HHsearch alignment for GI: 254780217 and conserved domain: pfam00154

>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=91.18  E-value=0.39  Score=28.80  Aligned_cols=131  Identities=19%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             HHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC-CCCHHHHHHHCCCCCCEEEECCCCH
Q ss_conf             99999828898--16631179898889999999999817799886431210126-7886799996789875453001000
Q gi|254780217|r   24 LSQYYCSGRMH--HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD-PCSPFVKQMASHALHDFLYLSYSLN  100 (347)
Q Consensus        24 L~~~~~~~~l~--ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~-~~~~~~~~i~~~~hpd~~~i~~~~~  100 (347)
T Consensus        40 lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQ-k~---gg~~~~iD~E~a~d~~~-a~~lGVD~~~l~~~qp--  112 (322)
T pfam00154        40 LDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQ-KA---GGTAAFIDAEHALDPVY-AKKLGVDIDNLLVSQP--  112 (322)
T ss_pred             HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HC---CCEEEEEEHHHHCCHHH-HHHCCCCHHHEEEECC--
T ss_conf             99987589977870899988987778999999999997-34---99389985366059889-9980988025389778--


Q ss_pred             HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH------------------HHHHHHHHH-HCCCCC
Q ss_conf             1013421232378875544310222111121035322055424000------------------145677766-303434
Q gi|254780217|r  101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA------------------ANALLKSLE-EPPQKV  161 (347)
Q Consensus       101 ~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A------------------aNALLK~LE-EPp~~t  161 (347)
T Consensus       113 ---------d~~Eqal~i~~~li~~---~~~~liViDSvaal~p~~E~e~~~~d~~~g~~Ar~ms~alRklt~~l~k~~~  180 (322)
T pfam00154       113 ---------DTGEQALEIADMLVRS---GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNT  180 (322)
T ss_pred             ---------CHHHHHHHHHHHHHCC---CCCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             ---------8399999999998537---9976599825345676888752432232135799999999999999730585


Q ss_pred             CEEEEECCCCCC
Q ss_conf             167650443357
Q gi|254780217|r  162 LFILISHASPTI  173 (347)
Q Consensus       162 ~fiLit~~~~~i  173 (347)
T Consensus       181 ~~IfiNQ~R~ki  192 (322)
T pfam00154       181 TVIFINQIRMKI  192 (322)
T ss_pred             EEEEEEEEHHHC
T ss_conf             499976551114