHHHCEEEEEEC
Q ss_conf -------------03434167650443--------------3573025203698864
Q gi|254780217|r 157 -------------PPQKVLFILISHAS--------------PTILSTIRSRCLSIKF 186 (347)
Q Consensus 157 -------------Pp~~t~fiLit~~~--------------~~il~TI~SRc~~i~f 186 (347)
-|..|-+ |.+.|| -++-++|.||--.|-+
T Consensus 469 QtISIaKAGv~aTLnARtSI-lAAANPv~GhYdR~ktl~eNi~msApimSRFDL~Fi 524 (764)
T KOG0480 469 QTISIAKAGVVATLNARTSI-LAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFI 524 (764)
T ss_pred HEEHHEECCEEEEECCHHHH-HHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHCEEEE
T ss_conf 10003302068862223555-553277677455330066522778045422227999
No 484
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=90.79 E-value=0.64 Score=27.06 Aligned_cols=127 Identities=16% Similarity=0.188 Sum_probs=65.0
Q ss_pred HCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEE
Q ss_conf 10929999999999982889816631179898889999999999817799886431210126788679999678987545
Q gi|254780217|r 14 LFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 (347)
Q Consensus 14 i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~ 93 (347)
+.|=..-...|......=+-.--+++-|.||.|||++|..+|..+--. ..-| +-
T Consensus 176 ~~Gi~tgf~~LD~~t~G~~~~dLiilAaRP~mGKTafalnia~n~a~~-------------------------~~~~-v~ 229 (435)
T COG0305 176 LIGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAAD-------------------------GRKP-VA 229 (435)
T ss_pred CCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH-------------------------CCCC-EE
T ss_conf 851446834567773377467779971689997589999999999985-------------------------5897-59
Q ss_pred EECCCCHHHCCCCCCCCCHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 300100010134212323788755-4431022211112103532205542400014567776630343416765044335
Q gi|254780217|r 94 YLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPT 172 (347)
Q Consensus 94 ~i~~~~~~k~~~~~~~I~vd~IR~-l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~ 172 (347)
++.. .-+.+|+.. +. +..+.....|+-- -.++.+-.+.+-+..++..+.. |.+-..|.-
T Consensus 230 iFSL-----------EM~~eql~~R~L---s~~s~v~~~kirt----g~l~~~d~~~l~~a~~~l~~~~--i~IdD~~~~ 289 (435)
T COG0305 230 IFSL-----------EMSEEQLVMRLL---SSESGIESSKLRT----GRLSDDEWERLIKAASELSEAP--IFIDDTPGL 289 (435)
T ss_pred EEEC-----------CCCHHHHHHHHH---CCCCCCCHHCCCC----CCCCHHHHHHHHHHHHHHHHCC--EEECCCCCC
T ss_conf 9982-----------679999999753---4011545100212----5426899999999999876178--543378888
Q ss_pred CCHHHHCEEEEEEC
Q ss_conf 73025203698864
Q gi|254780217|r 173 ILSTIRSRCLSIKF 186 (347)
Q Consensus 173 il~TI~SRc~~i~f 186 (347)
-+..|||||++++-
T Consensus 290 si~eir~~aRrlk~ 303 (435)
T COG0305 290 TITEIRSKARRLKL 303 (435)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 78889999998887
No 485
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=90.75 E-value=0.43 Score=28.41 Aligned_cols=121 Identities=12% Similarity=0.183 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC-CCHHHHHHHC------CCC
Q ss_conf 299999999999828898166311798988899999999998177998864312101267-8867999967------898
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP-CSPFVKQMAS------HAL 89 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~-~~~~~~~i~~------~~h 89 (347)
|..+++.+..++..|+ .. .|+.=.-|+|||.+|.+++..|+-..-... .+-.+.... .......+.. .+-
T Consensus 421 Q~~AI~~v~~a~~~~~-rr-aLl~MATGTGKTrtaial~~rLlk~~~~kR-ILFLvDR~~L~~QA~~~F~~~~~~~~~~~ 497 (1126)
T PRK11448 421 QEDAIQAVEKALANGQ-RE-ILLAMATGTGKTRTAIALMYRLLKAKRFKR-ILFLVDRRALGEQALDAFKDTKIEGNQTF 497 (1126)
T ss_pred HHHHHHHHHHHHHCCC-CC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCE-EEEECCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999999998098-54-688724888589899999999996587672-57985658999999998754345456664
Q ss_pred CCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCC-----CCCCCCCHHHHHHHHHH
Q ss_conf 75453001000101342123237887554431022-----21111210353220554
Q gi|254780217|r 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL-----TANTGYWRVIMIDPVDG 141 (347)
Q Consensus 90 pd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~-----~~~~~~~Ki~IId~ad~ 141 (347)
++++-+..-.+.+ ....+.|.|-.+-.|.+.+.. .+..|.+=.||||+||+
T Consensus 498 ~~~~~v~~l~~~~-~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHR 553 (1126)
T PRK11448 498 ASIYDIKGLTDKF-PEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHR 553 (1126)
T ss_pred CHHHHHHHCCCCC-CCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 0022001025678-7877719997307899875235767799998513798977878
No 486
>PRK12608 transcription termination factor Rho; Provisional
Probab=90.71 E-value=0.46 Score=28.24 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=29.9
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf 631179898889999999999817799886431210126788679999678987545300100010
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK 102 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k 102 (347)
=|+..||+.||+++-..+|+.+. .+|||++.+-.-.|+.
