HHsearch alignment for GI: 254780217 and conserved domain: pfam00308
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.32 E-value=4e-05 Score=60.91 Aligned_cols=185 Identities=17% Similarity=0.178 Sum_probs=106.4
Q ss_pred CHHHH-CCHHHHHH-HHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 56561-09299999-99999982--8898166311798988899999999998177998864312101267886799996
Q gi|254780217|r 10 YNQRL-FGHEDIEK-FLSQYYCS--GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA 85 (347)
Q Consensus 10 ~~~~i-~G~~~~~~-~L~~~~~~--~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (347)
T Consensus 6 TFdnF~vg~~N~~a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~-------------------- 65 (219)
T pfam00308 6 TFENFVIGSSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNL-------------------- 65 (219)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC--------------------
T ss_conf 710202368389999999999967587678269988999988899999999999849998--------------------
Q ss_pred CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHH--HHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHCCC-C
Q ss_conf 78987545300100010134212323788755--443102221111210353220554240--001456777663034-3
Q gi|254780217|r 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRR--IRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEPPQ-K 160 (347)
Q Consensus 86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~--l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEPp~-~ 160 (347)
T Consensus 66 -----~v~yl~~~--~~~~-----~~~~~l~~~~~~~f---~~~l~~~d~l~iDDi~~l~~~~~~ee~lf~l~N~~~~~~ 130 (219)
T pfam00308 66 -----RVVYLTSE--EFLN-----DFVDALRDNKIEAF---KKSYRNVDLLLIDDIQFLAGKEKTQEEFFHTFNALHENN 130 (219)
T ss_pred -----EEEEEEHH--HHHH-----HHHHHHHCCCHHHH---HHHHHHCCHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf -----28884399--9999-----88999981888899---999763233652236765686478999999999999729
Q ss_pred CCEEEEECCC-C---CCCHHHHCEE---EEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 4167650443-3---5730252036---9886479998999999997----27888967899999975989789998814
Q gi|254780217|r 161 VLFILISHAS-P---TILSTIRSRC---LSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKILH 229 (347)
Q Consensus 161 t~fiLit~~~-~---~il~TI~SRc---~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~ 229 (347)
T Consensus 131 ~~lllts~~~p~~l~~~~~dL~SRL~~g~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v~~yl~~r~~R~~r~L~~~L~ 210 (219)
T pfam00308 131 KQIVLTSDRPPKELEGFEDRLRSRFEWGLIIAIEPPDLETRLAILRKKAEEENINIPNEVLNFIAQRITDNVRELEGALN 210 (219)
T ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 86999779981002453277999986875661169999999999999999849999999999999842798999999999