HHsearch alignment for GI: 254780217 and conserved domain: pfam00154
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=91.18 E-value=0.39 Score=28.80 Aligned_cols=131 Identities=19% Similarity=0.188 Sum_probs=62.1
Q ss_pred HHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC-CCCHHHHHHHCCCCCCEEEECCCCH
Q ss_conf 99999828898--16631179898889999999999817799886431210126-7886799996789875453001000
Q gi|254780217|r 24 LSQYYCSGRMH--HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD-PCSPFVKQMASHALHDFLYLSYSLN 100 (347)
Q Consensus 24 L~~~~~~~~l~--ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~-~~~~~~~~i~~~~hpd~~~i~~~~~ 100 (347)
T Consensus 40 lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQ-k~---gg~~~~iD~E~a~d~~~-a~~lGVD~~~l~~~qp-- 112 (322)
T pfam00154 40 LDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQ-KA---GGTAAFIDAEHALDPVY-AKKLGVDIDNLLVSQP-- 112 (322)
T ss_pred HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HC---CCEEEEEEHHHHCCHHH-HHHCCCCHHHEEEECC--
T ss_conf 99987589977870899988987778999999999997-34---99389985366059889-9980988025389778--
Q ss_pred HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH------------------HHHHHHHHH-HCCCCC
Q ss_conf 1013421232378875544310222111121035322055424000------------------145677766-303434
Q gi|254780217|r 101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA------------------ANALLKSLE-EPPQKV 161 (347)
Q Consensus 101 ~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A------------------aNALLK~LE-EPp~~t 161 (347)
T Consensus 113 ---------d~~Eqal~i~~~li~~---~~~~liViDSvaal~p~~E~e~~~~d~~~g~~Ar~ms~alRklt~~l~k~~~ 180 (322)
T pfam00154 113 ---------DTGEQALEIADMLVRS---GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNT 180 (322)
T ss_pred ---------CHHHHHHHHHHHHHCC---CCCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf ---------8399999999998537---9976599825345676888752432232135799999999999999730585
Q ss_pred CEEEEECCCCCC
Q ss_conf 167650443357
Q gi|254780217|r 162 LFILISHASPTI 173 (347)
Q Consensus 162 ~fiLit~~~~~i 173 (347)
T Consensus 181 ~~IfiNQ~R~ki 192 (322)
T pfam00154 181 TVIFINQIRMKI 192 (322)
T ss_pred EEEEEEEEHHHC
T ss_conf 499976551114