T Consensus 135 gLIVAPPkaGKT~LLq~IA~aI~---------------------------~NhPev~livLLIDER 173 (379)
T PRK12608 135 GLIVAPPRAGKTILLQQIAQAVA---------------------------ANHPDIHLMVLLIDER 173 (379)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH---------------------------HCCCCCEEEEEECCCC
T ss_conf 12745898657899999999998---------------------------5799848999981689
No 487
>PRK13949 shikimate kinase; Provisional
Probab=90.66 E-value=0.26 Score=30.22 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.6
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 631179898889999999999817
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
+.+.|.+|+||+|.++.+|+.+-.
T Consensus 4 I~LiG~mGsGKstiGk~La~~l~~ 27 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 899799999889999999999599
No 488
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=90.62 E-value=0.23 Score=30.71 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=17.7
Q ss_pred EEECCCCCCCHHHHHHHHHHH
Q ss_conf 631179898889999999999
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGH 57 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~ 57 (347)
+++.||+|+||++++..+.+.
T Consensus 2 ivi~GPSG~GK~tl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999988999999999851
No 489
>PRK13948 shikimate kinase; Provisional
Probab=90.62 E-value=0.31 Score=29.59 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 8981663117989888999999999981
Q gi|254780217|r 32 RMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 32 ~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
|..--+.|.|.+|+||+|.++.+|+.+-
T Consensus 8 ~~~~~IvLIG~mGsGKStiGk~LA~~l~ 35 (182)
T PRK13948 8 RPATFVALAGFMGTGKSRIGWELSRALA 35 (182)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9998189889999988999999999969
No 490
>PHA00729 NTP-binding motif containing protein
Probab=90.60 E-value=0.3 Score=29.68 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=29.9
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999982889816631179898889999999999817
Q gi|254780217|r 23 FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 23 ~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
.+.++++.+-+- +.++.|+.|+||+|.|...|+-++-
T Consensus 7 kIi~a~~~~GF~-S~iifGkQG~GKTTYAlKV~~~v~~ 43 (228)
T PHA00729 7 KIISAYNTNGFV-SAIIFGKQGTGKTTYALKVARDVFW 43 (228)
T ss_pred HHHHHHHCCCCE-EEEEECCCCCCCEEEHHHHHHHHHH
T ss_conf 999998647946-9999836778842021999999999
No 491
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=90.53 E-value=0.47 Score=28.15 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=26.9
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2889816631179898889999999999817
Q gi|254780217|r 30 SGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 30 ~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
..+-+++++++|..|.|||..+..+.++|-.
T Consensus 82 ~~~~nQsIiiSGESGaGKTestK~il~yL~~ 112 (653)
T cd01379 82 TYNQDQCIVISGESGSGKTESAHLLVQQLTV 112 (653)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7489828999578989876889999999998
No 492
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=90.50 E-value=0.26 Score=30.21 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=22.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 6631179898889999999999817
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
-++++||-|+||+.+|..+|+.+-+
T Consensus 3 l~~I~GpT~~GKT~~ai~lA~~~g~ 27 (232)
T pfam01745 3 LYLIWGATCTGKTAEAIALAKETGW 27 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 6899788777716999999999599
No 493
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=90.48 E-value=0.62 Score=27.16 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=31.1
Q ss_pred CHHHHCCH----HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 56561092----999999999998288981663117989888999999999981
Q gi|254780217|r 10 YNQRLFGH----EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 10 ~~~~i~G~----~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
+.++++.. +...+.|..+...++ .+++.|+.|.||+|+..++...+.
