HHsearch alignment for GI: 254780217 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=95.24 E-value=0.29 Score=29.81 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 92999999999998288981663117989888999999999981
Q gi|254780217|r 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVL 59 (347)
Q Consensus 16 G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~ll 59 (347)
T Consensus 3 ~Q~~~i~~~~~----g---~~~iv~~pTGsGKT~~~~~~~l~~~ 39 (167)
T pfam00270 3 IQAEAIPAILE----G---KDVLVQAPTGSGKTLAFLLPALQAL 39 (167)
T ss_pred HHHHHHHHHHC----C---CCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 59999999976----9---9789988999758999999999998