HHsearch alignment for GI: 254780217 and conserved domain: pfam00004
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=98.88 E-value=4.3e-09 Score=92.84 Aligned_cols=115 Identities=23% Similarity=0.200 Sum_probs=72.3
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHH
Q ss_conf 63117989888999999999981779988643121012678867999967898754530010001013421232378875
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR 116 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR 116 (347)
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~-------~~~v---------------~~~~~~--~~-~~---g-----~~~~~i~ 47 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAP-------FIEI---------------SGSELV--SK-YV---G-----ESEKRLR 47 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCC-------CEEC---------------CCCCCC--CC-CC---C-----HHHHHHH
T ss_conf 9878999999999999999997898-------5332---------------420122--23-34---5-----0688899
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHCCHH-----------HHHHHHHHHHH---CCCCCCEEEEECCCCCCCHHHH-CEE
Q ss_conf 54431022211112103532205542400-----------01456777663---0343416765044335730252-036
Q gi|254780217|r 117 RIRYFLSLTANTGYWRVIMIDPVDGMNRN-----------AANALLKSLEE---PPQKVLFILISHASPTILSTIR-SRC 181 (347)
Q Consensus 117 ~l~~~~~~~~~~~~~Ki~IId~ad~ln~~-----------AaNALLK~LEE---Pp~~t~fiLit~~~~~il~TI~-SRc 181 (347)
T Consensus 48 ~~f~~a~~----~~p~Il~iDe~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~~ld~al~r~Rf 123 (131)
T pfam00004 48 ELFEAAKK----LAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLRGRF 123 (131)
T ss_pred HHHHHHHH----CCCCEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHCCCC
T ss_conf 99999997----49918983116777516788888751326878999985022468876999975990449977962833
Q ss_pred EEEECCC
Q ss_conf 9886479
Q gi|254780217|r 182 LSIKFNS 188 (347)
Q Consensus 182 ~~i~f~~ 188 (347)
T Consensus 124 d~~i~~p 130 (131)
T pfam00004 124 DRIIEFP 130 (131)
T ss_pred EEEEEEC
T ss_conf 2899806