T Consensus 124 tL~dlv~~G~~~~~~a~~L~~~V~~r~---nilI~G~TgsGKTTll~all~~i~ 174 (320)
T PRK13894 124 TLDQYVERGIMTAEQREAIIAAVRAHR---NILVIGGTGSGKTTLVNAIINEMV 174 (320)
T ss_pred CHHHHHHCCCCCHHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999998769999999999999997287---589985888656899999986320
No 494
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=90.47 E-value=0.47 Score=28.17 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=27.7
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 82889816631179898889999999999817
Q gi|254780217|r 29 CSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 29 ~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
...+.+++++++|..|.|||..+..+.++|..
T Consensus 86 ~~~~~~QsIiiSGESGAGKTestK~il~yL~~ 117 (717)
T cd01382 86 KVLKMSQSIIVSGESGAGKTENTKFVLRYLTE 117 (717)
T ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97199947999668999978999999999863
No 495
>PRK04296 thymidine kinase; Provisional
Probab=90.42 E-value=0.52 Score=27.78 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=53.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHH---------CCCCC
Q ss_conf 631179898889999999999817799886431210126788679999678987545300100010---------13421
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK---------TGKWR 107 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k---------~~~~~ 107 (347)
.+++||=..||++--.+.+...--. | -.++.+.+..|.. .+...
T Consensus 5 ~~i~GpMfSGKTteLi~~~~~~~~~-------------------------g--kkvl~~kp~~D~Ry~~~~I~Sh~g~~~ 57 (197)
T PRK04296 5 YFIYGAMNSGKSTELLQRAYNYEER-------------------------G--MKVLVFTPAIDDRYGEGKVVSRIGLSR 57 (197)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHC-------------------------C--CEEEEEEECCCCCCCCCCEECCCCCEE
T ss_conf 9999342788899999999999987-------------------------9--959999853446577785786789834
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 23237887554431022211112103532205542400014567776630343
Q gi|254780217|r 108 TVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 108 ~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
..|.+....++...+........+.|+.||||.-++....-.+.+.+++-...
T Consensus 58 ~~~~v~~~~~i~~~~~~~~~~~~~dvI~IDEaQFf~~~~i~~~~~~~~~~~~~ 110 (197)
T PRK04296 58 EAILISSDTDIFELIEEEHEGGKIDCVLIDEAQFLDKEQVVQLAEVVDDLGIP 110 (197)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCCCEEEECCHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 68994878999999987630478568997202127989999999999831858
No 496
>pfam05272 VirE Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins.
Probab=90.41 E-value=1.6 Score=23.93 Aligned_cols=40 Identities=28% Similarity=0.538 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999999828-8981663117989888999999999981
Q gi|254780217|r 20 IEKFLSQYYCSG-RMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 20 ~~~~L~~~~~~~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
.+....+++..| +..+..+|.|+.|+||+++.+.++..-+
T Consensus 37 ligaVaR~~~pG~k~d~vlvL~G~QG~gKStf~~~L~~~~~ 77 (198)
T pfam05272 37 LIGAVARVYEPGCKFDHVLILQGAQGSGKSTFLKKLGGEWF 77 (198)
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99999999778976776789988986789999999737751
No 497
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.28 E-value=0.42 Score=28.55 Aligned_cols=133 Identities=19% Similarity=0.123 Sum_probs=0.0
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHH
Q ss_conf 11798988899999999998177998864312101267886799996789875453001000101342123237887554
Q gi|254780217|r 39 FEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 (347)
Q Consensus 39 f~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l 118 (347)
+.||.|.||+|+.+.++. +-.+....-..............+.-..-...+..... ..++.|.-++
T Consensus 31 l~G~NGaGKSTLl~~i~G--l~~p~~G~i~i~g~~~~~~~~~~~~~ig~v~q~~~l~~------------~ltv~e~l~L 96 (173)
T cd03230 31 LLGPNGAGKTTLIKIILG--LLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYE------------NLTVRENLKL 96 (173)
T ss_pred EECCCCCCHHHHHHHHHC--CCCCCCCEEEECCEECCCCHHHHHCCEEEEECCCCCCC------------CCCHHHHHHC
T ss_conf 987899799999999976--85778788999999988684888657899956876671------------2677898633
Q ss_pred HHHCCC-----CCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEE
Q ss_conf 431022-----2111121035322055-424000145677766303434167650443357302520369886
Q gi|254780217|r 119 RYFLSL-----TANTGYWRVIMIDPVD-GMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIK 185 (347)
Q Consensus 119 ~~~~~~-----~~~~~~~Ki~IId~ad-~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~ 185 (347)
..-... .+....-+++++||.- -|...+...+.+.|.+-.+.-.-|+++++.-.-...+-.|+..++
T Consensus 97 SgG~kqrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~i~~l~~~g~tvi~~tH~l~~~~~~~dri~vl~ 169 (173)
T cd03230 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILN 169 (173)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEE
T ss_conf 9899999999999964999999908865799999999999999999689999999283899998699999993
No 498
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=90.28 E-value=0.5 Score=27.96 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 999828898166311798988899999999998
Q gi|254780217|r 26 QYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 26 ~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
+.....+-+++++++|..|.|||..+..+.++|
T Consensus 78 ~~m~~~~~nQsIiisGESGaGKTe~~K~il~yL 110 (674)
T cd01378 78 RSMKSENENQCVIISGESGAGKTEAAKKIMQYI 110 (674)
T ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999971999379996788788889999999999
No 499
>PRK09354 recA recombinase A; Provisional
Probab=90.27 E-value=0.33 Score=29.33 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=0.0
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHH
Q ss_conf 11798988899999999998177998864312101267886799996789875453001000101342123237887554
Q gi|254780217|r 39 FEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRI 118 (347)
Q Consensus 39 f~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l 118 (347)
++||+++||+|+|++++.. ++........-...+.....-...+ |...|=+++..+-. .||.-++
T Consensus 65 i~G~esSGKTtlal~~iae--aQk~Gg~~a~iDaE~ald~~~a~~l--GVd~d~llv~qpd~-----------~Eqal~i 129 (350)
T PRK09354 65 IYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPVYAKKL--GVDIDNLLVSQPDT-----------GEQALEI 129 (350)
T ss_pred EECCCCCCHHHHHHHHHHH--HHHCCCCEEEEEECCCCCHHHHHHC--CCCHHHEEEECCCH-----------HHHHHHH
T ss_conf 9889877799999999999--9975994799960002798899984--97715717856867-----------9999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHCCHHH
Q ss_conf 4310222111121035322055424000
Q gi|254780217|r 119 RYFLSLTANTGYWRVIMIDPVDGMNRNA 146 (347)
Q Consensus 119 ~~~~~~~~~~~~~Ki~IId~ad~ln~~A 146 (347)
...+-.+.... ++|||++-.|...+
T Consensus 130 ~e~Lvrsg~vd---~IVvDSVaAL~pk~ 154 (350)
T PRK09354 130 ADALVRSGAVD---LIVVDSVAALVPKA 154 (350)
T ss_pred HHHHHHCCCCC---EEEEECCCCCCCHH
T ss_conf 99998548841---89982533457688
No 500
>PRK06749 replicative DNA helicase; Provisional
Probab=90.25 E-value=0.33 Score=29.39 Aligned_cols=133 Identities=11% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCE
Q ss_conf 61092999999999998288981663117989888999999999981779988643121012678867999967898754
Q gi|254780217|r 13 RLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDF 92 (347)
Q Consensus 13 ~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~ 92 (347)
++.|=..-+..|.+....=+-..-+++-|.||.||+++|+.+|.... ........-.+.-....-..|.+...+.-+.
T Consensus 165 ~~~Gi~TGf~~LD~lt~Gl~~g~LiviaaRPsmGKTa~alnia~~~a--~~g~~v~~fSlEMs~~~l~~R~ls~~s~v~~ 242 (428)
T PRK06749 165 EITGIETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAA--KSGAAVGLFSLEMSSKQLLKRMASCVGEVSG 242 (428)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCHHHHHHHHHHHHCCCCH
T ss_conf 98768778388987524999886899962798976899999999999--6499279983789999999999997549988
Q ss_pred EEECCCCHHHCCCC--------------------CCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 53001000101342--------------------123237887554431022211112103532205542400014
Q gi|254780217|r 93 LYLSYSLNPKTGKW--------------------RTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 (347)
Q Consensus 93 ~~i~~~~~~k~~~~--------------------~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaN 148 (347)
..+..+...-+... ...+++++||.-.+.+...-..... ++|||....|.....+
T Consensus 243 ~~i~~~~~~~~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~g~~~~-livIDYlqLi~~~~~~ 317 (428)
T PRK06749 243 GRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKV-LIIVDYLQLITGDPKH 317 (428)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCE-EEEEEHHHHCCCCCCC
T ss_conf 88627767799999999999999985596599758997679999999999997499876-9997677650578777
Done!